Sequence Independent Analysis
LGA results for Target: T0087_1

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0087_1 : 74

Models ordered by number of AL4 aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1kvu.-.-) to the target T0087_1


Submitted models


Details about the closest PDB structure to the target T0087_1
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1kvu.-.-
338
119
2.90
9.24
3.971
T I


Models ordered by number of AL4 aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
CBC-FOLD T0087AL133_1
193
163
73
62
26
2.72
2.589
T I D
Walts-Wondrous-Wizards T0087AL044_1_1
193
129
83
61
13
2.97
2.704
T I D
ORNL-PROSPECT T0087TS088_1
193
193
79
60
20
2.81
2.715
T I D
baker T0087TS354_1
193
193
84
57
33
2.85
2.847
T I D
SBfold T0087AL381_1
193
107
80
54
13
2.61
2.952
T I D
Flake&mates T0087TS278_1
193
162
75
51
19
2.98
2.435
T I D
Yang-Ansuei T0087TS017_1_1
193
139
79
49
16
3.12
2.453
T I D
bioinbgu-seqpprf T0087AL106_1
193
144
70
46
22
2.21
3.030
T I D
SAM-T2K T0087AL094_1_1
193
131
78
45
18
2.82
2.671
T I D
Moult T0087TS363_1
193
135
82
43
21
3.08
2.579
T I D
Braun-UTMB T0087TS223_1
193
192
87
40
16
2.82
2.979
T I D
Sternberg-3DPSSM T0087AL132_1
193
165
83
40
10
2.82
2.842
T I D
GMD-SCAI T0087AL361_1
193
163
84
39
15
2.70
3.000
T I D
Sternberg T0087AL126_1_1
193
135
77
38
17
2.85
2.610
T I D
Shortle T0087TS001_1
193
128
69
38
15
3.12
2.143
T I D
Friesner T0087TS414_1
193
193
74
37
3
3.15
2.277
T I D
bioinbgu-gonp T0087AL104_1
193
183
81
36
17
2.94
2.664
T I D
Tatsuya T0087AL329_1
193
104
71
36
13
2.58
2.649
T I D
bioinbgu-gonpm T0087AL105_1
193
183
79
35
16
2.83
2.696
T I D
Cafasp-consensus T0087AL359_1u
193
183
79
35
16
2.83
2.696
T I D
Reva-Boris T0087AL401_1
193
159
61
35
4
2.79
2.111
T I D
Ram-Samudrala T0087TS028_1
193
193
79
32
7
2.76
2.762
T I D
Jones T0087TS023_1
193
152
73
32
7
2.57
2.734
T I D
bioinbgu-seqpmprf T0087AL107_1
193
174
77
32
7
2.82
2.637
T I D
josé T0087AL405_1
193
169
77
31
8
2.78
2.674
T I D
Bass-Michael T0087TS086_1
193
134
50
30
13
2.96
1.634
T I D
Finkelstein T0087AL204_1
193
151
72
30
11
2.39
2.892
T I D
FFAS T0087AL395_1
193
181
60
30
9
3.40
1.714
T I D
Harrison-Weber T0087TS058_1
193
193
72
30
8
2.89
2.408
T I D
SBauto T0087AL382_1
193
100
74
29
14
2.65
2.691
T I D
Wolynes T0087TS032_1
193
193
88
28
13
2.93
2.904
T I D
Levy T0087AL331_1
193
188
91
28
9
3.24
2.725
T I D
BinToHes T0087TS255_1
193
193
82
27
10
2.79
2.837
T I D
SBI-AT T0087TS342_1
193
193
67
27
3
3.14
2.068
T I D
Zhou-HX T0087AL137_1
193
107
53
27
2
3.04
1.688
T I D
Gerloff T0087AL003_1_1
193
120
62
27
1
3.16
1.902
T I D
Godzik T0087TS197_1
193
151
69
26
20
2.84
2.347
T I D
Torda-Andrew T0087TS065_1
193
143
79
26
7
2.64
2.883
T I D
Valencia-CNB T0087AL162_1
193
100
47
26
6
2.98
1.526
T I D
bioinbgu T0087AL093_1
193
171
80
23
1
3.10
2.500
T I D
bioinbgu-prfseq T0087AL108_1
193
171
80
23
1
3.10
2.500
T I D
Fischer-Daniel T0087AL357_1
193
171
80
23
1
3.10
2.500
T I D
FFAS T0087XA395_1.late
193
174
60
22
9
3.40
1.714
T I D
BMERC T0087AL248_1
193
189
82
22
7
2.93
2.706
T I D
SBI-GR T0087TS457_1
193
193
81
22
0
3.03
2.588
T I D
PDB-ISL T0087AL344_1
193
156
60
17
1
3.31
1.760
T I D
BioInfo.PL T0087TS031_1
193
193
72
16
6
3.03
2.300
T I D
Bystroff T0087TS055_1
193
161
52
16
6
3.31
1.525
T I D
WXW T0087AL273_1
193
130
46
16
2
3.08
1.447
T I D
Tsigelny T0087AL274_1
193
175
58
15
5
2.92
1.921
T I D
Honig-Barry T0087TS042_1
193
193
40
14
3
3.42
1.136
T I D
Chandonia-Cohen T0087AL150_1
193
138
57
12
8
2.72
2.021
T I D
GNM-FR T0087TS161_1
193
193
67
10
0
3.48
1.872
T I D
Levitt T0087TS012_1
193
193
74
9
9
2.97
2.410
T I D
ELAN T0087TS512_1
193
193
45
6
1
3.37
1.297
T I D
MRIT-Onizuka T0087AL052_1
193
191
43
6
0
3.63
1.153
T I D
Lee-Jung T0087TS191_1
193
187
59
5
0
3.31
1.730
T I D
Skolnick-Kolinski T0087TS080_1
193
193
56
3
1
2.96
1.830
T I D
Del-Carpio-Yoshimori T0087TS045_1
193
193
42
3
1
3.17
1.284
T I D
SAM-T99 T0087AL111_1
193
65
40
3
0
3.36
1.156
T I D
Taylor T0087TS390_1
193
193
66
1
0
3.07
2.082
T I D
mprabha T0087TS459_1
193
80
54
1
0
2.60
2.000
T I D
rost T0087AL077_1
193
167
48
1
0
3.21
1.450
T I D
GenTHREADER T0087AL259_1
193
174
59
0
0
3.00
1.903
T I D
Sternberg T0087AL126_1_2
193
34
31
0
0
1.62
1.802
T I D
DNAmining.com/p-map T0087AL170_1
193
77
39
0
0
2.50
1.500
T I D
Walts-Wondrous-Wizards T0087AL044_1_2
193
37
29
0
0
2.54
1.098
T I D
Yang-Ansuei T0087TS017_1_2
193
43
28
0
0
2.65
1.018
T I D
Raghava-GPS T0087TS018_1u
193
193
34
0
0
3.27
1.009
T I D
PDB-Blast T0087AL158_1
193
35
28
0
0
3.41
0.798
T I D
Fugue-Cam T0087AL103_1
193
14
13
0
0
1.78
0.691
T I D
Gerloff T0087AL003_1_2
193
0
0
0
0
0
0
T I D
SHESTOPALOV T0087AL027_1
193
0
0
0
0
0
0
T I D
SAM-T2K T0087AL094_1_2
193
0
0
0
0
0
0
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001