PFRMAT AL TARGET T0297 AUTHOR gtg REMARK Global Trace Graph (GTG) v2 used to find PDB templates REMARK SCORES 3396|9804|1795 METHOD GTG Deep-Search for transitive alignment of distantly-related proteins METHOD using a weighted Consistency-Motif score. Publication pending. METHOD The concepts of consistency and transitive alignment are described in METHOD detail in the publication: METHOD Heger A, Lappe M, Holm L (2003) Accurate detection of very sparse METHOD sequence motifs. RECOMB 2003: Proceedings of the 7th Annual International METHOD Conference on Research in Computational Biology, Eds Miller et al. METHOD Association for Computing Machinery, New York, NY. pp. 139-147. METHOD ------------- MODEL 5 PARENT 1deo_A P 32 T 1 N 33 T 2 I 34 V 3 L 35 Y 4 F 36 L 5 I 37 A 6 G 38 G 7 D 39 D 8 S 40 S 9 I 41 T 10 V 42 M 11 E 43 A 12 Y 44 K 13 Y 45 N 14 P 46 G 15 L 47 G 16 Q 48 Y 26 E 49 L 27 L 50 S 29 F 51 Y 30 G 52 L 31 T 53 S 32 K 55 A 33 T 56 T 34 I 57 V 35 V 58 V 36 N 59 N 37 R 60 D 38 G 61 A 39 I 62 V 40 R 63 A 41 G 64 G 42 Y 65 R 43 Q 66 S 44 T 67 A 45 G 68 R 46 L 69 S 47 L 70 Y 48 L 71 T 49 E 72 R 50 N 73 E 51 L 74 G 52 D 75 R 53 A 76 F 54 H 77 A 58 L 78 D 59 Y 79 V 60 G 80 V 61 G 81 T 62 A 82 A 63 V 83 G 64 D 84 D 65 K 85 Y 66 I 86 V 67 F 87 I 68 L 88 V 69 L 89 E 70 I 90 F 71 G 91 G 72 T 92 H 73 N 93 N 74 D 94 D 75 I 95 G 76 G 96 G 77 K 97 S 78 D 98 L 79 V 99 E 105 P 100 T 106 V 101 I 107 N 102 L 108 E 103 T 109 A 104 F 110 L 105 P 111 N 106 A 112 N 107 Y 113 L 108 L 114 E 109 E 115 A 110 N 116 I 111 A 117 I 112 A 118 Q 113 K 119 S 114 L 120 V 115 F 121 A 116 T 122 R 117 A 123 D 118 K 124 Y 119 G 125 P 120 A 126 L 121 K 127 I 124 V 128 K 125 I 129 L 126 L 130 L 127 S 131 S 128 S 132 I 129 Q 133 L 130 T 134 P 131 P 135 V 132 N 136 N 133 N 137 E 134 P 138 R 135 W 139 E 136 E 140 Y 143 T 141 I 144 G 142 R 145 T 143 S 146 F 144 N 147 V 145 E 148 N 146 K 149 S 147 I 150 P 148 Q 151 T 149 N 152 R 150 W 153 F 151 N 154 V 152 Q 155 E 153 A 156 Y 154 Y 157 A 155 Q 158 E 156 E 159 L 157 L 160 A 158 A 161 A 159 S 162 E 160 Y 164 V 161 M 165 A 162 Q 166 G 163 V 167 V 164 E 168 E 165 F 169 Y 166 V 170 V 167 P 171 D 168 V 172 H 169 F 173 W 170 D 174 S 171 C 175 Y 172 L 176 V 173 T 177 D 174 D 178 S 175 Q 179 I 176 A 180 Y 177 G 181 A 183 Q 182 T 184 L 183 V 185 K 184 N 186 K 185 S 187 E 186 Y 188 Y 187 F 189 T 188 P 190 T 189 I 191 D 190 D 192 G 191 H 193 L 192 T 194 H 193 H 195 L 194 T 196 S 195 S 197 I 196 P 198 A 197 A 199 G 198 G 200 Y 199 A 201 Q 200 E 202 A 201 V 203 L 202 V 204 S 203 A 205 K 204 E 206 S 205 A 207 L 206 F 208 K 207 L 209 D 208 K 210 Y 209 A 211 TER END