Sequence Independent Analysis
LGA results for Target: T0099

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0099 : 88

Models ordered by number of correctly aligned residues (AL0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1shf_B) to the target T0099


Submitted models


Details about the closest PDB structure to the target T0099
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1shf_B
59
48
2.80
43.75
1.657
T I


Models ordered by number of correctly aligned residues (AL0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
SBI-jz T0099TS468_1
56
56
46
38
35
2.63
1.685
T I D
Zemla-Joanna T0099TS330_1
56
56
48
36
35
2.86
1.622
T I D
kitasato-univ. T0099TS047_1
56
56
47
36
35
2.83
1.604
T I D
TUDELFT T0099TS155_1
56
56
45
39
34
2.60
1.667
T I D
Braun-UTMB T0099TS223_1
56
56
45
38
34
2.64
1.642
T I D
Dlakic-Mensur T0099TS118_1u
56
56
46
37
34
2.64
1.679
T I D
ORNL-PROSPECT T0099TS088_1
56
56
46
37
34
2.69
1.649
T I D
blundell-tl T0099TS095_1
56
56
45
37
34
2.65
1.636
T I D
GenTHREADER T0099AL259_1
56
56
47
37
34
2.85
1.593
T I D
Levitt T0099TS012_1
56
56
46
37
34
2.80
1.586
T I D
Sali-Andrej T0099TS237_1
56
56
46
36
34
2.66
1.667
T I D
Dunbrack T0099TS169_1
56
56
46
36
34
2.78
1.597
T I D
Zhou-HX T0099AL137_1
56
55
44
35
34
2.58
1.642
T I D
bioinbgu T0099AL093_1
56
56
46
35
34
2.75
1.614
T I D
Fischer-Daniel T0099AL357_1
56
56
46
35
34
2.75
1.614
T I D
josé T0099AL405_1
56
56
46
35
34
2.75
1.614
T I D
Torda-Andrew T0099TS065_1
56
56
45
38
33
2.51
1.724
T I D
SBI-GR T0099TS457_1
56
56
47
38
33
2.89
1.572
T I D
rost T0099TS077_1
56
56
44
37
33
2.42
1.746
T I D
TUDELFT T0099TS155_1u
56
56
44
37
33
2.42
1.746
T I D
Friesner T0099TS414_1
56
56
45
37
33
2.57
1.685
T I D
Hogue-Feldman T0099TS090_1
56
56
46
36
33
2.77
1.603
T I D
Sternberg-3D-JIGSAW T0099TS125_1
56
55
46
35
33
2.77
1.603
T I D
Sternberg T0099TS126_1
56
56
46
34
33
2.65
1.673
T I D
MSI T0099TS447_1
56
56
48
34
33
2.81
1.649
T I D
Reva-Boris T0099AL401_1
56
56
47
34
33
2.76
1.643
T I D
DNAmining.com/p-map T0099AL170_1
56
55
43
34
33
2.54
1.629
T I D
bioinbgu-gonpm T0099AL105_1
56
55
46
34
33
2.78
1.597
T I D
bioinbgu-seqpmprf T0099AL107_1
56
55
46
34
33
2.81
1.581
T I D
GNM-FR T0099TS161_1
56
56
46
36
32
2.68
1.655
T I D
Honig-Barry T0099TS042_1
56
56
44
36
32
2.61
1.624
T I D
Bass-Michael T0099TS086_1
56
54
45
36
32
2.70
1.607
T I D
YASARA T0099TS465_1
56
56
42
35
32
2.47
1.634
T I D
bioinbgu-gonp T0099AL104_1
56
55
46
35
32
2.87
1.549
T I D
VENCLOVAS T0099TS406_1
56
56
45
33
32
2.61
1.661
T I D
PDB-Blast T0099AL158_1
56
54
44
33
32
2.68
1.583
T I D
CHEN-WENDY T0099TS429_1
56
56
43
36
31
2.38
1.734
T I D
Vajda T0099TS241_1
56
56
46
36
31
2.78
1.597
T I D
Cafasp-consensus T0099TS359_1
56
56
46
33
31
2.80
1.586
T I D
Yoon T0099TS152_1
56
56
47
33
31
2.95
1.541
T I D
FAMS T0099TS500_1
56
54
44
33
31
2.77
1.533
T I D
Pan T0099AL010_1
56
53
42
33
31
2.67
1.516
T I D
Godzik T0099TS197_1
56
55
45
33
31
2.92
1.490
T I D
Yang-Ansuei T0099TS017_1
56
53
44
32
31
2.87
1.481
T I D
Lai T0099TS341_1u
56
56
44
35
30
2.65
1.600
T I D
Noguchi T0099AL453_1
56
56
46
35
30
2.82
1.575
T I D
Fugue-Cam T0099AL103_1
56
53
42
34
30
2.61
1.550
T I D
Sternberg-3DPSSM T0099AL132_1
56
56
45
34
30
2.85
1.525
T I D
SDSC1 T0099TS186_1
56
54
44
33
30
2.74
1.549
T I D
GMD-SCAI T0099AL361_1
56
55
45
31
30
2.92
1.490
T I D
Barton T0099AL173_1
56
51
42
31
30
2.83
1.433
T I D
Tsigelny T0099AL274_1
56
55
44
36
29
2.67
1.588
T I D
bioinbgu-seqpprf T0099AL106_1
56
55
44
35
29
2.81
1.512
T I D
ssPsi/Elofsson-Arne T0099AL127_1
56
55
45
34
29
2.78
1.562
T I D
UCLA-DOE T0099AL229_1
56
52
41
34
29
2.70
1.464
T I D
Walts-Wondrous-Wizards T0099AL044_1
56
55
45
32
29
2.75
1.579
T I D
SAM-T2K T0099TS094_1
56
56
46
32
29
2.84
1.565
T I D
bioinbgu-prfseq T0099AL108_1
56
56
46
36
28
2.81
1.581
T I D
Ram-Samudrala T0099TS028_1
56
56
45
35
28
2.84
1.531
T I D
SBI-AT T0099AL342_1
56
56
45
32
27
2.89
1.505
T I D
koehl T0099TS426_1
56
56
45
32
27
2.89
1.505
T I D
MRIT-Onizuka T0099AL052_1
56
56
43
32
27
2.85
1.458
T I D
SBfold T0099TS381_1u
56
56
42
30
27
2.79
1.453
T I D
Flake&mates T0099TS278_1
56
54
45
33
26
2.81
1.546
T I D
Skolnick-Kolinski-THD T0099TS393_1
56
56
42
33
26
2.89
1.405
T I D
SAM-T99 T0099AL111_1
56
50
40
30
26
2.72
1.418
T I D
LAMBERT-Christophe T0099TS218_1
56
56
43
30
26
2.96
1.405
T I D
Elber-Meller-2000 T0099AL280_1
56
53
45
36
25
2.71
1.601
T I D
Lee-Jung T0099TS191_1
56
56
44
34
25
2.82
1.507
T I D
CBC-FOLD T0099TS133_1
56
56
41
31
25
2.66
1.486
T I D
InforMax T0099TS022_1
56
54
42
31
24
2.74
1.479
T I D
CBC-FOLD T0099TS133_1u
56
56
39
30
24
2.59
1.450
T I D
mGenTHREADER T0099AL260_1
56
56
42
33
23
2.58
1.567
T I D
Harrison-Weber T0099TS058_1
56
55
42
31
23
2.91
1.395
T I D
Wolynes T0099TS032_1
56
56
38
25
21
3.06
1.203
T I D
SBauto T0099TS382_1u
56
56
38
32
14
2.73
1.343
T I D
SDSC2:Reddy-Bourne T0099TS187_1u
56
25
21
18
14
2.53
0.798
T I D
zhu T0099TS352_1
56
55
36
24
7
3.22
1.084
T I D
ELAN T0099TS512_1
56
56
27
17
7
3.10
0.844
T I D
Chodera-John T0099TS471_1
56
56
35
25
2
3.05
1.111
T I D
HeadGordon-Teresa T0099TS383_1
56
56
30
20
2
2.86
1.014
T I D
Del-Carpio-Yoshimori T0099TS045_1
56
56
29
14
2
3.14
0.895
T I D
WXW T0099AL273_1
56
47
19
7
1
3.51
0.526
T I D
BinToHes T0099TS255_1
56
56
43
35
0
2.65
1.564
T I D
Jones-Ab T0099TS281_1
56
56
27
7
0
2.96
0.882
T I D
Bystroff T0099TS055_1
56
56
20
7
0
3.30
0.588
T I D
Isites-Server T0099TS216_1
56
56
20
7
0
3.30
0.588
T I D
Raghava-GPS T0099TS018_1u
56
56
16
1
0
3.13
0.495
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition


Adam Zemla, 03/27/2001