Sequence Independent Analysis
LGA results for Target: T0090

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0090 : 80

Models ordered by number of AL4 aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1mut.__14) to the target T0090


Submitted models


Details about the closest PDB structure to the target T0090
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1mut.__14
129
110
2.95
16.36
3.605
T I


Models ordered by number of AL4 aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
Jones T0090TS023_1
199
147
100
83
54
2.80
3.448
T I D
Dunbrack T0090TS169_1
199
120
102
83
53
2.74
3.592
T I D
SBauto T0090TS382_1u
199
199
106
82
50
2.84
3.605
T I D
Walts-Wondrous-Wizards T0090AL044_1
199
121
99
82
50
2.77
3.449
T I D
blundell-tl T0090TS095_1
199
133
100
82
33
2.71
3.559
T I D
GenTHREADER T0090AL259_1
199
120
102
81
52
2.74
3.592
T I D
ORNL-PROSPECT T0090TS088_1
199
131
92
81
27
2.65
3.345
T I D
SBI-AT T0090AL342_1
199
119
92
80
62
2.58
3.433
T I D
baker T0090TS354_1
199
199
100
79
52
2.82
3.425
T I D
BioInfo.PL T0090TS031_1
199
151
107
78
45
2.86
3.615
T I D
koehl T0090TS426_1
199
189
104
78
43
2.91
3.455
T I D
Yang-Ansuei T0090TS017_1
199
132
97
77
37
2.82
3.322
T I D
josé T0090AL405_1
199
119
99
77
20
2.86
3.345
T I D
Bateman T0090TS279_1
199
135
101
76
50
2.80
3.483
T I D
FFAS T0090AL395_1
199
120
98
75
50
2.77
3.415
T I D
FFAS T0090XA395_1.late
199
120
98
75
50
2.77
3.415
T I D
Cafasp-consensus T0090TS359_1
199
150
104
75
49
2.79
3.599
T I D
Sternberg T0090TS126_1
199
135
97
75
44
2.91
3.223
T I D
Levitt T0090TS012_1
199
199
107
75
38
2.87
3.603
T I D
mGenTHREADER T0090AL260_1
199
120
99
74
37
2.80
3.414
T I D
LAMBERT-Christophe T0090TS218_1
199
134
102
73
41
2.90
3.400
T I D
Godzik T0090TS197_1
199
129
104
72
42
2.90
3.467
T I D
Murzin T0090TS384_1
199
199
107
71
39
2.81
3.677
T I D
Braun-UTMB T0090TS223_1
199
135
93
70
47
2.68
3.345
T I D
rost T0090AL077_1
199
119
96
70
38
2.69
3.441
T I D
Sali-Andrej T0090TS237_1
199
133
101
70
36
2.83
3.447
T I D
Fugue-Cam T0090AL103_1
199
119
92
70
31
2.65
3.345
T I D
SBfold T0090TS381_1
199
199
103
68
40
2.90
3.433
T I D
zhu T0090TS352_1
199
199
87
68
40
2.68
3.129
T I D
Ram-Samudrala T0090TS028_1
199
199
101
68
23
2.75
3.544
T I D
Harrison-Weber T0090TS058_1
199
127
97
67
49
2.87
3.266
T I D
SBfold T0090TS381_1u
199
199
98
66
45
2.86
3.311
T I D
BinToHes T0090TS255_1
199
199
103
65
19
3.05
3.270
T I D
bioinbgu-seqpmprf T0090AL107_1
199
92
75
64
41
2.46
2.930
T I D
SAM-T99 T0090AL111_1
199
102
82
63
36
2.58
3.060
T I D
HANRAM-CDFD T0090TS312_1
199
149
90
63
35
2.86
3.041
T I D
Sternberg-3DPSSM T0090AL132_1
199
111
87
63
28
2.64
3.175
T I D
Vajda T0090TS241_1
199
121
93
62
34
2.77
3.240
T I D
Sternberg-3D-JIGSAW T0090TS125_1
199
155
89
62
29
2.68
3.201
T I D
PDB-Blast T0090AL158_1
199
100
83
62
27
2.67
2.996
T I D
bioinbgu-seqpprf T0090AL106_1
199
113
91
61
42
2.64
3.321
T I D
Fischer-Daniel T0090AL357_1
199
109
87
61
42
2.53
3.308
T I D
Wolynes T0090TS032_1
199
122
94
61
34
2.70
3.357
T I D
Taylor T0090TS390_1
199
191
100
61
26
2.75
3.509
T I D
Skolnick-Kolinski-THD T0090TS393_1
199
199
102
61
23
2.80
3.517
T I D
Moult T0090TS363_1
199
107
94
60
27
2.79
3.253
T I D
bioinbgu T0090AL093_1
199
102
85
59
28
2.69
3.047
T I D
bioinbgu-prfseq T0090AL108_1
199
102
85
59
28
2.69
3.047
T I D
FAMS T0090TS500_1
199
109
83
59
25
2.68
2.986
T I D
bioinbgu-gonpm T0090AL105_1
199
90
71
57
22
2.64
2.591
T I D
kitasato-univ. T0090TS047_1
199
109
81
56
24
2.70
2.893
T I D
VENCLOVAS T0090TS406_1
199
112
88
55
38
2.76
3.077
T I D
CBC-FOLD T0090TS133_1_2
199
107
76
54
20
2.84
2.585
T I D
Lee-Jung T0090TS191_1
199
118
97
48
14
2.84
3.299
T I D
Honig-Barry T0090TS042_1
199
122
80
44
20
3.05
2.540
T I D
GMD-SCAI T0090AL361_1
199
118
95
42
14
2.64
3.467
T I D
Friesner T0090TS414_1
199
144
88
34
14
2.94
2.895
T I D
Levy T0090AL331_1
199
71
67
34
10
2.77
2.334
T I D
SAM-T2K T0090AL094_1
199
103
81
20
18
2.67
2.924
T I D
Reva-Boris T0090AL401_1
199
159
36
9
2
3.27
1.068
T I D
MRIT-Onizuka T0090AL052_1
199
198
37
9
0
3.36
1.069
T I D
Raghava-GPS T0090TS018_1u
199
199
28
8
0
3.00
0.903
T I D
Tsigelny T0090AL274_1
199
113
40
6
3
3.07
1.262
T I D
UCLA-DOE T0090AL229_1
199
87
75
6
1
2.89
2.508
T I D
Yoon T0090TS152_1
199
199
52
6
1
3.33
1.516
T I D
TUDELFT T0090TS155_1
199
198
42
5
1
3.54
1.154
T I D
ssPsi/Elofsson-Arne T0090AL127_1
199
192
34
5
0
3.11
1.059
T I D
Ho-Kai-Ming T0090TS375_1
199
199
42
2
1
3.09
1.317
T I D
Bystroff T0090TS055_1
199
155
51
2
0
3.08
1.604
T I D
Flake&mates T0090TS278_1
199
157
41
2
0
2.78
1.424
T I D
Isites-Server T0090TS216_1
199
199
45
1
0
2.76
1.573
T I D
GNM-FR T0090TS161_1
199
199
43
0
0
2.95
1.410
T I D
Del-Carpio-Yoshimori T0090TS045_1
199
199
39
0
0
2.76
1.364
T I D
Torda-Andrew T0090TS065_1
199
144
38
0
0
2.80
1.310
T I D
bioinbgu-gonp T0090AL104_1
199
173
38
0
0
3.17
1.162
T I D
CBC-FOLD T0090TS133_1_1
199
60
25
0
0
2.76
0.874
T I D
CBC-FOLD T0090TS133_1_3
199
32
26
0
0
3.06
0.823
T I D
Pan T0090AL010_1_3
199
33
24
0
0
2.82
0.822
T I D
Pan T0090AL010_1_1
199
34
25
0
0
3.03
0.799
T I D
Pan T0090AL010_1_2
199
21
19
0
0
2.76
0.664
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001