PFRMAT AL
TARGET T0311
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=6.32 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: rep
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
METHOD -------------
MODEL  3
PARENT 1lmb_3
M   1     E    10 
K   2     Q    11 
M   3     L    12 
A   4     E    13 
N   5     D    14 
H   6     A    15 
P   7     R    16 
R   8     R    17 
P   9     L    18 
G  10     K    19 
D  11     A    20 
I  12     I    21 
I  13     Y    22 
Q  14     E    23 
E  15     K    24 
S  16     K    25 
L  17     K    26 
D  18     N    27 
E  19     E    28 
L  20     L    29 
N  21     G    30 
V  22     L    31 
S  23     S    32 
L  24     Q    33 
R  25     E    34 
E  26     S    35 
F  27     V    36 
A  28     A    37 
R  29     D    38 
A  30     K    39 
M  31     M    40 
E  32     G    41 
I  33     M    42 
A  34     G    43 
P  35     Q    44 
S  36     S    45 
T  37     G    46 
A  38     V    47 
S  39     G    48 
R  40     A    49 
L  41     L    50 
L  42     F    51 
T  43     N    52 
G  44     G    53 
K  45     I    54 
A  46     N    55 
A  47     A    56 
L  48     L    57 
T  49     N    58 
P  50     A    59 
E  51     Y    60 
M  52     N    61 
A  53     A    62 
I  54     A    63 
K  55     L    64 
L  56     L    65 
S  57     A    66 
V  58     K    67 
V  59     I    68 
I  60     L    69 
G  61     K    70 
S  62     V    71 
S  63     S    72 
P  64     V    73 
Q  65     E    74 
M  66     E    75 
W  67     F    76 
Q  71     S    77 
N  72     P    78 
A  73     S    79 
W  74     I    80 
S  75     A    81 
L  76     R    82 
A  77     E    83 
E  78     I    84 
A  79     Y    85 
E  80     E    86 
K  81     M    87 
T  82     Y    88 
V  83     E    89 
D  84     A    90 
V  85     V    91 
S  86     S    92 
TER
END