Protein Structure Prediction Center
CASP13 Meeting - join us at Riviera Maya this December
Success Stories From Recent CASPs
 
template-based
modeling
ab initio
modeling
contact
prediction
help structural
biologists
refinement data-assisted
modeling
||
template-based modeling
Models based on templates identified by sequence similarity remain the most accurate. Over the course of the CASP experiments there have been enormous improvements in this area. However, the overall accuracy improvements that we have seen in the first 10 years of CASP remained unmatched until CASP12, when a new burst of progress happened (see the plot). In two years from CASP11 to CASP12 the backbone accuracy of the submitted models improved more than in the preceeding 10 years. Several factors contributed to this, including more accurate alignment of the target sequence to that of available templates, combining multiple templates, improved accuracy of regions not covered by templates, successful refinement of models, and better selection of models from decoy sets due to improved methods for estimation of model accuracy. [Kryshtafovych et al, 2018]
   

     target T0868-D1 (orange)
model 330_2 (blue): GDT_TS=87 best template: 2cw6 (seq.id= 4.2%)

Welcome to the Protein Structure Prediction Center!

Our goal is to help advance the methods of identifying protein structure from sequence. The Center has been organized to provide the means of objective testing of these methods via the process of blind prediction. The Critical Assessment of protein Structure Prediction (CASP) experiments aim at establishing the current state of the art in protein structure prediction, identifying what progress has been made, and highlighting where future effort may be most productively focused.

There have been twelve previous CASP experiments. The thirteenth experiment is planned to start in May 2018. Description of these experiments and the full data (targets, predictions, interactive tables with numerical evaluation results, dynamic graphs and prediction visualization tools) can be accessed following the links:

CASP1 (1994) | CASP2 (1996) | CASP3 (1998) | CASP4 (2000) | CASP5 (2002) | CASP6 (2004) | CASP7 (2006) | CASP8 (2008) | CASP9 (2010) | CASP10 (2012) | CASP11 (2014) | CASP12 (2016) | CASP13 (2018)

Raw data for the experiments held so far are archived and stored in our data archive.


Details of the experiments have been published in a scientific journal Proteins: Structure, Function and Bioinformatics. CASP proceedings include papers describing the structure and conduct of the experiments, the numerical evaluation measures, reports from the assessment teams highlighting state of the art in different prediction categories, methods from some of the most successful prediction teams, and progress in various aspects of the modeling.
Prediction methods are assessed on the basis of the analysis of a large number of blind predictions of protein structure. Summary of numerical evaluation of the tertiary structure prediction methods tested in the latest CASP experiment can be found on this web page. The main numerical measures used in evaluations are described in the papers [1] , [2] . The latter paper also contains explanations of data handling procedures and guidelines for navigating the data presented on this website.

Some of the best performing methods are implemented as fully automated servers and therefore can be used by public for protein structure modeling.


To proceed to the pages related to the latest CASP experiments click on the logo below:

CASP13 Home   FORCASP Forum

Discussion Forum



Prediction
of docking interactions
Continuous Automated Model EvaluatiOn
CASP13 presentations
Dear CASP participants and observers, Hope you are safely back home after a very productive and exciting meeting in Mexico. Informing you that we have posted at our website all the CASP13 presenta ...
CASP13 ranking tables released
In accordance with the decision of CASP12 predictors' meeting, we are releasing rankings of CASP13 participants according to the formulae used by the assessors in the previous round of CASP. Ranking t ...
CASP13 program and results are available online
Dear CASPers, We are sure all of you are very eager to learn your results in CASP13. The evaluation results and the program of the CASP13 conference are now available online from the http://predic ...
Protein Structure Prediction Center
Sponsored by the US National Institute of General Medical Sciences (NIH/NIGMS)
Please address any questions or queries to:
© 2007-2018, University of California, Davis