Sequence Independent Analysis
LGA results for Target: T0086

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0086 : 71

Models ordered by number of AL4+ aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1a1d.-.-) to the target T0086


Submitted models


Details about the closest PDB structure to the target T0086
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1a1d.-.-
146
79
2.57
7.59
2.955
T I


Models ordered by number of AL4+ aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
Shortle T0086TS001_1
164
164
57
46
3
2.68
2.050
T I D
Murzin T0086TS384_1
164
164
55
35
4
2.87
1.852
T I D
ORNL-PROSPECT T0086TS088_1
164
164
53
8
2
3.27
1.573
T I D
BioInfo.PL T0086TS031_1
164
164
52
7
0
3.25
1.552
T I D
Ho-Kai-Ming T0086AL375_1
164
164
52
1
0
3.27
1.543
T I D
Valencia-CNB T0086AL162_1
164
145
51
21
5
3.32
1.491
T I D
bioinbgu-gonpm T0086AL105_1
164
125
50
13
2
2.95
1.639
T I D
baker T0086TS354_1
164
164
50
6
1
2.97
1.629
T I D
Skolnick-Kolinski-THD T0086TS393_1
164
164
49
7
0
3.39
1.404
T I D
Ram-Samudrala T0086TS028_1
164
164
48
5
2
3.10
1.500
T I D
Skolnick-Kolinski T0086TS080_1
164
164
48
13
1
3.20
1.455
T I D
Taylor T0086TS390_1
164
133
48
4
0
3.19
1.459
T I D
roland-luethy T0086TS309_1
164
164
47
2
1
3.43
1.331
T I D
Friesner T0086TS414_1
164
164
46
13
3
3.28
1.361
T I D
Holm T0086AL073_1
164
164
46
6
0
2.70
1.643
T I D
Yoon T0086TS152_1
164
164
46
7
0
3.33
1.341
T I D
Lee-Jung T0086TS191_1
164
126
45
12
8
2.84
1.531
T I D
zhu T0086TS352_1
164
164
44
10
3
2.88
1.477
T I D
MRIT-Onizuka T0086AL052_1
164
162
44
3
2
3.38
1.264
T I D
GNM-FR T0086TS161_1
164
164
44
1
0
2.83
1.502
T I D
SAM-T2K T0086AL094_1
164
107
43
9
4
2.81
1.478
T I D
Akiyama T0086TS252_1
164
164
43
14
2
3.30
1.265
T I D
BMERC T0086AL248_1
164
106
43
4
1
2.90
1.433
T I D
FFAS T0086AL395_1
164
127
43
3
0
3.01
1.383
T I D
FFAS T0086XA395_1.late
164
127
43
3
0
3.01
1.383
T I D
UCLA-DOE T0086AL229_1
164
136
43
8
0
3.34
1.250
T I D
TUDELFT T0086TS155_1
164
162
42
14
3
3.25
1.254
T I D
Honig-Barry T0086TS042_1
164
164
42
9
3
3.55
1.151
T I D
Yang-Ansuei T0086TS017_1_2
164
102
42
2
0
2.95
1.377
T I D
Harrison-Weber T0086TS058_1
164
156
42
12
0
3.09
1.317
T I D
Flake&mates T0086TS278_1
164
134
42
0
0
3.24
1.257
T I D
Bass-Michael T0086TS086_1
164
118
42
0
0
3.27
1.246
T I D
Sternberg T0086AL126_1
164
85
41
12
4
3.05
1.302
T I D
Braun-UTMB T0086TS223_1
164
164
41
5
2
2.90
1.367
T I D
Jones-Ab T0086TS281_1
164
164
41
10
1
3.27
1.217
T I D
PDB-Blast T0086AL158_1
164
68
41
0
0
2.69
1.470
T I D
GMD-SCAI T0086AL361_1
164
144
40
1
0
3.25
1.194
T I D
bioinbgu T0086AL093_1
164
77
39
2
0
2.25
1.660
T I D
bioinbgu-prfseq T0086AL108_1
164
77
39
2
0
2.25
1.660
T I D
Tsigelny T0086AL274_1
164
88
39
10
0
2.85
1.322
T I D
Bystroff T0086TS055_1
164
164
39
1
0
2.96
1.275
T I D
Fugue-Cam T0086AL103_1
164
158
39
10
0
3.05
1.238
T I D
bioinbgu-gonp T0086AL104_1
164
138
39
3
0
3.42
1.108
T I D
Sternberg-3DPSSM T0086AL132_1
164
121
39
8
0
3.46
1.096
T I D
Fischer-Daniel T0086AL357_1_2
164
57
38
2
0
3.03
1.214
T I D
BinToHes T0086TS255_1
164
164
38
1
0
3.28
1.124
T I D
Torda-Andrew T0086TS065_1
164
137
37
6
1
2.90
1.233
T I D
PDB-ISL T0086AL344_1
164
164
37
6
0
3.34
1.076
T I D
Raghava-GPS T0086TS018_1u
164
164
37
0
0
3.49
1.031
T I D
bioinbgu-seqpprf T0086AL106_1
164
126
36
9
0
3.03
1.150
T I D
bioinbgu-seqpmprf T0086AL107_1
164
126
36
9
0
3.03
1.150
T I D
Del-Carpio-Yoshimori T0086TS045_1
164
164
35
4
2
3.22
1.054
T I D
Gerloff T0086TS003_1
164
101
35
5
1
3.34
1.017
T I D
josé T0086AL405_1
164
145
34
11
2
3.26
1.012
T I D
Walts-Wondrous-Wizards T0086AL044_1
164
156
34
18
1
2.76
1.189
T I D
GenTHREADER T0086AL259_1
164
75
34
3
1
3.08
1.069
T I D
mGenTHREADER T0086AL260_1
164
75
34
3
1
3.08
1.069
T I D
Tatsuya T0086AL329_1
164
79
34
0
0
3.33
0.991
T I D
Godzik T0086AL197_1_1
164
45
32
0
0
2.49
1.236
T I D
Rose-Group T0086TS035_1_1
164
62
32
0
0
3.08
1.006
T I D
CBC-FOLD T0086AL133_1
164
136
29
5
1
3.23
0.871
T I D
WXW T0086AL273_1_1
164
119
29
0
0
2.95
0.951
T I D
Vajda T0086TS241_1
164
65
29
1
0
3.38
0.833
T I D
Rose-Group T0086TS035_1_2
164
38
28
0
0
2.64
1.022
T I D
DNAmining.com/p-map T0086AL170_1
164
58
27
0
0
2.93
0.891
T I D
Levy T0086AL331_1
164
58
27
1
0
3.33
0.787
T I D
SAM-T99 T0086AL111_1
164
132
24
0
0
3.06
0.759
T I D
Godzik T0086AL197_1_2
164
49
24
1
0
3.09
0.752
T I D
Rose-Group T0086TS035_1_3
164
41
23
0
0
2.99
0.744
T I D
Yang-Ansuei T0086TS017_1_1
164
23
19
12
1
2.61
0.701
T I D
WXW T0086AL273_1_2
164
17
17
8
0
2.75
0.596
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001