PFRMAT AL TARGET T0294 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=52.40 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1ygya METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. METHOD ------------- MODEL 2 PARENT 1ygy_A R 5 S 3 L 6 L 4 M 7 P 5 K 8 V 6 V 9 V 7 F 10 L 8 V 11 I 9 T 12 A 10 R 13 D 11 R 14 K 12 I 15 L 13 P 16 A 14 A 17 P 15 E 18 S 16 G 19 T 17 R 20 V 18 V 21 A 19 A 22 A 20 L 23 L 21 A 24 G 22 R 25 D 23 A 26 Q 24 A 27 V 25 D 28 E 26 C 29 V 27 E 30 R 28 V 31 W 29 D 37 V 30 E 38 D 31 P 39 G 32 I 40 P 33 P 41 D 34 A 42 R 35 K 43 D 36 E 44 K 37 L 45 L 38 E 46 L 39 R 47 A 40 G 48 A 41 V 49 V 42 A 50 P 43 G 51 E 44 A 52 A 45 H 53 D 46 G 54 A 47 L 55 L 48 L 56 L 49 C 57 V 50 L 58 R 51 L 59 S 52 S 60 A 53 D 61 T 54 H 62 T 55 V 63 V 56 D 64 D 57 K 65 A 58 R 66 E 59 I 67 V 60 L 68 L 61 D 69 A 62 A 70 A 63 A 71 A 64 A 73 P 65 N 74 K 66 L 75 L 67 K 76 K 68 V 77 I 69 I 78 V 70 S 79 A 71 T 80 R 72 M 81 A 73 S 82 G 74 V 83 V 75 G 84 G 76 I 85 L 77 D 86 D 78 H 87 N 79 L 88 V 80 A 89 D 81 L 90 V 82 D 91 D 83 E 92 A 84 I 93 A 85 K 94 T 86 K 95 A 87 R 96 R 88 G 97 G 89 I 98 V 90 R 99 L 91 V 100 V 92 G 101 V 93 Y 102 N 94 T 103 A 95 P 104 P 96 D 105 T 97 V 106 S 98 L 107 N 99 T 108 I 100 D 109 H 101 T 110 S 102 T 111 A 103 A 112 A 104 E 113 E 105 L 114 H 106 A 115 A 107 V 116 L 108 S 117 A 109 L 118 L 110 L 119 L 111 L 120 L 112 T 121 A 113 T 122 A 114 C 123 S 115 R 124 R 116 R 125 Q 117 L 126 I 118 P 127 P 119 E 128 A 120 A 129 A 121 I 130 D 122 E 131 A 123 E 132 S 124 V 133 L 125 K 134 R 126 N 135 E 127 G 136 H 128 G 137 T 129 W 138 W 130 T 139 K 131 S 140 R 132 W 141 S 133 K 142 S 134 P 143 F 135 L 144 S 136 G 148 G 137 Y 149 T 138 G 150 E 139 L 151 I 140 T 152 F 141 Q 153 G 142 S 154 K 143 T 155 T 144 V 156 V 145 G 157 G 146 I 158 V 147 I 159 V 148 G 160 G 149 L 161 L 150 G 162 G 151 R 163 R 152 I 164 I 153 G 165 G 154 Q 166 Q 155 A 167 L 156 I 168 V 157 A 169 A 158 R 170 Q 159 R 171 R 160 L 172 I 161 K 173 A 162 P 174 A 163 F 175 F 164 G 176 G 165 V 177 A 166 Q 178 Y 167 R 179 V 168 F 180 V 169 L 181 A 170 Y 182 Y 171 T 183 D 172 G 184 P 173 R 185 Y 174 P 187 V 175 R 188 S 176 P 189 P 177 E 190 A 178 E 191 R 179 A 192 A 180 A 193 A 181 E 194 Q 182 F 195 L 183 Q 196 G 184 A 197 I 185 E 198 E 186 F 199 L 187 V 200 L 188 S 201 S 189 T 202 L 190 P 203 D 191 E 204 D 192 L 205 L 193 A 206 L 194 A 207 A 195 Q 208 R 196 S 209 A 197 D 210 D 198 F 211 F 199 I 212 I 200 V 213 S 201 V 214 V 202 A 215 H 203 C 216 L 204 S 217 P 205 L 218 K 206 T 219 T 207 P 220 P 208 A 221 E 209 T 222 T 210 E 223 A 211 G 224 G 212 L 225 L 213 C 226 I 214 N 227 D 215 K 228 K 216 D 229 E 217 F 230 A 218 F 231 L 219 Q 232 A 220 K 233 K 221 M 234 T 222 K 235 K 223 E 236 P 224 T 237 G 225 A 238 V 226 V 239 I 227 F 240 I 228 I 241 V 229 N 242 N 230 I 243 A 231 S 244 A 232 R 245 R 233 G 246 G 234 D 247 G 235 V 248 L 236 V 249 V 237 N 250 D 238 Q 251 E 239 D 252 A 240 D 253 A 241 L 254 L 242 Y 255 A 243 Q 256 D 244 A 257 A 245 L 258 I 246 A 259 T 247 S 260 G 248 G 261 G 249 K 262 H 250 I 263 V 251 A 264 R 252 A 265 A 253 A 266 A 254 G 267 G 255 L 268 L 256 D 269 D 257 V 270 V 258 T 271 F 259 S 272 A 260 P 273 T 261 E 274 E 262 P 275 P 263 P 277 C 264 T 278 T 265 N 279 D 266 H 280 S 267 P 281 P 268 L 282 L 269 L 283 F 270 T 284 E 271 L 285 L 272 K 286 A 273 N 287 Q 274 C 288 V 275 V 289 V 276 I 290 V 277 L 291 T 278 P 292 P 279 H 293 H 280 I 294 L 281 G 295 G 282 S 296 A 283 A 297 S 284 T 298 T 285 H 299 A 286 R 300 E 287 T 301 A 288 R 302 Q 289 N 303 D 290 T 304 R 291 M 305 A 292 S 306 G 293 L 307 T 294 L 308 D 295 A 309 V 296 A 310 A 297 N 311 E 298 N 312 S 299 L 313 V 300 L 314 R 301 A 315 L 302 G 316 A 303 L 317 L 304 R 318 A 305 G 319 G 306 E 320 E 307 P 321 F 308 M 322 V 309 P 323 P 310 S 324 D 311 E 325 A 312 L 326 V 313 K 327 N 314 L 328 V 315 TER END