Sequence Independent Analysis
LGA results for Target: T0087

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0087 : 74

Models ordered by number of AL4+ aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1qrr.A.-) to the target T0087


Submitted models


Details about the closest PDB structure to the target T0087
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1qrr.A.-
390
123
2.99
8.94
3.978
T I


Models ordered by number of AL4+ aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
BioInfo.PL T0087TS031_1
309
309
108
31
7
2.92
3.576
T I D
SBI-GR T0087TS457_1
309
299
100
24
1
3.18
3.049
T I D
Jones T0087TS023_1
309
226
99
29
6
2.85
3.356
T I D
bioinbgu-gonpm T0087AL105_1
309
297
91
34
13
2.97
2.964
T I D
Cafasp-consensus T0087AL359_1u
309
297
91
34
13
2.97
2.964
T I D
Wolynes T0087TS032_1
309
309
91
22
10
3.18
2.774
T I D
bioinbgu-gonp T0087AL104_1
309
283
90
37
17
3.06
2.848
T I D
GMD-SCAI T0087AL361_1
309
265
90
39
15
2.82
3.082
T I D
BinToHes T0087TS255_1
309
309
89
27
10
2.86
3.007
T I D
Levy T0087AL331_1
309
245
89
19
2
3.13
2.755
T I D
BMERC T0087AL248_1
309
304
88
19
5
2.89
2.943
T I D
baker T0087TS354_1
309
309
87
55
28
2.88
2.919
T I D
Braun-UTMB T0087TS223_1
309
296
87
27
2
3.11
2.710
T I D
Sternberg-3DPSSM T0087AL132_1
309
245
86
39
13
2.69
3.082
T I D
Flake&mates T0087TS278_1
309
253
85
47
17
3.03
2.716
T I D
Torda-Andrew T0087TS065_1
309
255
85
27
7
2.83
2.901
T I D
bioinbgu T0087AL093_1
309
285
84
34
18
2.93
2.772
T I D
bioinbgu-prfseq T0087AL108_1
309
285
84
34
18
2.93
2.772
T I D
Fischer-Daniel T0087AL357_1
309
285
84
34
18
2.93
2.772
T I D
Walts-Wondrous-Wizards T0087AL044_1_1
309
129
83
61
13
2.97
2.704
T I D
Moult T0087TS363_1
309
135
82
43
21
3.08
2.579
T I D
ORNL-PROSPECT T0087TS088_1
309
309
82
52
8
3.20
2.485
T I D
bioinbgu-seqpprf T0087AL106_1
309
195
81
45
23
2.49
3.127
T I D
CBC-FOLD T0087AL133_1
309
246
81
52
20
2.99
2.621
T I D
josé T0087AL405_1
309
285
81
31
7
2.97
2.638
T I D
SBfold T0087AL381_1
309
107
80
54
13
2.61
2.952
T I D
bioinbgu-seqpmprf T0087AL107_1
309
253
80
30
6
2.75
2.807
T I D
Sternberg T0087AL126_1_2
309
140
80
0
0
2.83
2.730
T I D
Yang-Ansuei T0087TS017_1_1
309
139
79
49
16
3.12
2.453
T I D
Friesner T0087TS414_1
309
309
79
40
6
3.30
2.324
T I D
SAM-T2K T0087AL094_1_1
309
131
78
45
18
2.82
2.671
T I D
Sternberg T0087AL126_1_1
309
135
77
38
17
2.85
2.610
T I D
mprabha T0087TS459_1
309
178
77
1
0
3.00
2.484
T I D
Lee-Jung T0087TS191_1
309
300
77
14
0
3.18
2.348
T I D
SBauto T0087AL382_1
309
111
76
28
14
2.75
2.667
T I D
rost T0087AL077_1
309
269
76
4
0
2.99
2.460
T I D
Ram-Samudrala T0087TS028_1
309
309
76
0
0
3.19
2.310
T I D
Chandonia-Cohen T0087AL150_1
309
246
73
18
7
2.85
2.475
T I D
Tsigelny T0087AL274_1
309
275
73
24
6
2.98
2.370
T I D
Finkelstein T0087AL204_1
309
201
72
30
11
2.39
2.892
T I D
Tatsuya T0087AL329_1
309
104
71
36
13
2.58
2.649
T I D
Levitt T0087TS012_1
309
253
71
6
0
3.35
2.058
T I D
FFAS T0087XA395_1.late
309
284
70
0
0
3.02
2.244
T I D
GenTHREADER T0087AL259_1
309
283
70
3
0
3.45
1.972
T I D
Bystroff T0087TS055_1
309
277
69
31
17
3.26
2.054
T I D
PDB-ISL T0087AL344_1
309
247
69
15
1
3.34
2.006
T I D
Godzik T0087TS197_1
309
151
68
26
21
2.88
2.282
T I D
Reva-Boris T0087AL401_1
309
261
68
2
0
3.15
2.092
T I D
Harrison-Weber T0087TS058_1
309
309
68
2
0
3.40
1.943
T I D
Valencia-CNB T0087AL162_1
309
141
65
23
7
2.91
2.159
T I D
Del-Carpio-Yoshimori T0087TS045_1
309
309
64
11
2
3.05
2.032
T I D
Taylor T0087TS390_1
309
304
64
5
2
3.28
1.893
T I D
SBI-AT T0087TS342_1
309
240
64
7
1
3.05
2.032
T I D
FFAS T0087AL395_1
309
284
64
1
0
2.98
2.078
T I D
Shortle T0087TS001_1
309
224
63
12
3
3.38
1.810
T I D
Gerloff T0087AL003_1_1
309
120
62
27
1
3.16
1.902
T I D
Skolnick-Kolinski T0087TS080_1
309
309
62
1
0
3.40
1.771
T I D
Zhou-HX T0087AL137_1
309
152
61
29
2
2.96
1.993
T I D
Honig-Barry T0087TS042_1
309
309
58
2
1
3.19
1.763
T I D
Bass-Michael T0087TS086_1
309
241
58
0
0
3.10
1.813
T I D
WXW T0087AL273_1
309
192
57
1
0
3.53
1.570
T I D
DNAmining.com/p-map T0087AL170_1
309
181
56
18
1
2.77
1.951
T I D
MRIT-Onizuka T0087AL052_1
309
307
56
5
0
3.04
1.783
T I D
GNM-FR T0087TS161_1
309
309
55
5
0
3.30
1.618
T I D
Gerloff T0087AL003_1_2
309
67
53
0
0
2.43
2.095
T I D
Yang-Ansuei T0087TS017_1_2
309
154
50
4
1
2.88
1.678
T I D
Fugue-Cam T0087AL103_1
309
59
47
3
0
2.98
1.526
T I D
SAM-T2K T0087AL094_1_2
309
95
47
1
0
3.05
1.492
T I D
Walts-Wondrous-Wizards T0087AL044_1_2
309
60
44
0
0
2.98
1.429
T I D
ELAN T0087TS512_1
309
309
41
6
0
3.25
1.224
T I D
SAM-T99 T0087AL111_1
309
65
40
3
0
3.36
1.156
T I D
Raghava-GPS T0087TS018_1u
309
309
38
5
1
2.97
1.238
T I D
SHESTOPALOV T0087AL027_1
309
69
35
7
1
2.81
1.203
T I D
PDB-Blast T0087AL158_1
309
35
26
0
0
2.83
0.887
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001