PFRMAT AL
TARGET T0308 ARL6, Homo sapiens, 165 res
AUTHOR SAM-T99
METHOD This pairwise alignment was produced using the SAM-T99 method
METHOD 
METHOD  ------------- Citations (SAM, SAM-T99, HMMs) -----------------
METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
METHOD   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
METHOD   remote protein homologies, Bioinformatics 14(10):846-856, 1999.
METHOD A. Krogh et al., Hidden Markov models in computational biology:
METHOD   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
METHOD -------------
MODEL 2
PARENT 1yznA
E 1    L 8
V 2    F 9
H 3    K 10
V 4    L 11
L 5    L 12
C 6    L 13
L 7    I 14
G 8    G 15
L 9    N 16
D 10    S 17
N 11    G 18
S 12    V 19
G 13    G 20
K 14    K 21
T 15    S 22
T 16    C 23
I 17    L 24
I 18    L 25
N 19    L 26
K 20    R 27
L 21    F 28
K 22    S 29
P 23    D 30
S 24    D 31
N 25    T 32
A 26    Y 33
S 28    T 34
Q 29    N 35
N 30    D 36
I 31    Y 37
L 32    I 38
P 33    S 39
T 34    T 40
I 35    I 41
G 36    G 42
F 37    V 43
S 38    D 44
I 39    F 45
E 40    V 50
K 41    E 51
F 42    L 52
K 43    D 53
S 44    G 54
S 45    K 55
S 46    T 56
L 47    V 57
S 48    K 58
F 49    L 59
T 50    Q 60
V 51    I 61
F 52    W 62
D 53    D 63
M 54    T 64
S 55    A 65
G 56    G 66
Q 57    Q 67
G 58    E 68
R 59    R 69
Y 60    F 70
R 61    R 71
N 62    T 72
L 63    I 73
W 64    T 74
E 65    S 75
H 66    S 76
Y 67    Y 77
Y 68    Y 78
K 69    R 79
E 70    G 80
G 71    S 81
Q 72    H 82
A 73    G 83
I 74    I 84
I 75    I 85
F 76    I 86
V 77    V 87
I 78    Y 88
D 79    D 89
S 80    V 90
S 81    T 91
D 82    D 92
R 83    Q 93
L 84    E 94
R 85    S 95
M 86    F 96
V 87    N 97
V 88    G 98
A 89    V 99
K 90    K 100
E 91    M 101
E 92    W 102
L 93    L 103
D 94    Q 104
T 95    E 105
L 96    I 106
L 97    D 107
N 98    R 108
H 99    Y 109
P 100    A 110
D 101    T 111
R 105    S 112
R 106    T 113
I 107    V 114
P 108    L 115
I 109    K 116
L 110    L 117
F 111    L 118
F 112    V 119
A 113    G 120
N 114    N 121
K 115    K 122
M 116    C 123
D 117    D 124
L 118    L 125
R 119    K 126
D 120    D 127
A 121    K 128
V 122    R 129
K 126    V 130
V 127    V 131
S 128    E 132
Q 129    Y 133
L 130    D 134
L 131    V 135
C 132    A 136
L 133    K 137
E 134    E 138
N 135    F 139
I 136    A 140
K 137    D 141
D 138    A 142
K 139    N 143
P 140    K 144
W 141    M 145
H 142    P 146
I 143    F 147
C 144    L 148
A 145    E 149
S 146    T 150
D 147    S 151
A 148    A 152
I 149    L 153
K 150    D 154
G 151    S 155
E 152    T 156
G 153    N 157
L 154    V 158
Q 155    E 159
E 156    D 160
G 157    A 161
V 158    F 162
D 159    L 163
W 160    T 164
L 161    M 165
Q 162    A 166
D 163    R 167
Q 164    Q 168
I 165    I 169
TER
END