PFRMAT AL TARGET T0294 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=50.90 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1mx3a METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. METHOD ------------- MODEL 3 PARENT 1mx3_A L 6 M 27 M 7 P 28 K 8 L 29 V 9 V 30 F 10 A 31 V 11 L 32 T 12 L 33 R 13 G 35 R 14 R 36 I 15 D 37 P 16 C 38 A 17 T 39 E 18 V 40 G 19 E 41 R 20 M 42 V 21 P 43 A 22 I 44 L 23 L 45 A 24 K 46 R 25 D 47 A 26 V 48 A 27 A 49 D 28 T 50 C 29 V 51 E 30 A 52 V 31 F 53 E 32 C 54 D 37 D 55 E 38 A 56 P 39 Q 57 I 40 S 58 P 41 T 59 A 42 Q 60 K 43 E 61 E 44 I 62 L 45 H 63 E 46 E 64 R 47 K 65 G 48 V 66 V 49 L 67 A 50 N 68 G 51 E 69 A 52 A 70 H 53 V 71 G 54 G 72 L 55 A 73 L 56 L 74 C 57 M 75 L 58 Y 76 L 59 H 77 S 60 T 78 D 61 I 79 H 62 T 80 V 63 L 81 D 64 T 82 K 65 R 83 R 66 E 84 I 67 D 85 L 68 L 86 D 69 E 87 A 70 K 88 A 71 F 89 A 73 K 90 N 74 A 91 L 75 L 92 K 76 R 93 V 77 I 94 I 78 I 95 S 79 V 96 T 80 R 97 M 81 I 98 S 82 G 99 V 83 S 100 G 84 G 101 I 85 F 102 D 86 D 103 H 87 N 104 L 88 I 105 A 89 D 106 L 90 I 107 D 91 K 108 E 92 S 109 I 93 A 110 K 94 G 111 K 95 D 112 R 96 L 113 G 97 G 114 I 98 I 115 R 99 A 116 V 100 V 117 G 101 C 118 Y 102 N 119 T 103 V 120 P 104 P 121 D 105 A 122 V 106 A 123 L 107 S 124 T 108 V 125 D 109 E 126 T 110 E 127 T 111 T 128 A 112 A 129 E 113 D 130 L 114 S 131 A 115 T 132 V 116 L 133 S 117 C 134 L 118 H 135 L 119 I 136 L 120 L 137 T 121 N 138 T 122 L 139 C 123 Y 140 R 124 R 141 R 125 R 142 L 126 A 143 P 127 T 144 E 128 W 145 A 129 L 146 I 130 H 147 E 131 Q 148 E 132 A 149 V 133 L 150 K 134 R 151 N 135 E 152 G 136 G 153 G 137 T 154 W 138 R 155 T 139 E 160 S 140 Q 161 W 141 I 162 K 142 R 163 P 143 E 164 L 144 V 165 W 145 A 166 L 146 S 167 C 147 G 168 G 148 A 169 Y 149 A 170 G 150 R 171 L 151 I 172 T 152 R 173 Q 153 G 174 S 154 E 175 T 155 T 176 V 156 L 177 G 157 G 178 I 158 I 179 I 159 I 180 G 160 G 181 L 161 L 182 G 162 G 183 R 163 R 184 I 164 V 185 G 165 G 186 Q 166 Q 187 A 167 A 188 I 168 V 189 A 169 A 190 R 170 L 191 R 171 R 192 L 172 A 193 K 173 K 194 P 174 A 195 F 175 F 196 G 176 G 197 V 177 F 198 Q 178 N 199 R 179 V 200 F 180 L 201 L 181 F 202 Y 182 Y 203 T 183 D 204 G 184 P 205 R 185 Y 206 Q 186 L 207 P 187 S 208 R 188 D 209 P 189 G 210 E 190 V 211 E 191 E 212 A 192 R 213 A 193 A 214 E 194 L 215 F 195 G 216 Q 196 L 217 A 197 Q 218 E 198 R 219 F 199 V 220 V 200 S 221 S 201 T 222 T 202 L 223 P 203 Q 224 E 204 D 225 L 205 L 226 A 206 L 227 A 207 F 228 Q 208 H 229 S 209 S 230 D 210 D 231 F 211 C 232 I 212 V 233 V 213 T 234 V 214 L 235 A 215 H 236 C 216 C 237 S 217 G 238 L 218 L 239 T 219 N 240 P 220 E 241 A 221 H 242 T 222 N 243 E 223 H 244 G 224 H 245 L 225 L 246 C 226 I 247 N 227 N 248 K 228 D 249 D 229 F 250 F 230 T 251 F 231 V 252 Q 232 K 253 K 233 Q 254 M 234 M 255 K 235 R 256 E 236 Q 257 T 237 G 258 A 238 A 259 V 239 F 260 F 240 L 261 I 241 V 262 N 242 N 263 I 243 T 264 S 244 A 265 R 245 R 266 G 246 G 267 D 247 G 268 V 248 L 269 V 249 V 270 N 250 D 271 Q 251 E 272 D 252 K 273 D 253 A 274 L 254 L 275 Y 255 A 276 Q 256 Q 277 A 257 A 278 L 258 L 279 A 259 K 280 S 260 E 281 G 261 G 282 K 262 R 283 I 263 I 284 A 264 R 285 A 265 G 286 A 266 A 287 G 267 A 288 L 268 L 289 D 269 D 290 V 270 V 291 T 271 H 292 S 272 E 293 P 273 S 294 E 274 E 295 P 275 P 296 L 276 F 297 P 277 F 299 T 278 S 300 N 279 Q 301 H 280 G 302 P 281 P 303 L 282 L 304 L 283 K 305 T 284 D 306 L 285 A 307 K 286 P 308 N 287 N 309 C 288 L 310 V 289 I 311 I 290 C 312 L 291 T 313 P 292 P 314 H 293 H 315 I 294 A 316 G 295 A 317 S 296 W 318 A 297 Y 319 T 298 S 320 H 299 E 321 R 300 Q 322 T 301 A 323 R 302 S 324 N 303 I 325 T 304 E 326 M 305 M 327 S 306 R 328 L 307 E 329 L 308 E 330 A 309 A 331 A 310 A 332 N 311 R 333 N 312 E 334 L 313 I 335 L 314 R 336 A 315 R 337 G 316 A 338 L 317 I 339 R 318 T 340 G 319 G 341 E 320 R 342 P 321 I 343 M 322 P 344 P 323 D 345 S 324 S 346 E 325 L 347 L 326 K 348 K 327 N 349 L 328 C 350 TER END