Sequence Independent Analysis
LGA results for Target: T0128_2
Cutoff used for structure superpositions: DISTANCE 5.0 Angstroms
Total number of 3D " MODELS 1 " submitted for target T0128_2 : 92
Models ordered by number of AL4+ aligned residues (DIST=5.0)
AL0 : Correctly aligned residues (0 shift): GREEN
AL4 : Residues aligned within " -4 , +4 " window (4 shift): Yellow
AL4+ : Residues aligned outside " -4 , +4 " window (4+ shift): RED
Residues not aligned or not predicted: WHITE
Alignment details
Closest PDB structure (1bs3_A) to the target T0128_2
Submitted models
Details about the closest PDB structure to the target T0128_2
| PDB structure |
N_AA |
N(dist=5.0) |
RMSD(N) |
Seq_Id |
LGA_Q |
PLOTS |
| 1bs3_A |
201 |
117 |
0.95 |
45.30 |
11.187 |
T I |
Models ordered by number of AL4+ aligned residues (DIST=5.0)
| GROUP Name |
MODEL Number |
NT |
NP |
N(dist=5.0) |
AL4 |
AL0 |
RMSD(N) |
LGA_Q |
PLOTS |
| baker |
T0128TS354_1 |
123 |
123 |
119 |
118 |
117 |
1.09 |
10.000 |
T I D |
| Shoshana-Wodak |
T0128TS486_1 |
123 |
123 |
119 |
117 |
117 |
1.12 |
9.754 |
T I D |
| SAM-T2K |
T0128TS094_1 |
123 |
123 |
119 |
116 |
115 |
1.23 |
8.947 |
T I D |
| Vajda |
T0128TS241_1 |
123 |
123 |
118 |
118 |
118 |
0.88 |
12.041 |
T I D |
| Ginalski |
T0128TS526_1 |
123 |
123 |
118 |
117 |
116 |
0.83 |
12.688 |
T I D |
| GNM-FR |
T0128TS161_1 |
123 |
123 |
118 |
116 |
115 |
1.18 |
9.219 |
T I D |
| VENCLOVAS |
T0128TS406_1 |
123 |
117 |
117 |
117 |
117 |
0.67 |
15.195 |
T I D |
| shankari |
T0128TS535_1 |
123 |
117 |
117 |
117 |
117 |
0.83 |
12.581 |
T I D |
| GenTHREADER |
T0128AL259_1 |
123 |
117 |
117 |
117 |
117 |
0.85 |
12.316 |
T I D |
| mGenTHREADER |
T0128AL260_1 |
123 |
117 |
117 |
117 |
117 |
0.85 |
12.316 |
T I D |
| 123D+ |
T0128AL389_1 |
123 |
117 |
117 |
117 |
117 |
0.85 |
12.316 |
T I D |
| Zemla-Joanna |
T0128TS330_1 |
123 |
117 |
117 |
117 |
117 |
0.85 |
12.316 |
T I D |
| Moult |
T0128TS363_1 |
123 |
117 |
117 |
117 |
117 |
0.85 |
12.316 |
T I D |
| Fox-Sheppard |
T0128AL536_1 |
123 |
117 |
117 |
116 |
116 |
0.85 |
12.316 |
T I D |
| BioInfo.PL |
T0128TS031_1 |
123 |
123 |
117 |
116 |
116 |
0.86 |
12.188 |
T I D |
| Yoon |
T0128TS152_1 |
123 |
123 |
117 |
116 |
116 |
0.86 |
12.188 |
T I D |
| CHEN-WENDY |
T0128TS429_1 |
123 |
117 |
117 |
116 |
116 |
0.86 |
12.188 |
T I D |
| Taylor |
T0128TS390_1 |
123 |
120 |
117 |
117 |
116 |
0.97 |
10.935 |
T I D |
| Ho-Kai-Ming |
T0128AL375_1 |
123 |
117 |
117 |
115 |
115 |
0.91 |
11.584 |
T I D |
| Wolynes |
T0128TS032_1 |
123 |
117 |
117 |
115 |
115 |
0.91 |
11.584 |
T I D |
| Godzik |
T0128TS197_1 |
123 |
117 |
117 |
115 |
115 |
0.91 |
11.584 |
T I D |
| ORNL-PROSPECT |
T0128TS088_1 |
123 |
123 |
117 |
115 |
115 |
0.92 |
11.471 |
T I D |
| SBI-GR |
T0128TS457_1 |
123 |
118 |
117 |
115 |
115 |
0.96 |
11.038 |
T I D |
| Flake&mates |
T0128TS278_1 |
123 |
117 |
117 |
115 |
114 |
0.94 |
11.250 |
T I D |
| Noguchi |
T0128AL453_1 |
123 |
118 |
117 |
115 |
112 |
1.11 |
9.669 |
T I D |
| Torda-Andrew |
T0128TS065_1 |
123 |
117 |
117 |
115 |
110 |
0.94 |
11.250 |
T I D |
| Sternberg |
T0128TS126_1 |
123 |
116 |
116 |
116 |
116 |
0.60 |
16.571 |
T I D |
| SBI-AT |
T0128TS342_1 |
123 |
116 |
116 |
116 |
116 |
0.62 |
16.111 |
T I D |
| Jones |
T0128TS023_1 |
123 |
116 |
116 |
116 |
116 |
0.79 |
13.034 |
T I D |
| Ram-Samudrala |
T0128TS028_1 |
123 |
123 |
116 |
116 |
116 |
0.81 |
12.747 |
T I D |
| bioinbgu-gonp |
T0128AL104_1 |
123 |
116 |
116 |
116 |
116 |
0.82 |
12.609 |
T I D |
| CBC-FOLD |
T0128AL133_1 |
123 |
116 |
116 |
116 |
116 |
0.82 |
12.609 |
T I D |
| Barton |
T0128AL173_1 |
123 |
116 |
116 |
116 |
116 |
0.82 |
12.609 |
T I D |
| Cafasp-consensus |
T0128AL359_1 |
123 |
116 |
116 |
116 |
116 |
0.82 |
12.609 |
T I D |
| YASARA |
T0128TS465_1 |
123 |
116 |
116 |
116 |
116 |
0.82 |
12.609 |
T I D |
| bioinbgu |
T0128AL093_1 |
123 |
116 |
116 |
114 |
114 |
0.93 |
11.262 |
T I D |
| bioinbgu-seqpprf |
T0128AL106_1 |
123 |
116 |
116 |
114 |
114 |
0.93 |
11.262 |
T I D |
| bioinbgu-seqpmprf |
T0128AL107_1 |
123 |
116 |
116 |
114 |
114 |
0.93 |
11.262 |
T I D |
| Fischer-Daniel |
T0128AL357_1 |
123 |
116 |
116 |
114 |
114 |
0.93 |
11.262 |
T I D |
| Yang-Ansuei |
T0128TS017_1 |
123 |
116 |
116 |
114 |
114 |
0.97 |
10.841 |
T I D |
| Walts-Wondrous-Wizards |
T0128AL044_1 |
123 |
117 |
116 |
115 |
112 |
1.02 |
10.357 |
T I D |
| MRIT-Onizuka |
T0128AL052_1 |
123 |
117 |
116 |
115 |
112 |
1.02 |
10.357 |
T I D |
| Bass-Michael |
T0128TS086_1 |
123 |
117 |
116 |
115 |
112 |
1.02 |
10.357 |
T I D |
| Lee-Jung |
T0128TS191_1 |
123 |
116 |
116 |
116 |
111 |
0.90 |
11.600 |
T I D |
| SBfold |
T0128TS381_1 |
123 |
123 |
116 |
113 |
111 |
1.23 |
8.722 |
T I D |
| Levitt |
T0128TS012_1 |
123 |
115 |
115 |
115 |
115 |
0.72 |
14.024 |
T I D |
| TUDELFT |
T0128TS155_1u |
123 |
115 |
115 |
115 |
115 |
0.73 |
13.855 |
T I D |
| TUDELFT |
T0128TS155_1 |
123 |
115 |
115 |
115 |
115 |
0.74 |
13.690 |
T I D |
| MSI |
T0128TS447_1 |
123 |
115 |
115 |
115 |
115 |
0.76 |
13.372 |
T I D |
| SDSC1 |
T0128TS186_1 |
123 |
115 |
115 |
115 |
115 |
0.77 |
13.218 |
T I D |
| SBI-jz |
T0128TS468_1 |
123 |
115 |
115 |
115 |
115 |
0.77 |
13.218 |
T I D |
| MOE-CCG |
T0128TS444_1 |
123 |
115 |
115 |
114 |
114 |
0.92 |
11.275 |
T I D |
| Honig-Barry |
T0128TS042_1 |
123 |
115 |
115 |
112 |
111 |
1.24 |
8.582 |
T I D |
| Braun-UTMB |
T0128TS223_1 |
123 |
116 |
115 |
112 |
110 |
1.45 |
7.419 |
T I D |
| Friesner |
T0128TS414_1 |
123 |
123 |
115 |
113 |
109 |
1.43 |
7.516 |
T I D |
| FFAS |
T0128XA395_1.late |
123 |
114 |
114 |
114 |
114 |
0.60 |
16.286 |
T I D |
| GMD-SCAI |
T0128AL361_1 |
123 |
114 |
114 |
114 |
114 |
0.63 |
15.616 |
T I D |
| Dunbrack |
T0128TS169_1 |
123 |
116 |
114 |
112 |
111 |
0.99 |
10.459 |
T I D |
| blundell-tl |
T0128TS095_1 |
123 |
116 |
114 |
112 |
110 |
1.11 |
9.421 |
T I D |
| Sternberg-3D-JIGSAW |
T0128TS125_1 |
123 |
116 |
114 |
111 |
107 |
1.21 |
8.702 |
T I D |
| Sausage |
T0128TS179_1 |
123 |
114 |
114 |
109 |
104 |
0.61 |
16.056 |
T I D |
| FFAS |
T0128AL395_1 |
123 |
114 |
114 |
114 |
0 |
0.60 |
16.286 |
T I D |
| Sali-Andrej |
T0128TS237_1 |
123 |
113 |
113 |
113 |
113 |
0.48 |
19.483 |
T I D |
| Pan |
T0128AL010_1 |
123 |
113 |
113 |
111 |
109 |
0.61 |
15.915 |
T I D |
| LAMBERT-Christophe |
T0128TS218_1 |
123 |
116 |
113 |
111 |
109 |
1.00 |
10.273 |
T I D |
| Fugue-Cam |
T0128AL103_1 |
123 |
112 |
112 |
112 |
112 |
0.75 |
13.176 |
T I D |
| PDB-Blast |
T0128AL158_1 |
123 |
114 |
112 |
111 |
108 |
0.94 |
10.769 |
T I D |
| Sternberg-3DPSSM |
T0128AL132_1 |
123 |
114 |
112 |
111 |
108 |
0.97 |
10.467 |
T I D |
| ssPsi/Elofsson-Arne |
T0128AL127_1u |
123 |
114 |
112 |
110 |
107 |
0.97 |
10.467 |
T I D |
| SAM-T99 |
T0128AL111_1 |
123 |
114 |
112 |
110 |
107 |
1.03 |
9.912 |
T I D |
| bioinbgu-gonpm |
T0128AL105_1 |
123 |
115 |
112 |
110 |
107 |
1.10 |
9.333 |
T I D |
| bioinbgu-prfseq |
T0128AL108_1 |
123 |
115 |
112 |
110 |
107 |
1.10 |
9.333 |
T I D |
| Chandonia-Cohen |
T0128AL150_1 |
123 |
112 |
112 |
108 |
106 |
0.93 |
10.874 |
T I D |
| kitasato-univ. |
T0128TS047_1 |
123 |
113 |
111 |
109 |
107 |
1.11 |
9.174 |
T I D |
| InforMax |
T0128TS022_1 |
123 |
115 |
110 |
108 |
108 |
1.08 |
9.322 |
T I D |
| Levy |
T0128AL331_1 |
123 |
111 |
109 |
108 |
105 |
0.93 |
10.583 |
T I D |
| Tsigelny |
T0128AL274_1 |
123 |
111 |
109 |
108 |
105 |
1.04 |
9.561 |
T I D |
| SBauto |
T0128TS382_1 |
123 |
123 |
108 |
102 |
99 |
1.50 |
6.750 |
T I D |
| Elber-Meller-2000 |
T0128AL280_1 |
123 |
112 |
108 |
106 |
87 |
1.34 |
7.500 |
T I D |
| Harrison-Weber |
T0128TS058_1 |
123 |
123 |
105 |
85 |
72 |
2.54 |
3.977 |
T I D |
| rost |
T0128TS077_1 |
123 |
104 |
104 |
104 |
104 |
0.73 |
12.530 |
T I D |
| Skolnick-Kolinski-THD |
T0128TS393_1 |
123 |
123 |
104 |
89 |
65 |
2.66 |
3.768 |
T I D |
| Zhou-HX |
T0128AL137_1 |
123 |
103 |
103 |
103 |
103 |
0.71 |
12.716 |
T I D |
| BinToHes |
T0128TS255_1 |
123 |
123 |
101 |
95 |
93 |
1.58 |
6.012 |
T I D |
| SDSC2:Reddy-Bourne |
T0128TS187_1u |
123 |
64 |
64 |
63 |
60 |
1.60 |
3.765 |
T I D |
| Bystroff |
T0128TS055_1 |
123 |
123 |
47 |
23 |
10 |
3.04 |
1.497 |
T I D |
| Raghava-GPS |
T0128TS018_1u |
123 |
123 |
40 |
4 |
1 |
3.40 |
1.143 |
T I D |
| Dill-Ken |
T0128TS243_1 |
123 |
123 |
38 |
11 |
0 |
3.28 |
1.124 |
T I D |
| ELAN |
T0128TS512_1 |
123 |
123 |
38 |
11 |
0 |
3.28 |
1.124 |
T I D |
| WXW |
T0128AL273_1 |
123 |
97 |
37 |
15 |
1 |
3.21 |
1.118 |
T I D |
| Isites-Server |
T0128TS216_1 |
123 |
123 |
36 |
1 |
0 |
3.12 |
1.118 |
T I D |
| Del-Carpio-Yoshimori |
T0128TS045_1 |
123 |
123 |
32 |
4 |
0 |
3.56 |
0.874 |
T I D |
NT : Total number of residues in TARGET
NP : Total number of residues in MODEL (predicted)
N : Total number of residues superimposed under 5.0 Angstrom distance cutoff
RMSD : RMSD calculated on all N residues superimposed under 5.0 Angstrom distance cutoff
LGA_Q : LGA Q (quality) score calculated by the formula: Q = 0.1*N/(0.1+RMSD)
Seq_Id : Sequence Identity. Percent of identical residues from the total of N aligned.
PLOTS : T - Flat text file (output from LGA program)
PLOTS : I - sequence independent superposition
PLOTS : D - sequence dependent superposition
Adam Zemla, 03/27/2001