PFRMAT AL
TARGET T0311
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=8.25 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs2awia
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
METHOD -------------
MODEL  2
PARENT 2awi_A
P   7     F     2 
R   8     K     3 
P   9     I     4 
G  10     G     5 
D  11     S     6 
I  12     V     7 
I  13     L     8 
Q  14     K     9 
E  15     Q    10 
S  16     I    11 
L  17     R    12 
D  18     Q    13 
E  19     E    14 
L  20     L    15 
N  21     N    16 
V  22     Y    17 
S  23     H    18 
L  24     Q    19 
R  25     I    20 
E  26     D    21 
F  27     L    22 
A  28     Y    23 
R  29     S    24 
E  32     G    25 
I  33     I    26 
A  34     S    28 
P  35     K    29 
S  36     S    30 
T  37     V    31 
A  38     Y    32 
S  39     I    33 
R  40     K    34 
L  41     V    35 
L  42     E    36 
T  43     A    37 
G  44     D    38 
K  45     S    39 
A  46     R    40 
A  47     P    41 
L  48     I    42 
T  49     S    43 
P  50     V    44 
E  51     E    45 
M  52     E    46 
A  53     L    47 
I  54     S    48 
K  55     K    49 
L  56     F    50 
S  57     S    51 
V  58     E    52 
V  59     R    53 
I  60     L    54 
G  61     G    55 
S  62     V    56 
S  63     N    57 
P  64     F    58 
Q  65     F    59 
M  66     E    60 
W  67     I    61 
L  68     L    62 
N  69     N    63 
L  70     R    64 
Q  71     A    65 
N  72     G    66 
A  73     N    68 
W  74     S    71 
S  75     V    72 
L  76     N    73 
A  77     E    74 
E  78     T    75 
A  79     G    76 
E  80     K    77 
K  81     E    78 
T  82     K    79 
V  83     L    80 
D  84     L    81 
V  85     I    82 
S  86     S    83 
R  87     K    84 
L  88     I    85 
R  89     F    86 
R  90     T    87 
L  91     N    88 
V  92     P    89 
T  93     D    90 
Q  94     L    91 
S  95     F    92 
T  96     D    93 
P  97     K    94 
TER
END