CASP2 meeting program

Thursday December 12

 3:00 - 6:00	Registration

 6:00		Dinner

 7:30		Introduction					John Moult

 8:30 		Mixer						Firelight Forum


Friday December 13th - Comparative Modeling day		Chapel

 8:30		Introduction to numerical evaluation		Chapel
		of Comparative Models.			       	Krzysztof Fidelis

 8:45		Analysis of Comparative Modeling Predictions	Janet Thornton


Presentations by Comparative Modeling groups:

 9:30		R. Abagyan (S), S. Batalov, Y. Zhou, T. Cardozo, and M. Totrov.

 9:50		A. Aszodi (S) and W. Taylor.

10:10		R. Samudrala (S) and J. Moult.

!0:30		Break

11:00		R. Sanchez (S), A. Sali, and M. Forster.

11:20		P. Bates (S), R.M. Jackson and M.J.E. Sternberg.

11:40		R. Harrison (S) and I. Weber.

12:00 		Lunch

 1:00		Discussion: Extensions of CASP.			Evergreen
								John Moult (chair)
		Including:
		ProStar : A Framework for testing potentials, M. Braxenthaler
		The UCLA-DOE Benchmarks for testing threading potentials, D. Fischer
	
 4:00		The Livermore Prediction Center: User		Evergreen
 		meeting and planning session.			Krzysztof Fidelis(chair)

 3:00 - 6:00 	Posters and computer demonstrations I		Firelight Forum

 3.00 - 4.30 	MODELLER, A. Sali
		Molecular mechanics program AMMP, I. Weber and R. Harrison
		Fold Recognition using ProFIT, F. Domingues, M. Jaritz, H. Floeckner and M. Sippl

 4.30 - 6.00 	3D-Profile-Maker, F. Melo, C. Riqueleme, E. Feytmans
		Threader : MAO, M. Ota, and K. Nishikawa
		Pcan : Sequence profile scanner: A. Elofsson
	
 6:00 		Dinner

 7:15		Discussion of comparative modeling results
		and the evolution of numerical criteria 	Chapel
		for model evaluation				Janet Thornton (chair)

 9:30		Bar						Firelight Forum


Saturday December 14th - Threading day			Chapel

 8:30		Introduction to numerical evaluation 
		of threading and Description of Targets		Steve Bryant

 9:00		Criteria for assessment of Threading
		Predictions					Michael Levitt

 9:15		Discussion 

Presentations by Threading Groups:

 9:30		I. Dubchak (S), I. Muchnik, S.R.Holbrook, and S.-H. Kim

 9:50		A. Bateman and A.G. Murzin (S)

10:10		D. Eisenberg, D. Fischer, D. Rice (S), and R. Weiss

10:30		Break

11:00		B. Rost (S)

11:20		F. Domingues, M. Jaritz, H. Floeckner, and M. Sippl (S)

11:40		S.H. Bryant (S), C.W.V. Hogue, T.Madej, A. Marchler-Bauer, and
		H. Ohkawa

12:00		Lunch

 1:00		Workshop on Numerical criteria, methods, and	Evergreen
		Structure comparisons				Steve Bryant (chair)

 4:00 		Discussion on the proposed general		Evergreen
		model database					John Moult (chair)

 3:00 - 6:00 	Posters and computer demonstrations II		Firelight Forum

 3:00 - 4.30	Threader : FOLDFIT, M.A.S. Saqi, R.A. Sayle, R. Russel, P.A. Bates, 
                           and M.J.E Sternberg
		Threader and genome analysis program FRAGAS, D. Fischer and D. Eisenberg
		DSC secondary structure predictor, R.D. King, M.A.S. Saqi, and M.J.E Sternberg

 4:30 - 6.00 	Neural net secondary structure predictor, J.A. Flohil, T-d, Hoop, and E.E. Frietman
		sss_align, S.S. Sturrock and A.F.W. Coulson

 6:00		Dinner

 7:15		Analysis of the Threading Predictions		Chapel
								Michael Levitt

 8:15		Short presentations by additional threading groups:

		P. Thomas (S) and S. Dixon.
		D. Haussler, K. Karplus, R. Hughey, C. Barrett, M. Cline, M. Hansen 
                  K. Sjolander (S), R. Karchin, R. Rivera and C. Tarnas.
		V. Di Francesco (S) and P. Munson.
		N. Alexandrov (S), M. Bass, V. Solovyev, and R.Luethy
		R. Zimmer (S), T. Lengauer, H. Mevissen and R. Thiele
		J. Park, T.J.P. Hubbard (S) and A. Reinhardt
		W. Taylor (S) and R. Munro
		M. Braxenthaler (S), B. Milash,  J. Moult, R. Samudrala and
		  J.T. Pedersen

 9:45		Bar 						Firelight Forum

Sunday, December 15th - Ab initio day		Chapel

 8.30		Introduction to numerical evaluation 
		of Ab Initio Predictions			Tim Hubbard

 8:40 		Analysis of the Ab initio Predictions		Arthur Lesk

Presentations by Ab initio groups:

 9:30		J.T. Pedersen (S) and J. Moult

 9:50		D.J. Osguthorpe (S) 

10:10		R. Munro (S) & W.R. Taylor

10:30		Break

11:00 		S. Benner, F. Cohen, D. Gerloff (S), M Joachimiak and M. Turcotte.

11:20		R. Srinivasan & G.D. Rose (S)

11:30		F. Avbelj (S)

11:40		R. Abagyan (S), M. Totrov, S. Batalov, Y. Zhou, and T. Cardozo

11:50		D. Jones (S)

12:00 		Lunch

 1:00		Discussion of Plans for a CASP3			Evergreen

 3:00 - 6:00	Posters and computer Demonstrations III		Firelight Forum

 3:00 - 4:30	Contact matrix predictor, S. Galaktionov and G. Marshall
		OSIRIS - ab-initio folding algorithm, A.T-Soumarmon, N. Benhabiles, and R. Brasseur
		LINUS - ab-initio folding algorithm, R. Srinivasan and G.D. Rose

 4.30 - 6.00 	Docking with RESEARCH and GAMMA, S. Ness, T. Hart and R. Read
		Docking with FleX B. Kramer, M. Rarey, and T. Lengauer
		ProStar - A potential test site, M. Braxenthaler

 6:00		Dinner

 7:15 		Round table on Ab initio Methods and methods for evaluating predictions.
								Chapel
								Arthur Lesk & 
								Tim Hubbard

 9:30		Bar						Firelight Forum

Monday, December 17th - Docking Day				Chapel

 8:30		Analysis of Docking Predictions			Scott Dixon

Presentations by Docking groups:

 9:30		S. Ness (S), T. Hart  & R. Read

 9:50		V. Sobolev (S), R. Wade, G. Vriend, T. Moallem and M. Edelman

10:10		R. Abagyan (S) and M. Totrov

10:30		Break

11:00		B. Kramer, T. Lengauer and M. Rarey

11:20		I. Vakser (S) 

11:40		H.A Gabb, R.M Jackson and M.J.E. Sternberg (S)

12:00 		Lunch

 1:00		Discussion of Docking Predictions		Scott Dixon (chair)

 3:30		Wrap-up						Steve Bryant &
								Tim Hubbard