Sequence Independent Analysis
LGA results for Target: T0087_2

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0087_2 : 74

Models ordered by number of AL4 aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1a5z.-.-) to the target T0087_2


Submitted models


Details about the closest PDB structure to the target T0087_2
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1a5z.-.-
312
79
3.14
10.13
2.436
T I


Models ordered by number of AL4 aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
Yang-Ansuei T0087TS017_1_2
116
111
50
36
13
3.06
1.582
T I D
Torda-Andrew T0087TS065_1
116
112
43
35
21
2.99
1.392
T I D
Bystroff T0087TS055_1
116
116
47
33
19
2.70
1.679
T I D
baker T0087TS354_1
116
116
55
32
23
3.13
1.703
T I D
Taylor T0087TS390_1
116
111
44
31
22
2.82
1.507
T I D
Flake&mates T0087TS278_1
116
91
39
30
5
2.84
1.327
T I D
ORNL-PROSPECT T0087TS088_1
116
116
43
29
2
2.65
1.564
T I D
Chandonia-Cohen T0087AL150_1
116
108
45
26
1
3.01
1.447
T I D
Finkelstein T0087AL204_1
116
50
40
24
10
3.04
1.274
T I D
CBC-FOLD T0087AL133_1
116
83
37
24
1
2.64
1.350
T I D
WXW T0087AL273_1
116
62
41
23
8
3.01
1.318
T I D
Bass-Michael T0087TS086_1
116
107
44
23
1
2.97
1.433
T I D
bioinbgu-gonpm T0087AL105_1
116
114
32
23
0
2.50
1.231
T I D
BMERC T0087AL248_1
116
115
32
23
0
2.50
1.231
T I D
Cafasp-consensus T0087AL359_1u
116
114
32
23
0
2.50
1.231
T I D
SAM-T2K T0087AL094_1_2
116
95
42
22
2
3.09
1.317
T I D
Wolynes T0087TS032_1
116
116
37
19
0
3.02
1.186
T I D
BinToHes T0087TS255_1
116
116
33
16
0
3.00
1.065
T I D
bioinbgu-seqpprf T0087AL106_1
116
51
30
15
0
3.13
0.929
T I D
Ram-Samudrala T0087TS028_1
116
116
34
14
1
2.99
1.100
T I D
rost T0087AL077_1
116
102
37
13
0
2.72
1.312
T I D
Del-Carpio-Yoshimori T0087TS045_1
116
116
49
12
3
2.79
1.696
T I D
josé T0087AL405_1
116
116
32
12
0
2.89
1.070
T I D
bioinbgu-gonp T0087AL104_1
116
100
33
12
0
3.00
1.065
T I D
Harrison-Weber T0087TS058_1
116
116
31
11
0
3.25
0.925
T I D
Skolnick-Kolinski T0087TS080_1
116
116
38
10
3
3.55
1.041
T I D
MRIT-Onizuka T0087AL052_1
116
116
50
10
2
3.13
1.548
T I D
ELAN T0087TS512_1
116
116
37
10
2
3.19
1.125
T I D
mprabha T0087TS459_1
116
98
50
9
0
2.51
1.916
T I D
Raghava-GPS T0087TS018_1u
116
116
27
9
0
2.83
0.922
T I D
SBI-AT T0087TS342_1
116
47
35
8
2
2.54
1.326
T I D
Gerloff T0087AL003_1_2
116
67
29
8
1
2.99
0.939
T I D
Sternberg T0087AL126_1_2
116
106
52
8
0
3.03
1.661
T I D
Friesner T0087TS414_1
116
116
32
8
0
3.06
1.013
T I D
SHESTOPALOV T0087AL027_1
116
64
33
7
1
2.64
1.204
T I D
BioInfo.PL T0087TS031_1
116
116
36
6
1
3.13
1.115
T I D
GNM-FR T0087TS161_1
116
116
52
6
0
2.81
1.787
T I D
FFAS T0087XA395_1.late
116
110
38
6
0
3.28
1.124
T I D
bioinbgu T0087AL093_1
116
114
34
6
0
3.12
1.056
T I D
bioinbgu-prfseq T0087AL108_1
116
114
34
6
0
3.12
1.056
T I D
Fischer-Daniel T0087AL357_1
116
114
34
6
0
3.12
1.056
T I D
Braun-UTMB T0087TS223_1
116
104
28
5
2
3.27
0.831
T I D
DNAmining.com/p-map T0087AL170_1
116
104
35
5
1
2.79
1.211
T I D
GMD-SCAI T0087AL361_1
116
102
27
5
0
3.08
0.849
T I D
Lee-Jung T0087TS191_1
116
113
52
4
0
3.26
1.548
T I D
bioinbgu-seqpmprf T0087AL107_1
116
79
36
4
0
2.60
1.333
T I D
Honig-Barry T0087TS042_1
116
116
39
3
2
3.19
1.185
T I D
FFAS T0087AL395_1
116
103
39
3
0
3.28
1.154
T I D
Sternberg-3DPSSM T0087AL132_1
116
80
27
3
0
2.64
0.985
T I D
Tsigelny T0087AL274_1
116
100
48
2
1
3.04
1.529
T I D
Shortle T0087TS001_1
116
96
32
2
1
2.89
1.070
T I D
GenTHREADER T0087AL259_1
116
109
38
2
0
3.18
1.159
T I D
Jones T0087TS023_1
116
74
33
2
0
3.03
1.054
T I D
Fugue-Cam T0087AL103_1
116
45
29
1
0
2.98
0.942
T I D
SBauto T0087AL382_1
116
11
11
0
0
0.56
1.667
T I D
Reva-Boris T0087AL401_1
116
102
44
0
0
3.05
1.397
T I D
PDB-ISL T0087AL344_1
116
91
37
0
0
2.80
1.276
T I D
Walts-Wondrous-Wizards T0087AL044_1_2
116
23
21
0
0
1.82
1.094
T I D
SBI-GR T0087TS457_1
116
106
30
0
0
2.83
1.024
T I D
Levitt T0087TS012_1
116
60
23
0
0
2.35
0.939
T I D
Levy T0087AL331_1
116
57
26
0
0
2.78
0.903
T I D
Valencia-CNB T0087AL162_1
116
41
24
0
0
3.10
0.750
T I D
Zhou-HX T0087AL137_1
116
45
24
0
0
3.19
0.729
T I D
Gerloff T0087AL003_1_1
116
0
0
0
0
0
0
T I D
Walts-Wondrous-Wizards T0087AL044_1_1
116
0
0
0
0
0
0
T I D
SAM-T2K T0087AL094_1_1
116
0
0
0
0
0
0
T I D
SAM-T99 T0087AL111_1
116
0
0
0
0
0
0
T I D
Sternberg T0087AL126_1_1
116
0
0
0
0
0
0
T I D
PDB-Blast T0087AL158_1
116
0
0
0
0
0
0
T I D
Tatsuya T0087AL329_1
116
0
0
0
0
0
0
T I D
SBfold T0087AL381_1
116
0
0
0
0
0
0
T I D
Yang-Ansuei T0087TS017_1_1
116
0
0
0
0
0
0
T I D
Godzik T0087TS197_1
116
0
0
0
0
0
0
T I D
Moult T0087TS363_1
116
0
0
0
0
0
0
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001