####################################################### # # # ACE # # # # Ab-initio protein structure prediction # # & # # Comparative modeling # # # # Evaluator # # # # ----------------- 09/2000 # # # # by # # Adam Zemla # # # # Protein Structure Prediction Center # # Lawrence Livermore National Laboratory, CA # # # ####################################################### ########################## # # # ACE parameters: # # # ########################## SOV-METHOD 1 # 1 - SOV, 0 - SOV 94 # SS-DSSP-STRIDE 1 # 1 - DSSP, 2 - STRIDE (SS format only) SS-OUTPUT 1 # 1 - ON, 0 - OFF ########################## # # # ACE results: # # # ########################## # The number of residues in SS section: 120 , MODEL 138 , TARGET 120 # The number of residues possible to evaluate: 120 SECONDARY STRUCTURE PREDICTION: NUM RES SS Prediction Probability SSP 2 S C C 0.56 SSP 3 G C C 0.19 SSP 4 T E E 0.31 SSP 5 L E E 0.86 SSP 6 L E E 0.97 SSP 7 A E E 0.96 SSP 8 F E E 0.92 SSP 9 D E E 0.69 SSP 10 F C E 0.02 SSP 11 G C C 0.70 SSP 12 T C C 0.82 SSP 13 K C C 0.63 SSP 14 S E E 0.34 SSP 15 I E E 0.77 SSP 16 G E E 0.89 SSP 17 V E E 0.89 SSP 18 A E E 0.69 SSP 19 V E E 0.30 SSP 20 G E C 0.42 SSP 21 Q E C 0.73 SSP 22 R C C 0.55 SSP 23 I C C 0.25 SSP 24 T C H 0.05 SSP 25 G C H 0.32 SSP 26 T E H 0.46 SSP 27 A E H 0.52 SSP 28 R E H 0.47 SSP 29 P E H 0.35 SSP 30 L E H 0.64 SSP 31 P E H 0.64 SSP 32 A E H 0.67 SSP 33 I E H 0.63 SSP 34 K E H 0.40 SSP 35 A C C 0.19 SSP 36 Q E C 0.63 SSP 37 D C C 0.72 SSP 38 G C C 0.78 SSP 39 T E C 0.68 SSP 40 P C C 0.57 SSP 41 D C C 0.31 SSP 42 W H H 0.84 SSP 43 N H H 0.93 SSP 44 I H H 0.97 SSP 45 I H H 1.00 SSP 46 E H H 0.98 SSP 47 R H H 0.99 SSP 48 L H H 0.99 SSP 49 L H H 0.97 SSP 50 K H H 0.92 SSP 51 E H H 0.76 SSP 52 W H C 0.18 SSP 53 Q C C 0.91 SSP 54 P C C 0.92 SSP 55 D C C 0.54 SSP 56 E E E 0.78 SSP 57 I E E 0.97 SSP 58 I E E 0.98 SSP 59 V E E 0.90 SSP 60 G E E 0.43 SSP 61 L E C 0.24 SSP 62 P E C 0.65 SSP 63 L E C 0.64 SSP 64 N C C 0.63 SSP 65 M C C 0.62 SSP 66 D C C 0.74 SSP 67 G C C 0.82 SSP 68 T C C 0.81 SSP 69 E E C 0.68 SSP 70 Q C C 0.41 SSP 71 P C H 0.10 SSP 72 L C H 0.75 SSP 73 T H H 0.91 SSP 74 A H H 0.96 SSP 75 R H H 1.00 SSP 76 A H H 0.99 SSP 77 R H H 0.99 SSP 78 K H H 1.00 SSP 79 F H H 1.00 SSP 80 A H H 1.00 SSP 81 N H H 1.00 SSP 82 R H H 0.99 SSP 83 I H H 0.98 SSP 84 H H H 0.94 SSP 85 G H H 0.88 SSP 86 R H H 0.76 SSP 87 F H H 0.09 SSP 88 G C C 0.87 SSP 89 V C C 0.93 SSP 90 E C C 0.33 SSP 91 V E E 0.87 SSP 92 K E E 0.96 SSP 93 L E E 0.94 SSP 94 H E E 0.68 SSP 95 D E E 0.04 SSP 96 E E C 0.66 SSP 97 R C C 0.79 SSP 98 L C C 0.41 SSP 99 S C C 0.31 SSP 100 T C C 0.02 SSP 101 V C H 0.43 SSP BREAK SSP 119 G C H 0.78 SSP 120 K C H 0.83 SSP 121 V H H 0.82 SSP 122 D H H 0.79 SSP 123 S H H 0.84 SSP 124 A H H 0.84 SSP 125 S H H 0.61 SSP 126 A H H 0.38 SSP 127 V H H 0.23 SSP 128 I H H 0.14 SSP 129 I H H 0.13 SSP 130 L H H 0.24 SSP 131 E H H 0.50 SSP 132 S H H 0.66 SSP 133 Y H H 0.71 SSP 134 F H H 0.71 SSP 135 E H H 0.40 SSP 136 Q C C 0.09 SSP 137 G C C 0.45 SSP 138 Y C C 0.87 NP - Number of predicted residues PP - Percent of predicted residues Q3 - Residues predicted correctly (H, E, C) Qhelix - Residues predicted correctly (HELIX) Qstrand - Residues predicted correctly (STRAND) Qcoil - Residues predicted correctly (COIL) SOV - Segment overlap quantity Q3 Qhelix Qstrand Qcoil PP Qindex 77.5 97.6 55.0 79.5 100.0 ALL HELIX STRAND COIL PP SOV observed 80.4 100.0 67.5 73.1 100.0 Considered Percent predicted Percent predicted segments correctly as wrong type SEG 8 87.5 12.5 Number of wrong Number of wrong breaks joins B/J 0 0 CONFIDENCE (P) Average NP PP/BIN Q3 BIN 0.00 - 0.10 0.06 7 5.8 57.1 BIN 0.10 - 0.20 0.17 5 4.2 80.0 BIN 0.20 - 0.30 0.25 5 4.2 80.0 BIN 0.30 - 0.40 0.34 10 8.3 70.0 BIN 0.40 - 0.50 0.44 9 7.5 55.6 BIN 0.50 - 0.60 0.55 5 4.2 80.0 BIN 0.60 - 0.70 0.65 19 15.8 47.4 BIN 0.70 - 0.80 0.75 14 11.7 78.6 BIN 0.80 - 0.90 0.85 16 13.3 93.8 BIN 0.90 - 1.00 0.97 30 25.0 100.0 BIN 0.00 - 1.00 0.65 120 100.0 77.5 END of the results output