Target List csv |
Targets expire on the specified date at noon (12:00) local time in California (GMT - 7 hours).
Green color - active target;
Yellow color - target expires within 48 hours;
Orange color - target expires within 24 hours;
Red color - target has expired for server TS/RR predictions, but is still open for QA predictions.
Refinement and data-assisted targets are highlighted with the light grey background.
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* targets selected for CAPRI experiment |
|
1. |
X0953 |
Assisted
|
-
|
A3B1
|
2018-06-12 |
2018-06-15 |
- |
2018-07-01 |
This is a cross-linking assisted modeling target. The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010094 and use the following credentials to login: Username: reviewer70721@ebi.ac.uk Password: M9rdkSXT Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf.
|
2. |
X0953s1 |
Assisted
|
-
|
A1
|
2018-06-12 |
2018-06-15 |
- |
2018-07-01 |
This is a cross-linking assisted modeling target (subunit 1 of the heterocomplex). The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010094 and use the following credentials to login: Username: reviewer70721@ebi.ac.uk Password: M9rdkSXT Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf.
|
3. |
X0953s2 |
Assisted
|
-
|
A1
|
2018-06-12 |
2018-06-15 |
- |
2018-07-01 |
This is a cross-linking assisted modeling target (subunit 2 of the heterocomplex). The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010094 and use the following credentials to login: Username: reviewer70721@ebi.ac.uk Password: M9rdkSXT Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf.
|
4. |
X0957 |
Assisted
|
-
|
A1B1
|
2018-06-14 |
2018-06-17 |
- |
2018-07-02 |
This is a cross-linking assisted modeling target. The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010003 and use the following credentials to login: Username: reviewer44414@ebi.ac.uk Password: wbhw7G4Q Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
5. |
X0957s1 |
Assisted
|
-
|
A1
|
2018-06-14 |
2018-06-17 |
- |
2018-07-02 |
This is a cross-linking assisted modeling target (subunit 1 of the heterocomplex). The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010003 and use the following credentials to login: Username: reviewer44414@ebi.ac.uk Password: wbhw7G4Q Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
6. |
X0957s2 |
Assisted
|
-
|
A1
|
2018-06-14 |
2018-06-17 |
- |
2018-07-02 |
This is a cross-linking assisted modeling target (subunit 2 of the heterocomplex). The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/ To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010003 and use the following credentials to login: Username: reviewer44414@ebi.ac.uk Password: wbhw7G4Q Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
7. |
X0968 |
Assisted
|
-
|
A2B2
|
2018-06-26 |
2018-06-29 |
- |
2018-07-15 |
This is a cross-linking assisted modeling target. The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010003 and use the following credentials to login: Username: reviewer91348@ebi.ac.uk Password: q9fEUNmI Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
8. |
X0968s1 |
Assisted
|
-
|
A1
|
2018-06-26 |
2018-06-29 |
- |
2018-07-15 |
This is a cross-linking assisted modeling target (subunit 1 of the heterocomplex). The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010003 and use the following credentials to login: Username: reviewer91348@ebi.ac.uk Password: q9fEUNmI Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
9. |
X0968s2 |
Assisted
|
-
|
A1
|
2018-06-26 |
2018-06-29 |
- |
2018-07-15 |
This is a cross-linking assisted modeling target (subunit 2 of the heterocomplex). The data were collected on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010003 and use the following credentials to login: Username: reviewer91348@ebi.ac.uk Password: q9fEUNmI Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
10. |
x0957 |
Assisted
|
-
|
A1B1
|
2018-07-05 |
2018-07-08 |
- |
2018-07-25 |
This is a cross-linking assisted modeling target. The data were acquired by J.Rappsilber's group on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0957_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
|
11. |
x0957s1 |
Assisted
|
-
|
A1
|
2018-07-05 |
2018-07-08 |
- |
2018-07-25 |
This is a cross-linking assisted modeling target (subunit 1 of the heterocomplex). The data were acquired by J.Rappsilber's group on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0957_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
|
12. |
x0957s2 |
Assisted
|
-
|
A1
|
2018-07-05 |
2018-07-08 |
- |
2018-07-25 |
This is a cross-linking assisted modeling target (subunit 2 of the heterocomplex). The data were acquired by J.Rappsilber's group on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0957_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
|
13. |
x0968 |
Assisted
|
-
|
A2B2
|
2018-07-16 |
2018-07-19 |
- |
2018-08-02 |
This is a cross-linking assisted modeling target. The data were acquired by J.Rappsilber's group on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0968_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
|
14. |
x0968s1 |
Assisted
|
-
|
A1
|
2018-07-16 |
2018-07-19 |
- |
2018-08-02 |
This is a cross-linking assisted modeling target (subunit 1 of the heterocomplex). The data were acquired by J.Rappsilber's group on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0968_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
|
15. |
x0968s2 |
Assisted
|
-
|
A1
|
2018-07-16 |
2018-07-19 |
- |
2018-08-02 |
This is a cross-linking assisted modeling target (subunit 2 of the heterocomplex). The data were acquired by J.Rappsilber's group on the whole heteromeric complex. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0968_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
|
16. |
X0975 |
Assisted
|
-
|
A1
|
2018-07-16 |
2018-07-19 |
- |
2018-08-06 |
This is a cross-linking assisted modeling target. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010385 and use the following credentials to login: Username: reviewer81343@ebi.ac.uk Password: zK0BY71P Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
17. |
X0981 |
Assisted
|
-
|
A3
|
2018-07-17 |
2018-07-20 |
- |
2018-08-07 |
This is a cross-linking assisted modeling target. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010384 and use the following credentials to login: Username: reviewer66164@ebi.ac.uk Password: S5U0kqOw Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
18. |
X0985 |
Assisted
|
-
|
A1
|
2018-07-19 |
2018-07-22 |
- |
2018-08-08 |
This is a cross-linking assisted modeling target. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010483 and use the following credentials to login: Username: reviewer80816@ebi.ac.uk Password: 4Z1QRYaH Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
19. |
X0987 |
Assisted
|
-
|
A1
|
2018-07-23 |
2018-07-26 |
- |
2018-08-07 |
This is a cross-linking assisted modeling target. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. To access raw XL-MS data for this target (whole complex), please go to https://www.ebi.ac.uk/pride/archive/projects/PXD010410 and use the following credentials to login: Username: reviewer33138@ebi.ac.uk Password: 0bvme2ld Additional description of the method can be found at http://predictioncenter.org/casp13/doc/CASP_Webinar_XLMS.pdf
|
20. |
X0999 * |
Assisted
|
-
|
A2
|
2018-08-01 |
2018-08-04 |
- |
2018-08-20 |
This is a cross-linking assisted modeling target. The experimental data are posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/. Raw XL-MS data for this target are currently unavailable.
|
21. |
x0975 |
Assisted
|
-
|
A1
|
2018-08-06 |
2018-08-09 |
- |
2018-08-20 |
This is a cross-linking assisted modeling target. The experimental data were acquired by J.Rappsilber's group and posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0975_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target, please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
|
22. |
x0987 |
Assisted
|
-
|
A1
|
2018-08-07 |
2018-08-10 |
- |
2018-08-22 |
This is a cross-linking assisted modeling target. The experimental data were acquired by J.Rappsilber's group and posted at http://predictioncenter.org/download_area/CASP13/extra_experiments/x0987_Berlin.csv. Note that this target name starts from the lowercase 'x', while cross-linking targets from A. Leitner's group start from the capital 'X'. The cross-linker is heterobifunctional and reacts on one side with the side chains of K, S, T, Y via the amide and hydroxyl group, respectively. On the other side the cross-linker reacts indiscriminately with any C-H and N-H bond, be it in the side chain or backbone of any amino acid. The reported distance limit (25 Angstroms) is the estimated upper limit between the CAs of corresponding residues. The last column provides an estimated confidence level for the contact to be correct. The confidence score is derived from a false discovery rate (FDR) estimation. For example at 0.95, we estimate that the likely incidence of mismatch is at 5%. To access raw XL-MS data for this target, please go to https://www.ebi.ac.uk/pride/archive/projects/ and use the following credentials to login: Project accession: PXD010884 Username: reviewer91980@ebi.ac.uk Password: Ow22Vk9d
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