Sequence Independent Analysis
LGA results for Target: T0120
Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms
Total number of 3D " MODELS 1 " submitted for target T0120 : 74
Models ordered by number of AL4 aligned residues (DIST=5.0)
AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE
Alignment details
Closest PDB structure (1qu7.A.-) to the target T0120
Submitted models
Details about the closest PDB structure to the target T0120
| PDB structure |
N_AA |
N(dist=5.0) |
RMSD(N) |
Seq_Id |
LGA_Q |
PLOTS |
| 1qu7.A.- |
227 |
96 |
2.45 |
5.21 |
3.764 |
T I |
Models ordered by number of AL4 aligned residues (DIST=5.0)
| GROUP Name |
MODEL Number |
NT |
NP |
N(dist=5.0) |
AL4 |
AL0 |
RMSD(N) |
LGA_Q |
PLOTS |
| MRIT-Onizuka |
T0120AL052_1 |
203 |
201 |
96 |
74 |
0 |
2.29 |
4.017 |
T I D |
| FFAS |
T0120XA395_1.late |
203 |
152 |
94 |
59 |
0 |
2.36 |
3.821 |
T I D |
| Tatsuya |
T0120AL329_1 |
203 |
74 |
56 |
49 |
12 |
1.90 |
2.800 |
T I D |
| SAM-T99 |
T0120AL111_1 |
203 |
68 |
40 |
38 |
0 |
1.63 |
2.312 |
T I D |
| baker |
T0120TS354_1 |
203 |
203 |
66 |
30 |
8 |
3.02 |
2.115 |
T I D |
| Isites-Server |
T0120TS216_1 |
203 |
203 |
49 |
25 |
11 |
2.43 |
1.937 |
T I D |
| GNM-FR |
T0120TS161_1 |
203 |
203 |
41 |
22 |
3 |
3.02 |
1.314 |
T I D |
| Friesner |
T0120TS414_1 |
203 |
203 |
53 |
20 |
2 |
3.20 |
1.606 |
T I D |
| Torda-Andrew |
T0120TS065_1 |
203 |
194 |
52 |
19 |
16 |
2.97 |
1.694 |
T I D |
| SAM-T2K |
T0120AL094_1 |
203 |
189 |
65 |
18 |
3 |
3.07 |
2.050 |
T I D |
| bioinbgu-gonpm |
T0120AL105_1 |
203 |
186 |
42 |
17 |
0 |
2.21 |
1.818 |
T I D |
| Walts-Wondrous-Wizards |
T0120AL044_1_1 |
203 |
107 |
32 |
14 |
2 |
2.83 |
1.092 |
T I D |
| bioinbgu |
T0120AL093_1 |
203 |
195 |
38 |
11 |
0 |
3.29 |
1.121 |
T I D |
| bioinbgu-gonp |
T0120AL104_1 |
203 |
195 |
38 |
11 |
0 |
3.29 |
1.121 |
T I D |
| Skolnick-Kolinski |
T0120TS080_1 |
203 |
203 |
47 |
10 |
1 |
2.91 |
1.561 |
T I D |
| kitasato-univ. |
T0120TS047_1 |
203 |
198 |
58 |
8 |
1 |
2.70 |
2.071 |
T I D |
| Sausage |
T0120TS179_1 |
203 |
191 |
40 |
6 |
0 |
3.29 |
1.180 |
T I D |
| ELAN |
T0120TS512_1 |
203 |
203 |
40 |
5 |
3 |
3.26 |
1.190 |
T I D |
| BinToHes |
T0120TS255_1 |
203 |
203 |
50 |
5 |
0 |
3.03 |
1.597 |
T I D |
| bioinbgu-seqpprf |
T0120AL106_1 |
203 |
179 |
49 |
5 |
0 |
3.09 |
1.536 |
T I D |
| bioinbgu-seqpmprf |
T0120AL107_1 |
203 |
179 |
49 |
5 |
0 |
3.09 |
1.536 |
T I D |
| Shortle |
T0120TS001_1_1 |
203 |
107 |
38 |
5 |
0 |
2.80 |
1.310 |
T I D |
| Yang-Ansuei |
T0120TS017_1 |
203 |
192 |
61 |
4 |
2 |
2.12 |
2.748 |
T I D |
| Finkelstein |
T0120AL204_1 |
203 |
152 |
41 |
3 |
1 |
2.84 |
1.395 |
T I D |
| valencia-cnb-pred |
T0120AL220_1 |
203 |
149 |
22 |
3 |
1 |
3.29 |
0.649 |
T I D |
| FAMS |
T0120TS500_1 |
203 |
201 |
75 |
3 |
0 |
2.30 |
3.125 |
T I D |
| SHESTOPALOV |
T0120AL027_1 |
203 |
185 |
53 |
3 |
0 |
2.78 |
1.840 |
T I D |
| WXW |
T0120AL273_1 |
203 |
99 |
36 |
2 |
1 |
3.58 |
0.978 |
T I D |
| Lee-Jung |
T0120TS191_1 |
203 |
166 |
28 |
2 |
1 |
3.46 |
0.787 |
T I D |
| Ram-Samudrala |
T0120TS028_1 |
203 |
203 |
60 |
2 |
0 |
2.63 |
2.198 |
T I D |
| Elber-Meller-2000 |
T0120AL280_1 |
203 |
199 |
42 |
2 |
0 |
3.05 |
1.333 |
T I D |
| GMD-SCAI |
T0120AL361_1 |
203 |
154 |
36 |
2 |
0 |
2.65 |
1.309 |
T I D |
| Levy |
T0120AL331_1_1 |
203 |
91 |
56 |
1 |
0 |
1.59 |
3.314 |
T I D |
| SDSC1 |
T0120TS186_1 |
203 |
198 |
65 |
1 |
0 |
1.90 |
3.250 |
T I D |
| Reva-Boris |
T0120AL401_1 |
203 |
135 |
63 |
1 |
0 |
2.30 |
2.625 |
T I D |
| BioInfo.PL |
T0120TS031_1_1 |
203 |
133 |
53 |
1 |
0 |
2.92 |
1.755 |
T I D |
| Flake&mates |
T0120TS278_1 |
203 |
168 |
47 |
1 |
0 |
2.85 |
1.593 |
T I D |
| SDSC2:Reddy-Bourne |
T0120TS187_1u |
203 |
187 |
42 |
1 |
0 |
2.68 |
1.511 |
T I D |
| ssPsi/Elofsson-Arne |
T0120AL127_1u |
203 |
189 |
40 |
1 |
0 |
2.93 |
1.320 |
T I D |
| Valencia-CNB |
T0120AL162_1 |
203 |
196 |
38 |
1 |
0 |
2.96 |
1.242 |
T I D |
| Fugue-Cam |
T0120AL103_1 |
203 |
148 |
40 |
1 |
0 |
3.23 |
1.201 |
T I D |
| PDB-Blast |
T0120AL158_1 |
203 |
87 |
36 |
1 |
0 |
3.29 |
1.062 |
T I D |
| Sternberg-3DPSSM |
T0120AL132_1 |
203 |
132 |
83 |
0 |
0 |
1.75 |
4.486 |
T I D |
| FFAS |
T0120AL395_1 |
203 |
155 |
94 |
0 |
0 |
2.36 |
3.821 |
T I D |
| Walts-Wondrous-Wizards |
T0120AL044_1_2 |
203 |
61 |
49 |
0 |
0 |
1.28 |
3.551 |
T I D |
| Bass-Michael |
T0120TS086_1 |
203 |
150 |
70 |
0 |
0 |
1.92 |
3.465 |
T I D |
| Levy |
T0120AL331_1_2 |
203 |
111 |
88 |
0 |
0 |
2.52 |
3.359 |
T I D |
| 123D+ |
T0120AL389_1 |
203 |
60 |
50 |
0 |
0 |
1.57 |
2.994 |
T I D |
| Tsigelny |
T0120AL274_1_1 |
203 |
51 |
51 |
0 |
0 |
1.71 |
2.818 |
T I D |
| Fox-Sheppard |
T0120AL536_1 |
203 |
73 |
52 |
0 |
0 |
1.87 |
2.640 |
T I D |
| ORNL-PROSPECT |
T0120TS088_1 |
203 |
153 |
66 |
0 |
0 |
2.49 |
2.548 |
T I D |
| Harrison-Weber |
T0120TS058_1 |
203 |
203 |
60 |
0 |
0 |
2.79 |
2.076 |
T I D |
| GenTHREADER |
T0120AL259_1 |
203 |
94 |
49 |
0 |
0 |
2.35 |
2.000 |
T I D |
| mGenTHREADER |
T0120AL260_1 |
203 |
94 |
49 |
0 |
0 |
2.35 |
2.000 |
T I D |
| bioinbgu-prfseq |
T0120AL108_1 |
203 |
102 |
42 |
0 |
0 |
2.02 |
1.981 |
T I D |
| Fischer-Daniel |
T0120AL357_1 |
203 |
102 |
42 |
0 |
0 |
2.02 |
1.981 |
T I D |
| Godzik |
T0120TS197_1 |
203 |
46 |
40 |
0 |
0 |
1.99 |
1.914 |
T I D |
| BioInfo.PL |
T0120TS031_1_2 |
203 |
70 |
37 |
0 |
0 |
1.91 |
1.841 |
T I D |
| mprabha |
T0120TS459_1 |
203 |
122 |
42 |
0 |
0 |
2.36 |
1.707 |
T I D |
| Cafasp-consensus |
T0120TS359_1 |
203 |
92 |
46 |
0 |
0 |
2.62 |
1.691 |
T I D |
| Shortle |
T0120TS001_1_2 |
203 |
85 |
38 |
0 |
0 |
2.24 |
1.624 |
T I D |
| Holm |
T0120AL073_1 |
203 |
81 |
44 |
0 |
0 |
2.66 |
1.594 |
T I D |
| PDB-ISL |
T0120AL344_1 |
203 |
81 |
44 |
0 |
0 |
2.66 |
1.594 |
T I D |
| Jones |
T0120TS023_1 |
203 |
164 |
40 |
0 |
0 |
2.63 |
1.465 |
T I D |
| Raghava-GPS |
T0120TS018_1u |
203 |
203 |
46 |
0 |
0 |
3.27 |
1.365 |
T I D |
| Chandonia-Cohen |
T0120AL150_1 |
203 |
178 |
42 |
0 |
0 |
2.98 |
1.364 |
T I D |
| Taylor |
T0120TS390_1 |
203 |
203 |
46 |
0 |
0 |
3.40 |
1.314 |
T I D |
| CBC-FOLD |
T0120AL133_1 |
203 |
135 |
38 |
0 |
0 |
2.89 |
1.271 |
T I D |
| Del-Carpio-Yoshimori |
T0120TS045_1 |
203 |
203 |
41 |
0 |
0 |
3.30 |
1.206 |
T I D |
| DNAmining.com/p-map |
T0120AL170_1 |
203 |
46 |
30 |
0 |
0 |
2.68 |
1.079 |
T I D |
| NIH-Munson |
T0120TS374_1u |
203 |
48 |
28 |
0 |
0 |
2.76 |
0.979 |
T I D |
| Tsigelny |
T0120AL274_1_2 |
203 |
18 |
18 |
0 |
0 |
1.75 |
0.973 |
T I D |
| Shortle |
T0120TS001_1_3 |
203 |
0 |
0 |
0 |
0 |
0 |
0 |
T I D |
| BioInfo.PL |
T0120TS031_1_3 |
203 |
0 |
0 |
0 |
0 |
0 |
0 |
T I D |
NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition
Adam Zemla, 03/27/2001