Sequence Independent Analysis
LGA results for Target: T0089_2

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0089_2 : 73

Models ordered by number of AL4 aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1auy.A.-) to the target T0089_2


Submitted models


Details about the closest PDB structure to the target T0089_2
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1auy.A.-
163
71
2.76
12.68
2.480
T I


Models ordered by number of AL4 aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
PDB-Blast T0089AL158_1
81
59
32
28
1
2.15
1.422
T I D
Vajda T0089TS241_1
81
81
37
28
1
2.76
1.294
T I D
Friesner T0089TS414_1
81
81
45
27
0
3.01
1.447
T I D
bioinbgu-gonp T0089AL104_1
81
73
33
27
0
2.43
1.304
T I D
bioinbgu-gonpm T0089AL105_1
81
73
33
27
0
2.43
1.304
T I D
Jones T0089TS023_1
81
81
35
25
19
2.67
1.264
T I D
SBI-GR T0089TS457_1
81
81
35
25
0
2.66
1.268
T I D
Moult T0089TS363_1
81
66
30
25
0
2.57
1.124
T I D
Skolnick-Kolinski T0089TS080_1
81
81
28
24
0
2.62
1.029
T I D
Zhou-HX T0089AL137_1
81
65
35
23
17
2.59
1.301
T I D
SHESTOPALOV T0089AL027_1_1
81
43
28
23
0
2.35
1.143
T I D
Raghava-GPS T0089TS018_1u
81
81
25
22
19
2.09
1.142
T I D
Isites-Server T0089TS216_1
81
81
33
22
5
2.85
1.119
T I D
SAM-T2K T0089AL094_1
81
62
36
22
1
3.08
1.132
T I D
Braun-UTMB T0089TS223_1
81
54
28
21
17
2.05
1.302
T I D
Torda-Andrew T0089TS065_1
81
76
35
21
0
2.28
1.471
T I D
bioinbgu T0089AL093_1
81
52
30
20
1
2.11
1.357
T I D
bioinbgu-prfseq T0089AL108_1
81
52
30
20
1
2.11
1.357
T I D
SAM-T99 T0089AL111_1
81
54
33
20
1
2.34
1.352
T I D
Sternberg T0089TS126_1
81
81
30
20
0
2.11
1.357
T I D
Walts-Wondrous-Wizards T0089AL044_1_1
81
49
30
20
0
2.12
1.351
T I D
FFAS T0089AL395_1
81
53
30
20
0
2.14
1.339
T I D
FFAS T0089XA395_1.late
81
53
30
20
0
2.14
1.339
T I D
Lee-Jung T0089TS191_1
81
70
34
20
0
2.63
1.245
T I D
Fischer-Daniel T0089AL357_1
81
51
31
20
0
2.47
1.206
T I D
Cafasp-consensus T0089AL359_1
81
51
31
20
0
2.47
1.206
T I D
josé T0089AL405_1
81
57
31
19
17
2.35
1.265
T I D
ORNL-PROSPECT T0089TS088_1
81
81
32
19
17
2.65
1.164
T I D
Skolnick-Kolinski-THD T0089TS393_1
81
81
30
19
13
2.66
1.087
T I D
CBC-FOLD T0089AL133_1
81
72
28
19
0
2.05
1.302
T I D
SDSC1 T0089TS186_1
81
72
28
19
0
2.05
1.302
T I D
Reva-Boris T0089AL401_1
81
74
31
19
0
2.81
1.065
T I D
Bystroff T0089TS055_1
81
81
29
17
11
3.26
0.863
T I D
baker T0089TS354_1
81
81
30
17
0
2.73
1.060
T I D
ssPsi/Elofsson-Arne T0089AL127_1
81
63
37
16
0
2.80
1.276
T I D
Godzik T0089TS197_1
81
60
30
13
1
2.46
1.172
T I D
rost T0089AL077_1
81
49
30
12
1
2.12
1.351
T I D
Del-Carpio-Yoshimori T0089TS045_1
81
81
31
12
1
3.32
0.906
T I D
Sternberg-3DPSSM T0089AL132_1
81
49
30
12
0
2.15
1.333
T I D
Levitt T0089TS012_1
81
81
38
9
0
2.86
1.284
T I D
GNM-FR T0089TS161_1
81
81
36
8
0
3.11
1.121
T I D
Ram-Samudrala T0089TS028_1
81
81
31
5
0
2.60
1.148
T I D
BioInfo.PL T0089TS031_1
81
81
37
4
0
3.00
1.194
T I D
Yang-Ansuei T0089TS017_1
81
81
26
4
0
3.25
0.776
T I D
Wolynes T0089TS032_1
81
81
33
3
0
2.27
1.392
T I D
Levy T0089AL331_1
81
53
28
3
0
1.96
1.359
T I D
Fugue-Cam T0089AL103_1
81
62
35
3
0
2.67
1.264
T I D
SBfold T0089TS381_1u
81
81
33
3
0
2.59
1.227
T I D
mGenTHREADER T0089AL260_1
81
62
33
3
0
2.90
1.100
T I D
BinToHes T0089TS255_1
81
81
30
3
0
3.58
0.815
T I D
Honig-Barry T0089TS042_1
81
81
34
2
1
2.62
1.250
T I D
Bass-Michael T0089TS086_1
81
69
33
2
0
2.33
1.358
T I D
Flake&mates T0089TS278_1
81
37
26
1
1
2.97
0.847
T I D
Taylor T0089TS390_1
81
81
34
1
0
2.48
1.318
T I D
Tsigelny T0089AL274_1
81
77
33
1
0
2.59
1.227
T I D
GMD-SCAI T0089AL361_1
81
62
29
1
0
2.32
1.198
T I D
SBauto T0089TS382_1u
81
81
32
1
0
2.62
1.176
T I D
UCLA-DOE T0089AL229_1_1
81
70
29
0
0
2.06
1.343
T I D
VENCLOVAS T0089TS406_1
81
40
30
0
0
2.23
1.288
T I D
Sternberg-3D-JIGSAW T0089TS125_1
81
81
39
0
0
2.95
1.279
T I D
SBI-AT T0089TS342_1
81
81
36
0
0
2.82
1.233
T I D
FAMS T0089TS500_1
81
81
32
0
0
2.66
1.159
T I D
kitasato-univ. T0089TS047_1
81
81
35
0
0
2.97
1.140
T I D
WXW T0089AL273_1
81
58
26
0
0
2.56
0.977
T I D
bioinbgu-seqpprf T0089AL106_1
81
74
29
0
0
3.12
0.901
T I D
bioinbgu-seqpmprf T0089AL107_1
81
74
29
0
0
3.12
0.901
T I D
MRIT-Onizuka T0089AL052_1
81
63
26
0
0
3.02
0.833
T I D
SHESTOPALOV T0089AL027_1_2
81
0
0
0
0
0
0
T I D
Walts-Wondrous-Wizards T0089AL044_1_2
81
0
0
0
0
0
0
T I D
Chandonia-Cohen T0089AL150_1
81
0
0
0
0
0
0
T I D
DNAmining.com/p-map T0089AL170_1
81
0
0
0
0
0
0
T I D
UCLA-DOE T0089AL229_1_2
81
0
0
0
0
0
0
T I D
GenTHREADER T0089AL259_1
81
0
0
0
0
0
0
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001