Sequence Independent Analysis
LGA results for Target: T0128_1

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0128_1 : 92

Models ordered by number of correctly aligned residues (AL0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1b06_F) to the target T0128_1


Submitted models


Details about the closest PDB structure to the target T0128_1
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1b06_F
208
88
0.70
53.41
10.966
T I


Models ordered by number of correctly aligned residues (AL0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
CHEN-WENDY T0128TS429_1
88
88
88
88
88
0.66
11.579
T I D
Levitt T0128TS012_1
88
88
88
88
88
0.68
11.282
T I D
rost T0128TS077_1
88
87
87
87
87
0.60
12.429
T I D
TUDELFT T0128TS155_1u
88
87
87
87
87
0.60
12.429
T I D
TUDELFT T0128TS155_1
88
87
87
87
87
0.62
12.083
T I D
YASARA T0128TS465_1
88
87
87
87
87
0.62
12.083
T I D
Vajda T0128TS241_1
88
88
88
87
87
0.80
9.778
T I D
Sternberg T0128TS126_1
88
87
87
87
87
0.79
9.775
T I D
Lee-Jung T0128TS191_1
88
88
88
87
87
0.89
8.889
T I D
GNM-FR T0128TS161_1
88
88
88
87
87
1.12
7.213
T I D
SBI-GR T0128TS457_1
88
88
88
87
86
1.03
7.788
T I D
Taylor T0128TS390_1
88
88
88
87
86
1.16
6.984
T I D
CBC-FOLD T0128AL133_1
88
87
87
86
86
0.75
10.235
T I D
SDSC1 T0128TS186_1
88
87
87
86
86
0.80
9.667
T I D
SBI-jz T0128TS468_1
88
87
87
86
86
0.83
9.355
T I D
bioinbgu-gonp T0128AL104_1
88
88
87
86
86
0.85
9.158
T I D
Cafasp-consensus T0128AL359_1
88
88
87
86
86
0.85
9.158
T I D
Jones T0128TS023_1
88
88
87
86
86
1.00
7.909
T I D
GenTHREADER T0128AL259_1
88
88
86
86
85
0.73
10.361
T I D
mGenTHREADER T0128AL260_1
88
88
86
86
85
0.73
10.361
T I D
Fox-Sheppard T0128AL536_1
88
88
86
86
85
0.73
10.361
T I D
Honig-Barry T0128TS042_1
88
87
87
86
85
0.79
9.775
T I D
Ginalski T0128TS526_1
88
88
87
86
85
1.01
7.838
T I D
MSI T0128TS447_1
88
87
87
86
85
1.09
7.311
T I D
BioInfo.PL T0128TS031_1
88
88
88
86
85
1.21
6.718
T I D
shankari T0128TS535_1
88
88
88
86
85
1.25
6.519
T I D
Barton T0128AL173_1
88
85
85
85
85
0.51
13.934
T I D
baker T0128TS354_1
88
88
87
85
85
1.11
7.190
T I D
VENCLOVAS T0128TS406_1
88
88
87
85
84
0.98
8.056
T I D
MOE-CCG T0128TS444_1
88
87
86
85
84
1.09
7.227
T I D
Zemla-Joanna T0128TS330_1
88
88
86
85
83
0.86
8.958
T I D
Shoshana-Wodak T0128TS486_1
88
88
86
85
83
0.93
8.350
T I D
Yang-Ansuei T0128TS017_1
88
86
86
84
83
1.29
6.187
T I D
Moult T0128TS363_1
88
83
83
83
83
0.54
12.969
T I D
Zhou-HX T0128AL137_1
88
84
84
83
83
0.80
9.333
T I D
Yoon T0128TS152_1
88
88
84
83
82
1.18
6.562
T I D
Sali-Andrej T0128TS237_1
88
82
82
82
82
0.62
11.389
T I D
Ram-Samudrala T0128TS028_1
88
88
85
83
80
1.07
7.265
T I D
SBI-AT T0128TS342_1
88
84
82
82
80
0.94
7.885
T I D
FFAS T0128AL395_1
88
84
83
82
80
1.20
6.385
T I D
FFAS T0128XA395_1.late
88
84
83
82
80
1.20
6.385
T I D
Ho-Kai-Ming T0128AL375_1
88
84
82
81
80
1.07
7.009
T I D
Godzik T0128TS197_1
88
84
82
81
80
1.08
6.949
T I D
GMD-SCAI T0128AL361_1
88
84
83
81
79
1.19
6.434
T I D
Wolynes T0128TS032_1
88
84
81
80
78
0.83
8.710
T I D
Walts-Wondrous-Wizards T0128AL044_1
88
84
81
80
78
0.84
8.617
T I D
MRIT-Onizuka T0128AL052_1
88
84
81
80
78
0.84
8.617
T I D
bioinbgu T0128AL093_1
88
84
81
80
78
0.84
8.617
T I D
bioinbgu-seqpprf T0128AL106_1
88
84
81
80
78
0.84
8.617
T I D
bioinbgu-seqpmprf T0128AL107_1
88
84
81
80
78
0.84
8.617
T I D
Fischer-Daniel T0128AL357_1
88
84
81
80
78
0.84
8.617
T I D
Noguchi T0128AL453_1
88
84
81
80
78
0.84
8.617
T I D
Bass-Michael T0128TS086_1
88
84
81
80
78
0.84
8.617
T I D
Torda-Andrew T0128TS065_1
88
84
81
80
77
0.85
8.526
T I D
Flake&mates T0128TS278_1
88
82
80
79
77
0.84
8.511
T I D
kitasato-univ. T0128TS047_1
88
83
81
79
77
1.54
4.939
T I D
Braun-UTMB T0128TS223_1
88
83
80
77
77
1.40
5.333
T I D
Fugue-Cam T0128AL103_1
88
85
84
83
76
0.80
9.333
T I D
ORNL-PROSPECT T0128TS088_1
88
88
82
80
76
1.22
6.212
T I D
Sausage T0128TS179_1
88
82
81
79
76
1.10
6.750
T I D
PDB-Blast T0128AL158_1
88
83
80
78
76
1.27
5.839
T I D
LAMBERT-Christophe T0128TS218_1
88
83
80
78
76
1.36
5.479
T I D
Levy T0128AL331_1
88
83
81
78
76
1.48
5.127
T I D
SAM-T99 T0128AL111_1
88
83
80
77
76
1.24
5.970
T I D
Sternberg-3DPSSM T0128AL132_1
88
83
80
77
76
1.24
5.970
T I D
SBfold T0128TS381_1
88
88
80
77
76
1.28
5.797
T I D
Dunbrack T0128TS169_1
88
83
80
77
76
1.29
5.755
T I D
Friesner T0128TS414_1
88
88
82
77
76
1.57
4.910
T I D
blundell-tl T0128TS095_1
88
83
80
79
75
1.18
6.250
T I D
BinToHes T0128TS255_1
88
88
79
78
75
1.31
5.603
T I D
Sternberg-3D-JIGSAW T0128TS125_1
88
83
81
78
74
1.24
6.045
T I D
Tsigelny T0128AL274_1
88
80
79
77
74
1.18
6.172
T I D
bioinbgu-gonpm T0128AL105_1
88
81
78
75
74
1.25
5.778
T I D
bioinbgu-prfseq T0128AL108_1
88
81
78
75
74
1.25
5.778
T I D
SAM-T2K T0128TS094_1
88
88
79
75
73
1.40
5.267
T I D
Pan T0128AL010_1
88
80
79
78
71
1.12
6.475
T I D
SBauto T0128TS382_1
88
88
71
66
66
1.29
5.108
T I D
Skolnick-Kolinski-THD T0128TS393_1
88
88
80
68
62
2.39
3.213
T I D
InforMax T0128TS022_1
88
64
63
61
60
1.28
4.565
T I D
Harrison-Weber T0128TS058_1
88
88
77
66
58
2.49
2.973
T I D
SDSC2:Reddy-Bourne T0128TS187_1u
88
35
34
32
29
2.30
1.417
T I D
Dill-Ken T0128TS243_1
88
88
32
19
4
2.91
1.063
T I D
ELAN T0128TS512_1
88
88
32
19
4
2.91
1.063
T I D
Del-Carpio-Yoshimori T0128TS045_1
88
88
40
11
2
2.65
1.455
T I D
Elber-Meller-2000 T0128AL280_1
88
78
65
63
0
1.63
3.757
T I D
Raghava-GPS T0128TS018_1u
88
88
34
15
0
2.53
1.293
T I D
Isites-Server T0128TS216_1
88
88
40
3
0
2.43
1.581
T I D
WXW T0128AL273_1
88
77
34
1
0
2.94
1.118
T I D
Bystroff T0128TS055_1
88
70
39
0
0
3.20
1.182
T I D
ssPsi/Elofsson-Arne T0128AL127_1u
88
0
0
0
0
0
0
T I D
Chandonia-Cohen T0128AL150_1
88
0
0
0
0
0
0
T I D
123D+ T0128AL389_1
88
0
0
0
0
0
0
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition


Adam Zemla, 03/27/2001