Sequence Independent Analysis
LGA results for Target: T0089

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0089 : 73

Models ordered by number of AL4 aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1dkg_D) to the target T0089


Submitted models


Details about the closest PDB structure to the target T0089
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1dkg_D
376
247
2.52
14.17
9.441
T I


Models ordered by number of AL4 aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
baker T0089TS354_1
378
378
233
173
124
2.48
9.031
T I D
BioInfo.PL T0089TS031_1
378
378
241
159
128
2.49
9.305
T I D
josé T0089AL405_1
378
322
238
156
124
2.46
9.297
T I D
VENCLOVAS T0089TS406_1
378
288
235
156
120
2.44
9.252
T I D
SAM-T99 T0089AL111_1
378
321
225
156
120
2.49
8.687
T I D
ORNL-PROSPECT T0089TS088_1
378
377
236
155
129
2.48
9.147
T I D
SBauto T0089TS382_1u
378
378
239
155
117
2.49
9.228
T I D
PDB-Blast T0089AL158_1
378
330
233
152
9
2.45
9.137
T I D
FAMS T0089TS500_1
378
360
227
151
117
2.52
8.664
T I D
Levy T0089AL331_1
378
328
225
151
116
2.46
8.789
T I D
Braun-UTMB T0089TS223_1
378
349
240
150
87
2.59
8.922
T I D
Sternberg T0089TS126_1
378
378
240
149
102
2.49
9.266
T I D
Honig-Barry T0089TS042_1
378
378
240
147
72
2.55
9.057
T I D
kitasato-univ. T0089TS047_1
378
358
226
146
116
2.48
8.760
T I D
Sternberg-3DPSSM T0089AL132_1
378
323
226
146
101
2.47
8.794
T I D
Taylor T0089TS390_1
378
378
231
145
78
2.37
9.352
T I D
FFAS T0089AL395_1
378
327
220
143
106
2.48
8.527
T I D
FFAS T0089XA395_1.late
378
327
220
143
106
2.48
8.527
T I D
mGenTHREADER T0089AL260_1
378
331
239
141
113
2.50
9.192
T I D
Godzik T0089TS197_1
378
320
210
141
97
2.43
8.300
T I D
Fugue-Cam T0089AL103_1
378
318
236
140
96
2.54
8.939
T I D
SBfold T0089TS381_1u
378
378
231
128
96
2.43
9.130
T I D
Fischer-Daniel T0089AL357_1
378
311
212
127
92
2.50
8.154
T I D
Cafasp-consensus T0089AL359_1
378
311
212
127
92
2.50
8.154
T I D
rost T0089AL077_1
378
302
201
126
88
2.46
7.852
T I D
bioinbgu T0089AL093_1
378
324
221
124
87
2.51
8.467
T I D
bioinbgu-prfseq T0089AL108_1
378
324
221
124
87
2.51
8.467
T I D
Wolynes T0089TS032_1
378
367
238
120
41
2.40
9.520
T I D
SBI-AT T0089TS342_1
378
376
240
118
86
2.58
8.955
T I D
Zhou-HX T0089AL137_1
378
304
214
117
99
2.45
8.392
T I D
Skolnick-Kolinski-THD T0089TS393_1
378
378
202
111
67
3.06
6.392
T I D
bioinbgu-seqpprf T0089AL106_1
378
343
172
108
67
2.57
6.442
T I D
bioinbgu-seqpmprf T0089AL107_1
378
343
172
108
67
2.57
6.442
T I D
Jones T0089TS023_1
378
378
195
108
45
2.84
6.633
T I D
bioinbgu-gonp T0089AL104_1
378
326
213
106
83
2.44
8.386
T I D
bioinbgu-gonpm T0089AL105_1
378
326
213
106
83
2.44
8.386
T I D
Ram-Samudrala T0089TS028_1
378
378
189
105
60
2.71
6.726
T I D
DNAmining.com/p-map T0089AL170_1
378
152
128
103
77
2.44
5.039
T I D
Walts-Wondrous-Wizards T0089AL044_1_2
378
165
137
100
85
2.56
5.150
T I D
SAM-T2K T0089AL094_1
378
307
223
100
78
2.50
8.577
T I D
Chandonia-Cohen T0089AL150_1
378
160
133
98
82
2.49
5.135
T I D
Bass-Michael T0089TS086_1
378
326
214
95
44
2.42
8.492
T I D
GenTHREADER T0089AL259_1
378
163
129
91
67
2.53
4.905
T I D
GMD-SCAI T0089AL361_1
378
315
201
83
37
2.51
7.701
T I D
Skolnick-Kolinski T0089TS080_1
378
378
144
82
39
3.19
4.377
T I D
UCLA-DOE T0089AL229_1_2
378
151
122
64
32
2.36
4.959
T I D
Levitt T0089TS012_1
378
369
235
63
45
2.50
9.038
T I D
Lee-Jung T0089TS191_1
378
327
207
60
38
2.54
7.841
T I D
Yang-Ansuei T0089TS017_1
378
363
229
57
43
2.66
8.297
T I D
Sternberg-3D-JIGSAW T0089TS125_1
378
329
204
54
41
2.54
7.727
T I D
Walts-Wondrous-Wizards T0089AL044_1_1
378
163
101
52
36
2.22
4.353
T I D
UCLA-DOE T0089AL229_1_1
378
159
90
44
22
2.35
3.673
T I D
SBI-GR T0089TS457_1
378
362
229
31
10
2.65
8.327
T I D
Vajda T0089TS241_1
378
368
231
30
18
2.53
8.783
T I D
Torda-Andrew T0089TS065_1
378
354
89
30
2
2.92
2.947
T I D
GNM-FR T0089TS161_1
378
378
83
27
0
3.02
2.660
T I D
Friesner T0089TS414_1
378
378
60
25
1
3.20
1.818
T I D
Moult T0089TS363_1
378
312
203
24
16
2.40
8.120
T I D
BinToHes T0089TS255_1
378
378
225
22
15
2.50
8.654
T I D
Reva-Boris T0089AL401_1
378
333
58
19
1
3.12
1.801
T I D
Isites-Server T0089TS216_1
378
378
66
9
4
3.15
2.031
T I D
Flake&mates T0089TS278_1
378
230
90
8
0
2.94
2.961
T I D
CBC-FOLD T0089AL133_1
378
221
59
2
0
2.84
2.007
T I D
SDSC1 T0089TS186_1
378
221
59
2
0
2.84
2.007
T I D
Tsigelny T0089AL274_1
378
282
72
1
1
3.02
2.308
T I D
ssPsi/Elofsson-Arne T0089AL127_1
378
346
80
1
0
2.81
2.749
T I D
MRIT-Onizuka T0089AL052_1
378
301
60
1
0
3.30
1.765
T I D
Bystroff T0089TS055_1
378
378
55
1
0
3.35
1.594
T I D
SHESTOPALOV T0089AL027_1_2
378
79
49
0
0
2.59
1.822
T I D
Del-Carpio-Yoshimori T0089TS045_1
378
378
61
0
0
3.31
1.789
T I D
WXW T0089AL273_1
378
241
53
0
0
3.00
1.710
T I D
SHESTOPALOV T0089AL027_1_1
378
78
47
0
0
3.09
1.473
T I D
Raghava-GPS T0089TS018_1u
378
378
35
0
0
3.16
1.074
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001