####################################################### # # # ACE # # # # Ab-initio protein structure prediction # # & # # Comparative modeling # # # # Evaluator # # # # ----------------- 09/2000 # # # # by # # Adam Zemla # # # # Protein Structure Prediction Center # # Lawrence Livermore National Laboratory, CA # # # ####################################################### ########################## # # # ACE parameters: # # # ########################## SOV-METHOD 1 # 1 - SOV, 0 - SOV 94 # SS-DSSP-STRIDE 1 # 1 - DSSP, 2 - STRIDE (SS format only) SS-OUTPUT 1 # 1 - ON, 0 - OFF ########################## # # # ACE results: # # # ########################## # The number of residues in SS section: 280 , MODEL 282 , TARGET 280 # The number of residues possible to evaluate: 263 SECONDARY STRUCTURE PREDICTION: NUM RES SS Prediction Probability SSP 3 P C C 1.00 SSP 4 P C C 0.80 SSP 5 A C C 0.50 SSP 6 Q E E 0.10 SSP 7 L E E 0.90 SSP 8 S E E 0.90 SSP 9 V E E 1.00 SSP 10 H E E 1.00 SSP 11 T E E 1.00 SSP 12 V E E 0.90 SSP 13 S E E 0.90 SSP 14 W E E 0.90 SSP 15 N E E 0.60 SSP 16 S E C 0.80 SSP 17 G E C 0.90 SSP 18 H C C 0.90 SSP 19 E C C 0.80 SSP 20 R C C 0.80 SSP 21 A C C 0.90 SSP 22 P C C 0.90 SSP 23 T C C 0.80 SSP 24 N C C 0.10 SSP 25 L H H 0.50 SSP 26 E H H 0.60 SSP 27 E H H 0.70 SSP 28 L H H 0.60 SSP 29 L H H 0.80 SSP 30 G C C 0.60 SSP 31 L C C 0.80 SSP 32 N C C 1.00 SSP 33 S C C 1.00 SSP 34 G C C 1.00 SSP 35 E C C 1.00 SSP 36 T C C 1.00 SSP 37 P C C 0.70 SSP 38 D C C 0.40 SSP 39 V E E 0.90 SSP 40 I E E 0.90 SSP 41 A E E 0.90 SSP 42 V E E 0.90 SSP 43 A E E 0.50 SSP 44 V E E 0.50 SSP 45 Q E E 0.40 SSP 46 G E E 0.30 SSP 47 F C E 0.60 SSP 48 G C E 0.60 SSP 49 F C E 0.00 SSP 50 Q C E 0.00 SSP 51 T C C 0.20 SSP 52 D C C 0.20 SSP 53 K C C 0.70 SSP 54 P C C 0.70 SSP 55 Q C C 0.50 SSP 56 Q H C 0.00 SSP 57 G H H 0.70 SSP 58 P H H 0.90 SSP 59 A H H 0.90 SSP 60 C H H 0.90 SSP 61 V H H 0.90 SSP 62 K H H 0.90 SSP 63 N H H 0.90 SSP 64 F H H 0.80 SSP 65 Q H H 0.80 SSP 66 S H H 0.60 SSP 67 L H H 0.10 SSP 68 L H C 0.80 SSP 69 T H C 0.80 SSP 70 S H C 0.60 SSP 71 K H C 0.90 SSP 72 G C C 0.80 SSP 73 Y E E 0.60 SSP 74 T E E 0.80 SSP 75 K E E 0.70 SSP 76 L E E 0.70 SSP 77 K E E 0.60 SSP 78 N E E 0.70 SSP 79 T E E 0.10 SSP 80 I E H 0.60 SSP 81 T C H 0.60 SSP 82 E C H 0.60 SSP 83 T C H 0.60 SSP 84 M E H 0.60 SSP 85 G E H 0.10 SSP 86 L E E 0.80 SSP 87 T E E 0.10 SSP 88 V E E 0.60 SSP 89 Y E E 0.60 SSP 90 C E E 0.80 SSP 91 L E C 0.40 SSP 92 E H C 0.00 SSP 93 K H C 0.10 SSP 94 H H C 0.50 SSP 95 L C C 0.70 SSP 96 D C C 0.90 SSP 97 Q C C 0.20 SSP 98 N C C 0.10 SSP 99 T C E 0.10 SSP 100 L C E 0.10 SSP 101 K C C 0.50 SSP 102 N C C 0.50 SSP 103 E E C 0.50 SSP 104 T E E 0.80 SSP 105 I E E 0.60 SSP 106 I E E 0.70 SSP 107 V E E 0.70 SSP 108 T E E 0.10 SSP 109 V C E 0.00 SSP 110 D C C 0.90 SSP 111 D C C 0.90 SSP 112 Q C C 0.60 SSP 113 K C C 0.90 SSP 114 K C C 0.70 SSP 115 S C C 0.60 SSP 116 G E C 0.80 SSP 117 G E E 0.20 SSP 118 I E E 0.80 SSP 119 V E E 1.00 SSP 120 T E E 0.90 SSP 121 S E E 0.90 SSP 122 F E E 1.00 SSP 123 T E E 1.00 SSP 124 I E E 1.00 SSP 125 Y C E 0.20 SSP 126 N C C 0.40 SSP 127 K E C 0.70 SSP 128 R E E 0.90 SSP 129 F E E 0.90 SSP 130 S E E 0.90 SSP 131 F E E 0.90 SSP 132 T E E 0.80 SSP 133 T E E 0.70 SSP 134 S E C 0.60 SSP 135 R E C 0.30 SSP 136 M C C 0.60 SSP 137 S C C 0.70 SSP 138 D C C 0.20 SSP 139 E C C 0.10 SSP 140 D C C 0.00 SSP 141 V C H 0.00 SSP 142 T C H 0.10 SSP 143 S C H 0.10 SSP 144 T C C 0.10 SSP 145 N C H 0.00 SSP 146 T C H 0.40 SSP 147 K C H 0.60 SSP 148 Y C H 0.70 SSP 149 A C H 0.50 SSP 150 Y C H 0.50 SSP 151 D C H 0.50 SSP 152 T H H 0.00 SSP 153 R H H 0.00 SSP 154 L H C 0.70 SSP 155 D C C 0.70 SSP 156 Y C C 0.70 SSP 157 S C C 0.80 SSP 158 K C C 0.70 SSP 159 K C C 0.80 SSP 160 D C C 0.90 SSP 161 D C C 0.90 SSP 162 P C C 0.80 SSP 163 S C C 0.80 SSP 164 D C C 0.60 SSP 165 F E E 0.90 SSP 166 L E E 1.00 SSP 167 F E E 1.00 SSP 168 W E E 1.00 SSP 169 I E E 0.70 SSP 170 G E C 0.60 SSP 171 D E C 0.90 SSP 172 L C C 0.70 SSP 173 N C C 0.80 SSP 174 V C E 0.70 SSP 175 R C E 0.80 SSP 176 V E E 0.60 SSP 177 E C C 0.80 SSP 178 T C C 0.80 SSP 179 N C C 0.90 SSP 180 A H H 0.70 SSP 181 T H H 0.90 SSP 182 H H H 1.00 SSP 183 A H H 0.90 SSP 184 K H H 0.90 SSP 185 S H H 0.80 SSP 186 L H H 0.80 SSP 187 V H H 0.80 SSP 188 D H H 0.50 SSP 189 Q C H 0.00 SSP 190 N C C 0.50 SSP 191 N C C 0.60 SSP 192 I H H 0.50 SSP 193 D H H 0.90 SSP 194 G H H 0.80 SSP 195 L H H 0.80 SSP 196 M H H 0.80 SSP 197 A C H 0.80 SSP 198 F C H 0.70 SSP 199 D E H 0.90 SSP 200 Q C H 0.90 SSP 201 L H H 0.80 SSP 202 K H H 0.80 SSP 203 K H H 0.90 SSP 204 A H H 0.90 SSP 205 K H H 0.90 SSP 206 E H H 0.90 SSP 207 Q C H 0.00 SSP 208 K C H 0.10 SSP 209 L C H 0.10 SSP 210 F C C 0.10 SSP 211 D C C 0.30 SSP 212 G C C 0.60 SSP 213 W C C 0.60 SSP 214 T E C 0.30 SSP 215 E C C 0.80 SSP 216 P C C 0.80 SSP 217 Q C C 0.20 SSP 218 V C C 0.00 SSP 219 T C E 0.00 SSP 220 F C C 0.80 SSP 221 K C C 1.00 SSP 222 P C C 1.00 SSP 223 T C C 0.70 SSP 224 Y E C 0.80 SSP 225 K C C 0.90 SSP 226 F E C 0.80 SSP 227 K C C 0.90 SSP 228 P C C 1.00 SSP 229 N C C 1.00 SSP 230 T C C 0.50 SSP 231 D C C 0.30 SSP 232 E C C 0.20 SSP 233 Y E C 0.50 SSP 234 D C C 0.50 SSP 235 L C C 0.80 SSP 236 S C C 0.80 SSP 237 A C C 0.90 SSP 238 T C C 1.00 SSP 239 P C C 0.90 SSP 240 S E C 0.70 SSP 241 W C C 0.20 SSP 242 T C C 0.00 SSP 243 D E C 0.60 SSP 244 R E E 0.20 SSP 245 A E E 0.60 SSP 246 L E E 0.50 SSP 247 Y E E 0.60 SSP 248 K E C 0.30 SSP 249 S C C 1.00 SSP 250 G C C 0.90 SSP 251 T C C 0.90 SSP 252 G C C 0.90 SSP 253 K C C 0.70 SSP 254 T C C 0.60 SSP 255 I E C 0.70 SSP 256 Q E C 0.20 SSP 257 P E E 0.50 SSP 258 L E C 0.00 SSP 259 S E E 0.10 SSP 260 Y E E 0.60 SSP 261 N E C 0.10 SSP 262 S E C 0.50 SSP 263 L C C 0.30 SSP 264 T C C 0.20 SSP 265 N C C 0.20 SSP 266 Y C C 0.10 SSP 267 K C C 0.10 SSP 268 Q C C 0.60 SSP 269 T C C 0.80 SSP 270 E C C 0.90 SSP 271 H C C 0.90 SSP 272 R C C 0.90 SSP 273 P C C 0.00 SSP 274 V E E 0.80 SSP 275 L E E 0.80 SSP 276 A E E 0.90 SSP 277 K E E 0.90 SSP 278 F E E 0.90 SSP 279 R E E 0.80 SSP 280 V E E 0.60 SSP 281 T E E 0.20 SSP 282 L C C 0.90 NP - Number of predicted residues PP - Percent of predicted residues Q3 - Residues predicted correctly (H, E, C) Qhelix - Residues predicted correctly (HELIX) Qstrand - Residues predicted correctly (STRAND) Qcoil - Residues predicted correctly (COIL) SOV - Segment overlap quantity Q3 Qhelix Qstrand Qcoil PP Qindex 79.1 83.7 73.7 81.6 93.9 ALL HELIX STRAND COIL PP SOV observed 77.7 81.2 88.8 68.6 93.9 Considered Percent predicted Percent predicted segments correctly as wrong type SEG 18 92.2 2.3 Number of wrong Number of wrong breaks joins B/J 0 1 CONFIDENCE (P) Average NP PP/BIN Q3 BIN 0.00 - 0.10 0.10 22 8.4 59.1 BIN 0.10 - 0.20 0.20 14 5.3 85.7 BIN 0.20 - 0.30 0.30 7 2.7 57.1 BIN 0.30 - 0.40 0.40 5 1.9 60.0 BIN 0.40 - 0.50 0.50 21 8.0 66.7 BIN 0.50 - 0.60 0.60 36 13.7 66.7 BIN 0.60 - 0.70 0.70 29 11.0 75.9 BIN 0.70 - 0.80 0.80 47 17.9 83.0 BIN 0.80 - 0.90 0.90 59 22.4 91.5 BIN 0.90 - 1.00 1.00 23 8.7 100.0 BIN 0.00 - 1.00 0.67 263 100.0 79.1 END of the results output