Sequence Independent Analysis
LGA results for Target: T0128_2

Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms

Total number of 3D " MODELS 1 " submitted for target T0128_2 : 92

Models ordered by number of AL4+ aligned residues (DIST=5.0)


AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE

AL0 | AL4 | AL4+


Alignment details


Closest PDB structure (1bs3_A) to the target T0128_2


Submitted models


Details about the closest PDB structure to the target T0128_2
PDB structure
N_AA
N(dist=5.0)
RMSD(N)
Seq_Id
LGA_Q
PLOTS
1bs3_A
201
117
0.95
45.30
11.187
T I


Models ordered by number of AL4+ aligned residues (DIST=5.0)
GROUP Name MODEL Number
NT
NP
N(dist=5.0)
AL4
AL0
RMSD(N)
LGA_Q
PLOTS
baker T0128TS354_1
123
123
119
118
117
1.09
10.000
T I D
Shoshana-Wodak T0128TS486_1
123
123
119
117
117
1.12
9.754
T I D
SAM-T2K T0128TS094_1
123
123
119
116
115
1.23
8.947
T I D
Vajda T0128TS241_1
123
123
118
118
118
0.88
12.041
T I D
Ginalski T0128TS526_1
123
123
118
117
116
0.83
12.688
T I D
GNM-FR T0128TS161_1
123
123
118
116
115
1.18
9.219
T I D
VENCLOVAS T0128TS406_1
123
117
117
117
117
0.67
15.195
T I D
shankari T0128TS535_1
123
117
117
117
117
0.83
12.581
T I D
GenTHREADER T0128AL259_1
123
117
117
117
117
0.85
12.316
T I D
mGenTHREADER T0128AL260_1
123
117
117
117
117
0.85
12.316
T I D
123D+ T0128AL389_1
123
117
117
117
117
0.85
12.316
T I D
Zemla-Joanna T0128TS330_1
123
117
117
117
117
0.85
12.316
T I D
Moult T0128TS363_1
123
117
117
117
117
0.85
12.316
T I D
Fox-Sheppard T0128AL536_1
123
117
117
116
116
0.85
12.316
T I D
BioInfo.PL T0128TS031_1
123
123
117
116
116
0.86
12.188
T I D
Yoon T0128TS152_1
123
123
117
116
116
0.86
12.188
T I D
CHEN-WENDY T0128TS429_1
123
117
117
116
116
0.86
12.188
T I D
Taylor T0128TS390_1
123
120
117
117
116
0.97
10.935
T I D
Ho-Kai-Ming T0128AL375_1
123
117
117
115
115
0.91
11.584
T I D
Wolynes T0128TS032_1
123
117
117
115
115
0.91
11.584
T I D
Godzik T0128TS197_1
123
117
117
115
115
0.91
11.584
T I D
ORNL-PROSPECT T0128TS088_1
123
123
117
115
115
0.92
11.471
T I D
SBI-GR T0128TS457_1
123
118
117
115
115
0.96
11.038
T I D
Flake&mates T0128TS278_1
123
117
117
115
114
0.94
11.250
T I D
Noguchi T0128AL453_1
123
118
117
115
112
1.11
9.669
T I D
Torda-Andrew T0128TS065_1
123
117
117
115
110
0.94
11.250
T I D
Sternberg T0128TS126_1
123
116
116
116
116
0.60
16.571
T I D
SBI-AT T0128TS342_1
123
116
116
116
116
0.62
16.111
T I D
Jones T0128TS023_1
123
116
116
116
116
0.79
13.034
T I D
Ram-Samudrala T0128TS028_1
123
123
116
116
116
0.81
12.747
T I D
bioinbgu-gonp T0128AL104_1
123
116
116
116
116
0.82
12.609
T I D
CBC-FOLD T0128AL133_1
123
116
116
116
116
0.82
12.609
T I D
Barton T0128AL173_1
123
116
116
116
116
0.82
12.609
T I D
Cafasp-consensus T0128AL359_1
123
116
116
116
116
0.82
12.609
T I D
YASARA T0128TS465_1
123
116
116
116
116
0.82
12.609
T I D
bioinbgu T0128AL093_1
123
116
116
114
114
0.93
11.262
T I D
bioinbgu-seqpprf T0128AL106_1
123
116
116
114
114
0.93
11.262
T I D
bioinbgu-seqpmprf T0128AL107_1
123
116
116
114
114
0.93
11.262
T I D
Fischer-Daniel T0128AL357_1
123
116
116
114
114
0.93
11.262
T I D
Yang-Ansuei T0128TS017_1
123
116
116
114
114
0.97
10.841
T I D
Walts-Wondrous-Wizards T0128AL044_1
123
117
116
115
112
1.02
10.357
T I D
MRIT-Onizuka T0128AL052_1
123
117
116
115
112
1.02
10.357
T I D
Bass-Michael T0128TS086_1
123
117
116
115
112
1.02
10.357
T I D
Lee-Jung T0128TS191_1
123
116
116
116
111
0.90
11.600
T I D
SBfold T0128TS381_1
123
123
116
113
111
1.23
8.722
T I D
Levitt T0128TS012_1
123
115
115
115
115
0.72
14.024
T I D
TUDELFT T0128TS155_1u
123
115
115
115
115
0.73
13.855
T I D
TUDELFT T0128TS155_1
123
115
115
115
115
0.74
13.690
T I D
MSI T0128TS447_1
123
115
115
115
115
0.76
13.372
T I D
SDSC1 T0128TS186_1
123
115
115
115
115
0.77
13.218
T I D
SBI-jz T0128TS468_1
123
115
115
115
115
0.77
13.218
T I D
MOE-CCG T0128TS444_1
123
115
115
114
114
0.92
11.275
T I D
Honig-Barry T0128TS042_1
123
115
115
112
111
1.24
8.582
T I D
Braun-UTMB T0128TS223_1
123
116
115
112
110
1.45
7.419
T I D
Friesner T0128TS414_1
123
123
115
113
109
1.43
7.516
T I D
FFAS T0128XA395_1.late
123
114
114
114
114
0.60
16.286
T I D
GMD-SCAI T0128AL361_1
123
114
114
114
114
0.63
15.616
T I D
Dunbrack T0128TS169_1
123
116
114
112
111
0.99
10.459
T I D
blundell-tl T0128TS095_1
123
116
114
112
110
1.11
9.421
T I D
Sternberg-3D-JIGSAW T0128TS125_1
123
116
114
111
107
1.21
8.702
T I D
Sausage T0128TS179_1
123
114
114
109
104
0.61
16.056
T I D
FFAS T0128AL395_1
123
114
114
114
0
0.60
16.286
T I D
Sali-Andrej T0128TS237_1
123
113
113
113
113
0.48
19.483
T I D
Pan T0128AL010_1
123
113
113
111
109
0.61
15.915
T I D
LAMBERT-Christophe T0128TS218_1
123
116
113
111
109
1.00
10.273
T I D
Fugue-Cam T0128AL103_1
123
112
112
112
112
0.75
13.176
T I D
PDB-Blast T0128AL158_1
123
114
112
111
108
0.94
10.769
T I D
Sternberg-3DPSSM T0128AL132_1
123
114
112
111
108
0.97
10.467
T I D
ssPsi/Elofsson-Arne T0128AL127_1u
123
114
112
110
107
0.97
10.467
T I D
SAM-T99 T0128AL111_1
123
114
112
110
107
1.03
9.912
T I D
bioinbgu-gonpm T0128AL105_1
123
115
112
110
107
1.10
9.333
T I D
bioinbgu-prfseq T0128AL108_1
123
115
112
110
107
1.10
9.333
T I D
Chandonia-Cohen T0128AL150_1
123
112
112
108
106
0.93
10.874
T I D
kitasato-univ. T0128TS047_1
123
113
111
109
107
1.11
9.174
T I D
InforMax T0128TS022_1
123
115
110
108
108
1.08
9.322
T I D
Levy T0128AL331_1
123
111
109
108
105
0.93
10.583
T I D
Tsigelny T0128AL274_1
123
111
109
108
105
1.04
9.561
T I D
SBauto T0128TS382_1
123
123
108
102
99
1.50
6.750
T I D
Elber-Meller-2000 T0128AL280_1
123
112
108
106
87
1.34
7.500
T I D
Harrison-Weber T0128TS058_1
123
123
105
85
72
2.54
3.977
T I D
rost T0128TS077_1
123
104
104
104
104
0.73
12.530
T I D
Skolnick-Kolinski-THD T0128TS393_1
123
123
104
89
65
2.66
3.768
T I D
Zhou-HX T0128AL137_1
123
103
103
103
103
0.71
12.716
T I D
BinToHes T0128TS255_1
123
123
101
95
93
1.58
6.012
T I D
SDSC2:Reddy-Bourne T0128TS187_1u
123
64
64
63
60
1.60
3.765
T I D
Bystroff T0128TS055_1
123
123
47
23
10
3.04
1.497
T I D
Raghava-GPS T0128TS018_1u
123
123
40
4
1
3.40
1.143
T I D
Dill-Ken T0128TS243_1
123
123
38
11
0
3.28
1.124
T I D
ELAN T0128TS512_1
123
123
38
11
0
3.28
1.124
T I D
WXW T0128AL273_1
123
97
37
15
1
3.21
1.118
T I D
Isites-Server T0128TS216_1
123
123
36
1
0
3.12
1.118
T I D
Del-Carpio-Yoshimori T0128TS045_1
123
123
32
4
0
3.56
0.874
T I D


NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition


Adam Zemla, 03/27/2001