Sequence Independent Analysis
LGA results for Target: T0104

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0104 : 87

Models ordered by number of correctly aligned residues (AL0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1do0.E.-) to the target T0104


Submitted models


Details about the closest PDB structure to the target T0104
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1do0.E.-
406
108
2.72
11.11
3.830
T I


Models ordered by number of correctly aligned residues (AL0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
Murzin T0104TS384_1
157
157
113
96
56
2.59
4.201
T I D
Kollman-Baker T0104TS498_1
157
157
107
72
49
3.15
3.292
T I D
Levitt T0104TS012_1
157
119
70
61
46
2.50
2.692
T I D
baker T0104TS354_1
157
157
98
66
40
3.11
3.053
T I D
Tatsuya T0104AL329_1
157
104
67
35
30
2.26
2.839
T I D
Fugue-Cam T0104AL103_1
157
154
67
43
29
2.99
2.168
T I D
Ram-Samudrala T0104TS028_1
157
157
68
36
29
2.58
2.537
T I D
Walts-Wondrous-Wizards T0104AL044_1
157
155
96
40
28
2.86
3.243
T I D
bioinbgu-seqpprf T0104AL106_1
157
135
64
30
27
3.09
2.006
T I D
Fischer-Daniel T0104AL357_1
157
135
64
30
27
3.09
2.006
T I D
rost T0104AL077_1
157
152
61
29
27
2.83
2.082
T I D
ORNL-PROSPECT T0104TS088_1
157
157
77
41
26
2.57
2.884
T I D
FFAS T0104XA395_1.late
157
132
72
35
26
2.99
2.330
T I D
Zhou-HX T0104AL137_1
157
74
44
31
26
1.95
2.146
T I D
BioInfo.PL T0104TS031_1
157
157
89
47
24
3.04
2.834
T I D
Sternberg-3DPSSM T0104AL132_1
157
126
61
30
23
2.65
2.218
T I D
josé T0104AL405_1
157
126
61
30
23
2.65
2.218
T I D
SBI-AT T0104TS342_1
157
123
64
30
23
2.99
2.071
T I D
Braun-UTMB T0104TS223_1
157
157
58
30
23
2.83
1.980
T I D
Honig-Barry T0104TS042_1
157
129
55
28
23
2.63
2.015
T I D
bioinbgu-prfseq T0104AL108_1
157
63
51
35
22
2.46
1.992
T I D
kitasato-univ. T0104TS047_1
157
76
43
28
21
2.84
1.463
T I D
ssPsi/Elofsson-Arne T0104AL127_1u
157
145
57
31
19
2.90
1.900
T I D
SBauto T0104AL382_1
157
92
46
29
19
2.66
1.667
T I D
Harrison-Weber T0104TS058_1
157
157
70
25
15
3.23
2.102
T I D
PDB-ISL T0104AL344_1
157
142
91
22
15
3.08
2.862
T I D
Wolynes T0104TS032_1
157
148
65
18
15
2.99
2.104
T I D
SBfold T0104TS381_1
157
157
52
40
14
2.85
1.763
T I D
GenTHREADER T0104AL259_1
157
124
71
39
13
3.01
2.283
T I D
mGenTHREADER T0104AL260_1
157
124
71
39
13
3.01
2.283
T I D
FFAS T0104AL395_1
157
132
72
15
13
2.99
2.330
T I D
Godzik T0104TS197_1
157
125
67
36
12
3.32
1.959
T I D
Shortle T0104TS001_1
157
156
77
29
12
3.16
2.362
T I D
UCLA-DOE T0104AL229_1
157
133
62
25
11
2.99
2.006
T I D
Bystroff T0104TS055_1
157
157
56
19
11
3.21
1.692
T I D
Yang-Ansuei T0104TS017_1
157
153
82
16
11
3.05
2.603
T I D
Jones T0104TS023_1
157
157
76
36
10
3.13
2.353
T I D
Isites-Server T0104TS216_1
157
157
56
27
10
3.04
1.783
T I D
CBC-FOLD T0104AL133_1
157
119
64
18
9
3.11
1.994
T I D
Sternberg T0104AL126_1
157
125
68
49
7
3.20
2.061
T I D
SAM-T99 T0104AL111_1
157
116
64
29
7
2.91
2.126
T I D
blundell-tl T0104TS095_1
157
157
64
18
7
3.04
2.038
T I D
Ho-Kai-Ming T0104AL375_1
157
153
37
9
7
2.79
1.280
T I D
Chandonia-Cohen T0104AL150_1
157
129
65
24
6
3.03
2.077
T I D
Torda-Andrew T0104TS065_1
157
141
61
24
6
3.60
1.649
T I D
Tsigelny T0104AL274_1
157
101
53
7
6
3.09
1.661
T I D
SBI-GR T0104TS457_1
157
157
56
9
5
2.65
2.036
T I D
GNM-FR T0104TS161_1
157
157
71
34
4
3.44
2.006
T I D
Taylor T0104TS390_1
157
157
76
34
3
3.09
2.382
T I D
DNAmining.com/p-map T0104AL170_1
157
139
60
33
3
2.75
2.105
T I D
ELAN T0104TS512_1
157
157
43
30
3
3.07
1.356
T I D
mprabha T0104TS459_1
157
88
50
27
3
2.73
1.767
T I D
BinToHes T0104TS255_1
157
157
57
15
3
3.32
1.667
T I D
Del-Carpio-Yoshimori T0104TS045_1
157
157
65
8
3
3.12
2.019
T I D
Levy T0104AL331_1
157
121
70
33
2
3.06
2.215
T I D
Friesner T0104TS414_1
157
157
52
21
2
2.92
1.722
T I D
zhu T0104TS352_1
157
154
51
16
2
3.36
1.474
T I D
WXW T0104AL273_1
157
110
58
10
2
3.44
1.638
T I D
SAM-T2K T0104AL094_1
157
151
70
30
1
2.77
2.439
T I D
Lomize-Andrei T0104TS002_1
157
123
61
29
1
3.09
1.912
T I D
GMD-SCAI T0104AL361_1
157
115
63
28
1
3.23
1.892
T I D
BMERC T0104AL248_1
157
120
60
23
1
3.04
1.911
T I D
Cafasp-consensus T0104AL359_1
157
115
66
17
1
3.17
2.018
T I D
valencia-cnb-pred T0104AL220_1
157
145
57
11
1
2.99
1.845
T I D
Reva-Boris T0104AL401_1
157
143
57
11
1
3.07
1.798
T I D
Pan T0104AL010_1
157
155
25
5
1
2.46
0.977
T I D
bioinbgu-seqpmprf T0104AL107_1
157
85
36
4
1
3.01
1.158
T I D
Finkelstein T0104AL204_1
157
134
43
2
1
3.17
1.315
T I D
Skolnick-Kolinski T0104TS080_1
157
157
51
25
0
2.72
1.809
T I D
osgdj T0104TS221_1
157
157
46
15
0
2.98
1.494
T I D
Flake&mates T0104TS278_1
157
104
42
12
0
2.87
1.414
T I D
SHESTOPALOV T0104AL027_1_1
157
61
39
7
0
2.69
1.398
T I D
Harold-Scheraga T0104TS004_1
157
157
30
6
0
3.75
0.779
T I D
TUDELFT T0104TS155_1
157
157
52
5
0
3.42
1.477
T I D
Barton T0104AL173_1
157
131
56
4
0
2.90
1.867
T I D
Valencia-CNB T0104AL162_1
157
141
55
2
0
2.58
2.052
T I D
Lee-Jung T0104TS191_1
157
118
57
2
0
2.90
1.900
T I D
MRIT-Onizuka T0104AL052_1
157
150
55
2
0
3.12
1.708
T I D
Yoon T0104TS152_1
157
157
42
1
0
3.27
1.246
T I D
SHESTOPALOV T0104AL027_1_2
157
72
45
0
0
2.23
1.931
T I D
Elber-Meller-2000 T0104AL280_1
157
123
46
0
0
2.79
1.592
T I D
bioinbgu T0104AL093_1
157
112
41
0
0
2.90
1.367
T I D
bioinbgu-gonp T0104AL104_1
157
112
41
0
0
2.90
1.367
T I D
bioinbgu-gonpm T0104AL105_1
157
112
41
0
0
2.90
1.367
T I D
PDB-Blast T0104AL158_1
157
23
22
0
0
2.21
0.952
T I D
Raghava-GPS T0104TS018_1u
157
157
30
0
0
3.08
0.943
T I D
Knapp T0104TS492_1
157
49
28
0
0
3.18
0.854
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001