Sequence Independent Analysis
LGA results for Target: T0117

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0117 : 77

Models ordered by number of AL4 aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1vtk) to the target T0117


Submitted models


Details about the closest PDB structure to the target T0117
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1vtk
313
181
2.33
17.13
7.448
T I


Models ordered by number of AL4 aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
BioInfo.PL T0117TS031_1
197
197
184
158
149
2.36
7.480
T I D
baker T0117TS354_1
197
197
177
150
128
2.43
6.996
T I D
Fugue-Cam T0117AL103_1
197
186
173
144
114
2.34
7.090
T I D
PDB-Blast T0117AL158_1
197
168
159
137
113
2.33
6.543
T I D
CBC-FOLD T0117AL133_1
197
165
158
137
112
2.35
6.449
T I D
LAMBERT-Christophe T0117TS218_1
197
197
162
135
114
2.45
6.353
T I D
Honig-Barry T0117TS042_1
197
197
165
134
92
2.64
6.022
T I D
bioinbgu-seqpprf T0117AL106_1
197
173
153
132
126
2.24
6.538
T I D
bioinbgu T0117AL093_1
197
177
152
131
125
2.23
6.524
T I D
bioinbgu-seqpmprf T0117AL107_1
197
177
152
131
125
2.23
6.524
T I D
Fischer-Daniel T0117AL357_1
197
177
152
131
125
2.23
6.524
T I D
SBfold T0117TS381_1
197
197
170
131
124
2.33
6.996
T I D
Sali-Andrej T0117TS237_1
197
196
155
130
109
2.35
6.327
T I D
SAM-T99 T0117AL111_1
197
182
155
128
82
2.58
5.784
T I D
bioinbgu-gonp T0117AL104_1
197
169
150
126
110
2.35
6.122
T I D
SBI-AT T0117TS342_1
197
197
153
125
104
2.41
6.096
T I D
kitasato-univ. T0117TS047_1
197
179
161
125
83
2.35
6.571
T I D
Sternberg T0117TS126_1
197
197
160
123
99
2.60
5.926
T I D
Braun-UTMB T0117TS223_1
197
196
150
123
79
2.83
5.119
T I D
DNAmining.com/p-map T0117AL170_1
197
174
145
123
73
2.61
5.351
T I D
CHEN-WENDY T0117TS429_1
197
196
160
123
68
2.44
6.299
T I D
Vajda T0117TS241_1
197
196
150
121
61
2.56
5.639
T I D
Skolnick-Kolinski-THD T0117TS393_1
197
197
147
120
84
2.68
5.288
T I D
SAM-T2K T0117AL094_1
197
183
156
120
76
2.57
5.843
T I D
Yang-Ansuei T0117TS017_1
197
195
161
115
93
2.56
6.053
T I D
SBauto T0117TS382_1
197
197
162
115
80
2.64
5.912
T I D
ORNL-PROSPECT T0117TS088_1
197
197
160
112
85
2.60
5.926
T I D
Dunbrack T0117TS169_1
197
196
148
109
77
2.52
5.649
T I D
GenTHREADER T0117AL259_1
197
144
130
105
100
2.29
5.439
T I D
mGenTHREADER T0117AL260_1
197
144
130
105
100
2.29
5.439
T I D
Walts-Wondrous-Wizards T0117AL044_1
197
186
150
105
69
2.57
5.618
T I D
Ram-Samudrala T0117TS028_1
197
197
142
105
57
2.55
5.358
T I D
Cafasp-consensus T0117AL359_1
197
187
150
104
69
2.59
5.576
T I D
Friesner T0117TS414_1
197
197
156
104
51
3.05
4.952
T I D
FFAS T0117XA395_1.late
197
182
147
101
86
2.53
5.589
T I D
Zhou-HX T0117AL137_1
197
160
133
101
77
2.46
5.195
T I D
rost T0117AL077_1
197
168
135
101
69
2.54
5.114
T I D
123D+ T0117AL389_1
197
188
147
101
67
2.58
5.485
T I D
Harrison-Weber T0117TS058_1
197
197
129
101
50
2.93
4.257
T I D
Godzik T0117TS197_1
197
196
151
100
67
2.70
5.393
T I D
Chandonia-Cohen T0117AL150_1
197
168
138
100
55
2.82
4.726
T I D
bioinbgu-prfseq T0117AL108_1
197
172
134
99
65
2.73
4.735
T I D
MOE-CCG T0117TS444_1
197
175
138
98
69
2.51
5.287
T I D
blundell-tl T0117TS095_1u
197
197
154
97
67
2.63
5.641
T I D
bioinbgu-gonpm T0117AL105_1
197
185
149
97
48
2.46
5.820
T I D
Lee-Jung T0117TS191_1
197
185
150
97
45
2.52
5.725
T I D
UCLA-DOE T0117AL229_1
197
167
140
88
63
2.53
5.323
T I D
Fox-Sheppard T0117AL536_1
197
192
152
87
47
2.54
5.758
T I D
Sternberg-3DPSSM T0117AL132_1
197
174
112
86
51
2.71
3.986
T I D
Wolynes T0117TS032_1
197
197
147
85
53
2.57
5.506
T I D
Tsigelny T0117AL274_1
197
162
121
84
55
2.80
4.172
T I D
Barton T0117AL173_1
197
176
140
83
45
2.51
5.364
T I D
GMD-SCAI T0117AL361_1
197
168
141
82
55
2.76
4.930
T I D
Moult T0117TS363_1
197
154
121
81
40
2.49
4.672
T I D
Jones T0117TS023_1
197
197
149
78
63
2.80
5.138
T I D
FAMS T0117TS500_1
197
194
116
76
40
2.98
3.766
T I D
Levy T0117AL331_1
197
192
112
71
39
2.74
3.944
T I D
Bass-Michael T0117TS086_1
197
161
134
70
53
2.86
4.527
T I D
SBI-GR T0117TS457_1
197
197
137
67
40
2.65
4.982
T I D
Levitt T0117TS012_1
197
195
145
51
29
2.72
5.142
T I D
FFAS T0117AL395_1
197
196
149
50
38
2.55
5.623
T I D
Taylor T0117TS390_1
197
196
149
43
33
2.49
5.753
T I D
Sternberg-3D-JIGSAW T0117TS125_1
197
107
87
33
22
2.79
3.010
T I D
BinToHes T0117TS255_1
197
197
126
33
9
2.30
5.250
T I D
valencia-cnb-pred T0117AL220_1
197
103
63
19
14
2.91
2.093
T I D
ELAN T0117TS512_1
197
197
61
18
1
3.32
1.784
T I D
MRIT-Onizuka T0117AL052_1
197
185
62
17
9
2.74
2.183
T I D
GNM-FR T0117TS161_1
197
197
71
17
6
3.05
2.254
T I D
Reva-Boris T0117AL401_1
197
181
69
15
3
3.57
1.880
T I D
Flake&mates T0117TS278_1
197
161
64
15
1
3.04
2.038
T I D
Del-Carpio-Yoshimori T0117TS045_1
197
197
59
11
2
2.87
1.987
T I D
Elber-Meller-2000 T0117AL280_1
197
197
84
5
0
2.82
2.877
T I D
WXW T0117AL273_1
197
158
55
2
0
2.82
1.884
T I D
Bystroff T0117TS055_1
197
197
55
1
0
2.91
1.827
T I D
ssPsi/Elofsson-Arne T0117AL127_1u
197
195
50
1
0
3.63
1.340
T I D
SDSC1 T0117TS186_1
197
88
71
0
0
2.14
3.170
T I D
Raghava-GPS T0117TS018_1u
197
197
37
0
0
3.33
1.079
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition

Adam Zemla, 03/27/2001