Sequence Independent Analysis
LGA results for Target: T0128_1
Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms
Total number of 3D " MODELS 1 " submitted for target T0128_1 : 92
Models ordered by number of correctly aligned residues (AL0)
AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE
Alignment details
Closest PDB structure (1b06_F) to the target T0128_1
Submitted models
Details about the closest PDB structure to the target T0128_1
| PDB structure |
N_AA |
N(dist=5.0) |
RMSD(N) |
Seq_Id |
LGA_Q |
PLOTS |
| 1b06_F |
208 |
88 |
0.70 |
53.41 |
10.966 |
T I |
Models ordered by number of correctly aligned residues (AL0)
| GROUP Name |
MODEL Number |
NT |
NP |
N(dist=5.0) |
AL4 |
AL0 |
RMSD(N) |
LGA_Q |
PLOTS |
| CHEN-WENDY |
T0128TS429_1 |
88 |
88 |
88 |
88 |
88 |
0.66 |
11.579 |
T I D |
| Levitt |
T0128TS012_1 |
88 |
88 |
88 |
88 |
88 |
0.68 |
11.282 |
T I D |
| rost |
T0128TS077_1 |
88 |
87 |
87 |
87 |
87 |
0.60 |
12.429 |
T I D |
| TUDELFT |
T0128TS155_1u |
88 |
87 |
87 |
87 |
87 |
0.60 |
12.429 |
T I D |
| TUDELFT |
T0128TS155_1 |
88 |
87 |
87 |
87 |
87 |
0.62 |
12.083 |
T I D |
| YASARA |
T0128TS465_1 |
88 |
87 |
87 |
87 |
87 |
0.62 |
12.083 |
T I D |
| Vajda |
T0128TS241_1 |
88 |
88 |
88 |
87 |
87 |
0.80 |
9.778 |
T I D |
| Sternberg |
T0128TS126_1 |
88 |
87 |
87 |
87 |
87 |
0.79 |
9.775 |
T I D |
| Lee-Jung |
T0128TS191_1 |
88 |
88 |
88 |
87 |
87 |
0.89 |
8.889 |
T I D |
| GNM-FR |
T0128TS161_1 |
88 |
88 |
88 |
87 |
87 |
1.12 |
7.213 |
T I D |
| SBI-GR |
T0128TS457_1 |
88 |
88 |
88 |
87 |
86 |
1.03 |
7.788 |
T I D |
| Taylor |
T0128TS390_1 |
88 |
88 |
88 |
87 |
86 |
1.16 |
6.984 |
T I D |
| CBC-FOLD |
T0128AL133_1 |
88 |
87 |
87 |
86 |
86 |
0.75 |
10.235 |
T I D |
| SDSC1 |
T0128TS186_1 |
88 |
87 |
87 |
86 |
86 |
0.80 |
9.667 |
T I D |
| SBI-jz |
T0128TS468_1 |
88 |
87 |
87 |
86 |
86 |
0.83 |
9.355 |
T I D |
| bioinbgu-gonp |
T0128AL104_1 |
88 |
88 |
87 |
86 |
86 |
0.85 |
9.158 |
T I D |
| Cafasp-consensus |
T0128AL359_1 |
88 |
88 |
87 |
86 |
86 |
0.85 |
9.158 |
T I D |
| Jones |
T0128TS023_1 |
88 |
88 |
87 |
86 |
86 |
1.00 |
7.909 |
T I D |
| GenTHREADER |
T0128AL259_1 |
88 |
88 |
86 |
86 |
85 |
0.73 |
10.361 |
T I D |
| mGenTHREADER |
T0128AL260_1 |
88 |
88 |
86 |
86 |
85 |
0.73 |
10.361 |
T I D |
| Fox-Sheppard |
T0128AL536_1 |
88 |
88 |
86 |
86 |
85 |
0.73 |
10.361 |
T I D |
| Honig-Barry |
T0128TS042_1 |
88 |
87 |
87 |
86 |
85 |
0.79 |
9.775 |
T I D |
| Ginalski |
T0128TS526_1 |
88 |
88 |
87 |
86 |
85 |
1.01 |
7.838 |
T I D |
| MSI |
T0128TS447_1 |
88 |
87 |
87 |
86 |
85 |
1.09 |
7.311 |
T I D |
| BioInfo.PL |
T0128TS031_1 |
88 |
88 |
88 |
86 |
85 |
1.21 |
6.718 |
T I D |
| shankari |
T0128TS535_1 |
88 |
88 |
88 |
86 |
85 |
1.25 |
6.519 |
T I D |
| Barton |
T0128AL173_1 |
88 |
85 |
85 |
85 |
85 |
0.51 |
13.934 |
T I D |
| baker |
T0128TS354_1 |
88 |
88 |
87 |
85 |
85 |
1.11 |
7.190 |
T I D |
| VENCLOVAS |
T0128TS406_1 |
88 |
88 |
87 |
85 |
84 |
0.98 |
8.056 |
T I D |
| MOE-CCG |
T0128TS444_1 |
88 |
87 |
86 |
85 |
84 |
1.09 |
7.227 |
T I D |
| Zemla-Joanna |
T0128TS330_1 |
88 |
88 |
86 |
85 |
83 |
0.86 |
8.958 |
T I D |
| Shoshana-Wodak |
T0128TS486_1 |
88 |
88 |
86 |
85 |
83 |
0.93 |
8.350 |
T I D |
| Yang-Ansuei |
T0128TS017_1 |
88 |
86 |
86 |
84 |
83 |
1.29 |
6.187 |
T I D |
| Moult |
T0128TS363_1 |
88 |
83 |
83 |
83 |
83 |
0.54 |
12.969 |
T I D |
| Zhou-HX |
T0128AL137_1 |
88 |
84 |
84 |
83 |
83 |
0.80 |
9.333 |
T I D |
| Yoon |
T0128TS152_1 |
88 |
88 |
84 |
83 |
82 |
1.18 |
6.562 |
T I D |
| Sali-Andrej |
T0128TS237_1 |
88 |
82 |
82 |
82 |
82 |
0.62 |
11.389 |
T I D |
| Ram-Samudrala |
T0128TS028_1 |
88 |
88 |
85 |
83 |
80 |
1.07 |
7.265 |
T I D |
| SBI-AT |
T0128TS342_1 |
88 |
84 |
82 |
82 |
80 |
0.94 |
7.885 |
T I D |
| FFAS |
T0128AL395_1 |
88 |
84 |
83 |
82 |
80 |
1.20 |
6.385 |
T I D |
| FFAS |
T0128XA395_1.late |
88 |
84 |
83 |
82 |
80 |
1.20 |
6.385 |
T I D |
| Ho-Kai-Ming |
T0128AL375_1 |
88 |
84 |
82 |
81 |
80 |
1.07 |
7.009 |
T I D |
| Godzik |
T0128TS197_1 |
88 |
84 |
82 |
81 |
80 |
1.08 |
6.949 |
T I D |
| GMD-SCAI |
T0128AL361_1 |
88 |
84 |
83 |
81 |
79 |
1.19 |
6.434 |
T I D |
| Wolynes |
T0128TS032_1 |
88 |
84 |
81 |
80 |
78 |
0.83 |
8.710 |
T I D |
| Walts-Wondrous-Wizards |
T0128AL044_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| MRIT-Onizuka |
T0128AL052_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| bioinbgu |
T0128AL093_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| bioinbgu-seqpprf |
T0128AL106_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| bioinbgu-seqpmprf |
T0128AL107_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| Fischer-Daniel |
T0128AL357_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| Noguchi |
T0128AL453_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| Bass-Michael |
T0128TS086_1 |
88 |
84 |
81 |
80 |
78 |
0.84 |
8.617 |
T I D |
| Torda-Andrew |
T0128TS065_1 |
88 |
84 |
81 |
80 |
77 |
0.85 |
8.526 |
T I D |
| Flake&mates |
T0128TS278_1 |
88 |
82 |
80 |
79 |
77 |
0.84 |
8.511 |
T I D |
| kitasato-univ. |
T0128TS047_1 |
88 |
83 |
81 |
79 |
77 |
1.54 |
4.939 |
T I D |
| Braun-UTMB |
T0128TS223_1 |
88 |
83 |
80 |
77 |
77 |
1.40 |
5.333 |
T I D |
| Fugue-Cam |
T0128AL103_1 |
88 |
85 |
84 |
83 |
76 |
0.80 |
9.333 |
T I D |
| ORNL-PROSPECT |
T0128TS088_1 |
88 |
88 |
82 |
80 |
76 |
1.22 |
6.212 |
T I D |
| Sausage |
T0128TS179_1 |
88 |
82 |
81 |
79 |
76 |
1.10 |
6.750 |
T I D |
| PDB-Blast |
T0128AL158_1 |
88 |
83 |
80 |
78 |
76 |
1.27 |
5.839 |
T I D |
| LAMBERT-Christophe |
T0128TS218_1 |
88 |
83 |
80 |
78 |
76 |
1.36 |
5.479 |
T I D |
| Levy |
T0128AL331_1 |
88 |
83 |
81 |
78 |
76 |
1.48 |
5.127 |
T I D |
| SAM-T99 |
T0128AL111_1 |
88 |
83 |
80 |
77 |
76 |
1.24 |
5.970 |
T I D |
| Sternberg-3DPSSM |
T0128AL132_1 |
88 |
83 |
80 |
77 |
76 |
1.24 |
5.970 |
T I D |
| SBfold |
T0128TS381_1 |
88 |
88 |
80 |
77 |
76 |
1.28 |
5.797 |
T I D |
| Dunbrack |
T0128TS169_1 |
88 |
83 |
80 |
77 |
76 |
1.29 |
5.755 |
T I D |
| Friesner |
T0128TS414_1 |
88 |
88 |
82 |
77 |
76 |
1.57 |
4.910 |
T I D |
| blundell-tl |
T0128TS095_1 |
88 |
83 |
80 |
79 |
75 |
1.18 |
6.250 |
T I D |
| BinToHes |
T0128TS255_1 |
88 |
88 |
79 |
78 |
75 |
1.31 |
5.603 |
T I D |
| Sternberg-3D-JIGSAW |
T0128TS125_1 |
88 |
83 |
81 |
78 |
74 |
1.24 |
6.045 |
T I D |
| Tsigelny |
T0128AL274_1 |
88 |
80 |
79 |
77 |
74 |
1.18 |
6.172 |
T I D |
| bioinbgu-gonpm |
T0128AL105_1 |
88 |
81 |
78 |
75 |
74 |
1.25 |
5.778 |
T I D |
| bioinbgu-prfseq |
T0128AL108_1 |
88 |
81 |
78 |
75 |
74 |
1.25 |
5.778 |
T I D |
| SAM-T2K |
T0128TS094_1 |
88 |
88 |
79 |
75 |
73 |
1.40 |
5.267 |
T I D |
| Pan |
T0128AL010_1 |
88 |
80 |
79 |
78 |
71 |
1.12 |
6.475 |
T I D |
| SBauto |
T0128TS382_1 |
88 |
88 |
71 |
66 |
66 |
1.29 |
5.108 |
T I D |
| Skolnick-Kolinski-THD |
T0128TS393_1 |
88 |
88 |
80 |
68 |
62 |
2.39 |
3.213 |
T I D |
| InforMax |
T0128TS022_1 |
88 |
64 |
63 |
61 |
60 |
1.28 |
4.565 |
T I D |
| Harrison-Weber |
T0128TS058_1 |
88 |
88 |
77 |
66 |
58 |
2.49 |
2.973 |
T I D |
| SDSC2:Reddy-Bourne |
T0128TS187_1u |
88 |
35 |
34 |
32 |
29 |
2.30 |
1.417 |
T I D |
| Dill-Ken |
T0128TS243_1 |
88 |
88 |
32 |
19 |
4 |
2.91 |
1.063 |
T I D |
| ELAN |
T0128TS512_1 |
88 |
88 |
32 |
19 |
4 |
2.91 |
1.063 |
T I D |
| Del-Carpio-Yoshimori |
T0128TS045_1 |
88 |
88 |
40 |
11 |
2 |
2.65 |
1.455 |
T I D |
| Elber-Meller-2000 |
T0128AL280_1 |
88 |
78 |
65 |
63 |
0 |
1.63 |
3.757 |
T I D |
| Raghava-GPS |
T0128TS018_1u |
88 |
88 |
34 |
15 |
0 |
2.53 |
1.293 |
T I D |
| Isites-Server |
T0128TS216_1 |
88 |
88 |
40 |
3 |
0 |
2.43 |
1.581 |
T I D |
| WXW |
T0128AL273_1 |
88 |
77 |
34 |
1 |
0 |
2.94 |
1.118 |
T I D |
| Bystroff |
T0128TS055_1 |
88 |
70 |
39 |
0 |
0 |
3.20 |
1.182 |
T I D |
| ssPsi/Elofsson-Arne |
T0128AL127_1u |
88 |
0 |
0 |
0 |
0 |
0 |
0 |
T I D |
| Chandonia-Cohen |
T0128AL150_1 |
88 |
0 |
0 |
0 |
0 |
0 |
0 |
T I D |
| 123D+ |
T0128AL389_1 |
88 |
0 |
0 |
0 |
0 |
0 |
0 |
T I D |
NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition
Adam Zemla, 03/27/2001