Sequence Independent Analysis
LGA results for Target: T0099
Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms
Total number of 3D " MODELS 1 " submitted for target T0099 : 88
Models ordered by number of correctly aligned residues (AL0)
AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE
Alignment details
Closest PDB structure (1shf_B) to the target T0099
Submitted models
Details about the closest PDB structure to the target T0099
| PDB structure |
N_AA |
N(dist=5.0) |
RMSD(N) |
Seq_Id |
LGA_Q |
PLOTS |
| 1shf_B |
59 |
48 |
2.80 |
43.75 |
1.657 |
T I |
Models ordered by number of correctly aligned residues (AL0)
| GROUP Name |
MODEL Number |
NT |
NP |
N(dist=5.0) |
AL4 |
AL0 |
RMSD(N) |
LGA_Q |
PLOTS |
| SBI-jz |
T0099TS468_1 |
56 |
56 |
46 |
38 |
35 |
2.63 |
1.685 |
T I D |
| Zemla-Joanna |
T0099TS330_1 |
56 |
56 |
48 |
36 |
35 |
2.86 |
1.622 |
T I D |
| kitasato-univ. |
T0099TS047_1 |
56 |
56 |
47 |
36 |
35 |
2.83 |
1.604 |
T I D |
| TUDELFT |
T0099TS155_1 |
56 |
56 |
45 |
39 |
34 |
2.60 |
1.667 |
T I D |
| Braun-UTMB |
T0099TS223_1 |
56 |
56 |
45 |
38 |
34 |
2.64 |
1.642 |
T I D |
| Dlakic-Mensur |
T0099TS118_1u |
56 |
56 |
46 |
37 |
34 |
2.64 |
1.679 |
T I D |
| ORNL-PROSPECT |
T0099TS088_1 |
56 |
56 |
46 |
37 |
34 |
2.69 |
1.649 |
T I D |
| blundell-tl |
T0099TS095_1 |
56 |
56 |
45 |
37 |
34 |
2.65 |
1.636 |
T I D |
| GenTHREADER |
T0099AL259_1 |
56 |
56 |
47 |
37 |
34 |
2.85 |
1.593 |
T I D |
| Levitt |
T0099TS012_1 |
56 |
56 |
46 |
37 |
34 |
2.80 |
1.586 |
T I D |
| Sali-Andrej |
T0099TS237_1 |
56 |
56 |
46 |
36 |
34 |
2.66 |
1.667 |
T I D |
| Dunbrack |
T0099TS169_1 |
56 |
56 |
46 |
36 |
34 |
2.78 |
1.597 |
T I D |
| Zhou-HX |
T0099AL137_1 |
56 |
55 |
44 |
35 |
34 |
2.58 |
1.642 |
T I D |
| bioinbgu |
T0099AL093_1 |
56 |
56 |
46 |
35 |
34 |
2.75 |
1.614 |
T I D |
| Fischer-Daniel |
T0099AL357_1 |
56 |
56 |
46 |
35 |
34 |
2.75 |
1.614 |
T I D |
| josé |
T0099AL405_1 |
56 |
56 |
46 |
35 |
34 |
2.75 |
1.614 |
T I D |
| Torda-Andrew |
T0099TS065_1 |
56 |
56 |
45 |
38 |
33 |
2.51 |
1.724 |
T I D |
| SBI-GR |
T0099TS457_1 |
56 |
56 |
47 |
38 |
33 |
2.89 |
1.572 |
T I D |
| rost |
T0099TS077_1 |
56 |
56 |
44 |
37 |
33 |
2.42 |
1.746 |
T I D |
| TUDELFT |
T0099TS155_1u |
56 |
56 |
44 |
37 |
33 |
2.42 |
1.746 |
T I D |
| Friesner |
T0099TS414_1 |
56 |
56 |
45 |
37 |
33 |
2.57 |
1.685 |
T I D |
| Hogue-Feldman |
T0099TS090_1 |
56 |
56 |
46 |
36 |
33 |
2.77 |
1.603 |
T I D |
| Sternberg-3D-JIGSAW |
T0099TS125_1 |
56 |
55 |
46 |
35 |
33 |
2.77 |
1.603 |
T I D |
| Sternberg |
T0099TS126_1 |
56 |
56 |
46 |
34 |
33 |
2.65 |
1.673 |
T I D |
| MSI |
T0099TS447_1 |
56 |
56 |
48 |
34 |
33 |
2.81 |
1.649 |
T I D |
| Reva-Boris |
T0099AL401_1 |
56 |
56 |
47 |
34 |
33 |
2.76 |
1.643 |
T I D |
| DNAmining.com/p-map |
T0099AL170_1 |
56 |
55 |
43 |
34 |
33 |
2.54 |
1.629 |
T I D |
| bioinbgu-gonpm |
T0099AL105_1 |
56 |
55 |
46 |
34 |
33 |
2.78 |
1.597 |
T I D |
| bioinbgu-seqpmprf |
T0099AL107_1 |
56 |
55 |
46 |
34 |
33 |
2.81 |
1.581 |
T I D |
| GNM-FR |
T0099TS161_1 |
56 |
56 |
46 |
36 |
32 |
2.68 |
1.655 |
T I D |
| Honig-Barry |
T0099TS042_1 |
56 |
56 |
44 |
36 |
32 |
2.61 |
1.624 |
T I D |
| Bass-Michael |
T0099TS086_1 |
56 |
54 |
45 |
36 |
32 |
2.70 |
1.607 |
T I D |
| YASARA |
T0099TS465_1 |
56 |
56 |
42 |
35 |
32 |
2.47 |
1.634 |
T I D |
| bioinbgu-gonp |
T0099AL104_1 |
56 |
55 |
46 |
35 |
32 |
2.87 |
1.549 |
T I D |
| VENCLOVAS |
T0099TS406_1 |
56 |
56 |
45 |
33 |
32 |
2.61 |
1.661 |
T I D |
| PDB-Blast |
T0099AL158_1 |
56 |
54 |
44 |
33 |
32 |
2.68 |
1.583 |
T I D |
| CHEN-WENDY |
T0099TS429_1 |
56 |
56 |
43 |
36 |
31 |
2.38 |
1.734 |
T I D |
| Vajda |
T0099TS241_1 |
56 |
56 |
46 |
36 |
31 |
2.78 |
1.597 |
T I D |
| Cafasp-consensus |
T0099TS359_1 |
56 |
56 |
46 |
33 |
31 |
2.80 |
1.586 |
T I D |
| Yoon |
T0099TS152_1 |
56 |
56 |
47 |
33 |
31 |
2.95 |
1.541 |
T I D |
| FAMS |
T0099TS500_1 |
56 |
54 |
44 |
33 |
31 |
2.77 |
1.533 |
T I D |
| Pan |
T0099AL010_1 |
56 |
53 |
42 |
33 |
31 |
2.67 |
1.516 |
T I D |
| Godzik |
T0099TS197_1 |
56 |
55 |
45 |
33 |
31 |
2.92 |
1.490 |
T I D |
| Yang-Ansuei |
T0099TS017_1 |
56 |
53 |
44 |
32 |
31 |
2.87 |
1.481 |
T I D |
| Lai |
T0099TS341_1u |
56 |
56 |
44 |
35 |
30 |
2.65 |
1.600 |
T I D |
| Noguchi |
T0099AL453_1 |
56 |
56 |
46 |
35 |
30 |
2.82 |
1.575 |
T I D |
| Fugue-Cam |
T0099AL103_1 |
56 |
53 |
42 |
34 |
30 |
2.61 |
1.550 |
T I D |
| Sternberg-3DPSSM |
T0099AL132_1 |
56 |
56 |
45 |
34 |
30 |
2.85 |
1.525 |
T I D |
| SDSC1 |
T0099TS186_1 |
56 |
54 |
44 |
33 |
30 |
2.74 |
1.549 |
T I D |
| GMD-SCAI |
T0099AL361_1 |
56 |
55 |
45 |
31 |
30 |
2.92 |
1.490 |
T I D |
| Barton |
T0099AL173_1 |
56 |
51 |
42 |
31 |
30 |
2.83 |
1.433 |
T I D |
| Tsigelny |
T0099AL274_1 |
56 |
55 |
44 |
36 |
29 |
2.67 |
1.588 |
T I D |
| bioinbgu-seqpprf |
T0099AL106_1 |
56 |
55 |
44 |
35 |
29 |
2.81 |
1.512 |
T I D |
| ssPsi/Elofsson-Arne |
T0099AL127_1 |
56 |
55 |
45 |
34 |
29 |
2.78 |
1.562 |
T I D |
| UCLA-DOE |
T0099AL229_1 |
56 |
52 |
41 |
34 |
29 |
2.70 |
1.464 |
T I D |
| Walts-Wondrous-Wizards |
T0099AL044_1 |
56 |
55 |
45 |
32 |
29 |
2.75 |
1.579 |
T I D |
| SAM-T2K |
T0099TS094_1 |
56 |
56 |
46 |
32 |
29 |
2.84 |
1.565 |
T I D |
| bioinbgu-prfseq |
T0099AL108_1 |
56 |
56 |
46 |
36 |
28 |
2.81 |
1.581 |
T I D |
| Ram-Samudrala |
T0099TS028_1 |
56 |
56 |
45 |
35 |
28 |
2.84 |
1.531 |
T I D |
| SBI-AT |
T0099AL342_1 |
56 |
56 |
45 |
32 |
27 |
2.89 |
1.505 |
T I D |
| koehl |
T0099TS426_1 |
56 |
56 |
45 |
32 |
27 |
2.89 |
1.505 |
T I D |
| MRIT-Onizuka |
T0099AL052_1 |
56 |
56 |
43 |
32 |
27 |
2.85 |
1.458 |
T I D |
| SBfold |
T0099TS381_1u |
56 |
56 |
42 |
30 |
27 |
2.79 |
1.453 |
T I D |
| Flake&mates |
T0099TS278_1 |
56 |
54 |
45 |
33 |
26 |
2.81 |
1.546 |
T I D |
| Skolnick-Kolinski-THD |
T0099TS393_1 |
56 |
56 |
42 |
33 |
26 |
2.89 |
1.405 |
T I D |
| SAM-T99 |
T0099AL111_1 |
56 |
50 |
40 |
30 |
26 |
2.72 |
1.418 |
T I D |
| LAMBERT-Christophe |
T0099TS218_1 |
56 |
56 |
43 |
30 |
26 |
2.96 |
1.405 |
T I D |
| Elber-Meller-2000 |
T0099AL280_1 |
56 |
53 |
45 |
36 |
25 |
2.71 |
1.601 |
T I D |
| Lee-Jung |
T0099TS191_1 |
56 |
56 |
44 |
34 |
25 |
2.82 |
1.507 |
T I D |
| CBC-FOLD |
T0099TS133_1 |
56 |
56 |
41 |
31 |
25 |
2.66 |
1.486 |
T I D |
| InforMax |
T0099TS022_1 |
56 |
54 |
42 |
31 |
24 |
2.74 |
1.479 |
T I D |
| CBC-FOLD |
T0099TS133_1u |
56 |
56 |
39 |
30 |
24 |
2.59 |
1.450 |
T I D |
| mGenTHREADER |
T0099AL260_1 |
56 |
56 |
42 |
33 |
23 |
2.58 |
1.567 |
T I D |
| Harrison-Weber |
T0099TS058_1 |
56 |
55 |
42 |
31 |
23 |
2.91 |
1.395 |
T I D |
| Wolynes |
T0099TS032_1 |
56 |
56 |
38 |
25 |
21 |
3.06 |
1.203 |
T I D |
| SBauto |
T0099TS382_1u |
56 |
56 |
38 |
32 |
14 |
2.73 |
1.343 |
T I D |
| SDSC2:Reddy-Bourne |
T0099TS187_1u |
56 |
25 |
21 |
18 |
14 |
2.53 |
0.798 |
T I D |
| zhu |
T0099TS352_1 |
56 |
55 |
36 |
24 |
7 |
3.22 |
1.084 |
T I D |
| ELAN |
T0099TS512_1 |
56 |
56 |
27 |
17 |
7 |
3.10 |
0.844 |
T I D |
| Chodera-John |
T0099TS471_1 |
56 |
56 |
35 |
25 |
2 |
3.05 |
1.111 |
T I D |
| HeadGordon-Teresa |
T0099TS383_1 |
56 |
56 |
30 |
20 |
2 |
2.86 |
1.014 |
T I D |
| Del-Carpio-Yoshimori |
T0099TS045_1 |
56 |
56 |
29 |
14 |
2 |
3.14 |
0.895 |
T I D |
| WXW |
T0099AL273_1 |
56 |
47 |
19 |
7 |
1 |
3.51 |
0.526 |
T I D |
| BinToHes |
T0099TS255_1 |
56 |
56 |
43 |
35 |
0 |
2.65 |
1.564 |
T I D |
| Jones-Ab |
T0099TS281_1 |
56 |
56 |
27 |
7 |
0 |
2.96 |
0.882 |
T I D |
| Bystroff |
T0099TS055_1 |
56 |
56 |
20 |
7 |
0 |
3.30 |
0.588 |
T I D |
| Isites-Server |
T0099TS216_1 |
56 |
56 |
20 |
7 |
0 |
3.30 |
0.588 |
T I D |
| Raghava-GPS |
T0099TS018_1u |
56 |
56 |
16 |
1 |
0 |
3.13 |
0.495 |
T I D |
NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition
Adam Zemla, 03/27/2001