PFRMAT TS TARGET T0311 AUTHOR SAM_T06_server REMARK 6 REMARK 6 T0311 model 2 Thu Jun 1 13:31:52 2006 METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and METHOD the SAM-T02 method in CASP5. METHOD METHOD We start with a fully automated method: METHOD METHOD Use the SAM-T2K and SAM-T04 methods for finding homologs of the METHOD target and aligning them. METHOD METHOD Make local structure predictions using neural nets and the METHOD multiple alignments. Different neural nets are used for the METHOD SAM-T2K alignments and the SAM-T04 alignments. METHOD We currently use 8 local-structure alphabets: METHOD DSSP METHOD STRIDE METHOD STR2 an extended version of DSSP that splits the beta strands METHOD into multiple classes (parallel/antiparallel/mixed, METHOD edge/center) METHOD ALPHA an discretization of the alpha torsion angle: METHOD CA(i-i), CA(i), CA(i+1), CA(i+2) METHOD BYS a discretization of Ramachandran plots, due to Bystroff METHOD CB_burial_14_7 a 7-state discretization of the number of C_beta METHOD atoms in a 14 Angstrom radius sphere around the C_beta. METHOD near-backbone-11 an 11-state discretization of the number of METHOD residues (represented by near-backbone points) in a METHOD 9.65 Angstrom radius sphere around the sidechain proxy METHOD spot for the residue. METHOD DSSP_EHL2 CASP's collapse of the DSSP alphabet METHOD DSSP_EHL2 is not predicted directly by a METHOD neural net, but is computed as a weighted METHOD average of the other backbone alphabet predictions. METHOD METHOD We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure) METHOD and use them to score a template library of 6400 (t04) or 9900 (t2k) templates METHOD We also used a single-track HMM to score not just the template METHOD library, but a non-redundant copy of the entire PDB. METHOD METHOD We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and METHOD AA, str2, near-backbone-11) for finding and aligning more remote METHOD homologs. METHOD METHOD One-track HMMs built from the template library multiple alignments METHOD were used to score the target sequence (for early targets, only METHOD t2k template library was searched this way). METHOD METHOD All the logs of e-values were combined in a weighted average (with METHOD rather arbitrary weights, since we did not have time to METHOD optimize them), and the best templates ranked. Ranking was METHOD separate for predictions from the t2k and t04 multiple alignments. METHOD METHOD Alignments of the target to the top templates were made using METHOD several different alignment methods (mainly using the SAM hmmscore METHOD program, but a few alignments were made with Bob Edgar's MUSCLE METHOD profile-profile aligner). METHOD METHOD Generate fragments (short 9-residue alignments for each position) METHOD using SAM's "fragfinder" program and the 3-track HMM. METHOD METHOD Then the "undertaker" program (named because it optimizes burial) METHOD is used to try to combine the alignments and the fragments into METHOD a consistent 3D model. No single alignment or parent template METHOD was used, though in many cases one had much more influence than METHOD the others. The alignment scores were not passed to undertaker, METHOD but were used only to pick the set of alignments and fragments METHOD that undertaker would see. Helix and strand constraints METHOD generated from the secondary-structure predictions are passed to METHOD undertaker to use in the cost function. METHOD METHOD One important change in this server over previous methods is that METHOD sheet constraints are extracted from the top few alignments and METHOD passed to undertaker. METHOD ------------- MODEL 2 PARENT N/A ATOM 2 N GLY 10 -0.467 -0.051 -1.581 1.00 0.00 ATOM 3 CA GLY 10 0.678 0.547 -2.287 1.00 0.00 ATOM 4 O GLY 10 1.004 2.698 -3.273 1.00 0.00 ATOM 5 C GLY 10 0.306 1.683 -3.227 1.00 0.00 ATOM 6 N ASP 11 -0.811 1.529 -3.939 1.00 0.00 ATOM 7 CA ASP 11 -1.311 2.605 -4.795 1.00 0.00 ATOM 8 CB ASP 11 -2.598 2.175 -5.501 1.00 0.00 ATOM 9 CG ASP 11 -2.351 1.161 -6.601 1.00 0.00 ATOM 10 OD1 ASP 11 -1.175 0.970 -6.977 1.00 0.00 ATOM 11 OD2 ASP 11 -3.330 0.559 -7.085 1.00 0.00 ATOM 12 O ASP 11 -1.294 4.986 -4.396 1.00 0.00 ATOM 13 C ASP 11 -1.610 3.853 -3.977 1.00 0.00 ATOM 14 N ILE 12 -2.219 3.644 -2.811 1.00 0.00 ATOM 15 CA ILE 12 -2.594 4.746 -1.952 1.00 0.00 ATOM 16 CB ILE 12 -3.445 4.267 -0.760 1.00 0.00 ATOM 17 CG1 ILE 12 -4.762 3.665 -1.253 1.00 0.00 ATOM 18 CG2 ILE 12 -3.763 5.430 0.168 1.00 0.00 ATOM 19 CD1 ILE 12 -5.623 4.636 -2.032 1.00 0.00 ATOM 20 O ILE 12 -1.261 6.648 -1.334 1.00 0.00 ATOM 21 C ILE 12 -1.342 5.433 -1.395 1.00 0.00 ATOM 22 N ILE 13 -0.332 4.654 -1.020 1.00 0.00 ATOM 23 CA ILE 13 0.918 5.246 -0.521 1.00 0.00 ATOM 24 CB ILE 13 1.921 4.162 -0.084 1.00 0.00 ATOM 25 CG1 ILE 13 1.404 3.426 1.155 1.00 0.00 ATOM 26 CG2 ILE 13 3.266 4.786 0.253 1.00 0.00 ATOM 27 CD1 ILE 13 2.185 2.175 1.492 1.00 0.00 ATOM 28 O ILE 13 1.985 7.205 -1.368 1.00 0.00 ATOM 29 C ILE 13 1.571 6.082 -1.608 1.00 0.00 ATOM 30 N GLN 14 1.680 5.521 -2.808 1.00 0.00 ATOM 31 CA GLN 14 2.304 6.272 -3.897 1.00 0.00 ATOM 32 CB GLN 14 2.273 5.460 -5.195 1.00 0.00 ATOM 33 CG GLN 14 3.004 6.117 -6.355 1.00 0.00 ATOM 34 CD GLN 14 4.491 6.268 -6.097 1.00 0.00 ATOM 35 OE1 GLN 14 5.149 5.333 -5.640 1.00 0.00 ATOM 36 NE2 GLN 14 5.022 7.448 -6.391 1.00 0.00 ATOM 37 O GLN 14 2.147 8.645 -4.345 1.00 0.00 ATOM 38 C GLN 14 1.557 7.596 -4.135 1.00 0.00 ATOM 39 N GLU 15 0.238 7.552 -4.138 1.00 0.00 ATOM 40 CA GLU 15 -0.583 8.742 -4.371 1.00 0.00 ATOM 41 CB GLU 15 -2.068 8.377 -4.363 1.00 0.00 ATOM 42 CG GLU 15 -2.997 9.548 -4.644 1.00 0.00 ATOM 43 CD GLU 15 -4.458 9.142 -4.662 1.00 0.00 ATOM 44 OE1 GLU 15 -4.743 7.942 -4.469 1.00 0.00 ATOM 45 OE2 GLU 15 -5.317 10.025 -4.871 1.00 0.00 ATOM 46 O GLU 15 -0.109 10.957 -3.593 1.00 0.00 ATOM 47 C GLU 15 -0.344 9.790 -3.286 1.00 0.00 ATOM 48 N SER 16 -0.381 9.369 -2.025 1.00 0.00 ATOM 49 CA SER 16 -0.193 10.298 -0.930 1.00 0.00 ATOM 50 CB SER 16 -0.454 9.603 0.410 1.00 0.00 ATOM 51 OG SER 16 -1.815 9.232 0.535 1.00 0.00 ATOM 52 O SER 16 1.443 12.046 -0.744 1.00 0.00 ATOM 53 C SER 16 1.231 10.842 -0.917 1.00 0.00 ATOM 54 N LEU 17 2.210 9.960 -1.082 1.00 0.00 ATOM 55 CA LEU 17 3.616 10.425 -1.102 1.00 0.00 ATOM 56 CB LEU 17 4.566 9.248 -1.330 1.00 0.00 ATOM 57 CG LEU 17 4.701 8.253 -0.175 1.00 0.00 ATOM 58 CD1 LEU 17 5.518 7.043 -0.600 1.00 0.00 ATOM 59 CD2 LEU 17 5.393 8.899 1.014 1.00 0.00 ATOM 60 O LEU 17 4.575 12.459 -2.021 1.00 0.00 ATOM 61 C LEU 17 3.884 11.451 -2.215 1.00 0.00 ATOM 62 N ASP 18 3.387 11.163 -3.411 1.00 0.00 ATOM 63 CA ASP 18 3.605 12.019 -4.574 1.00 0.00 ATOM 64 CB ASP 18 3.095 11.337 -5.845 1.00 0.00 ATOM 65 CG ASP 18 3.984 10.193 -6.291 1.00 0.00 ATOM 66 OD1 ASP 18 5.114 10.082 -5.769 1.00 0.00 ATOM 67 OD2 ASP 18 3.550 9.407 -7.160 1.00 0.00 ATOM 68 O ASP 18 3.410 14.396 -4.709 1.00 0.00 ATOM 69 C ASP 18 2.861 13.344 -4.397 1.00 0.00 ATOM 70 N GLU 19 1.641 13.300 -3.858 1.00 0.00 ATOM 71 CA GLU 19 0.882 14.527 -3.499 1.00 0.00 ATOM 72 CB GLU 19 -0.430 14.160 -2.803 1.00 0.00 ATOM 73 CG GLU 19 -1.464 13.528 -3.720 1.00 0.00 ATOM 74 CD GLU 19 -2.700 13.067 -2.973 1.00 0.00 ATOM 75 OE1 GLU 19 -2.717 13.173 -1.730 1.00 0.00 ATOM 76 OE2 GLU 19 -3.652 12.598 -3.634 1.00 0.00 ATOM 77 O GLU 19 1.707 16.647 -2.721 1.00 0.00 ATOM 78 C GLU 19 1.678 15.418 -2.557 1.00 0.00 ATOM 79 N LEU 20 2.373 14.784 -1.621 1.00 0.00 ATOM 80 CA LEU 20 3.158 15.489 -0.609 1.00 0.00 ATOM 81 CB LEU 20 3.358 14.607 0.626 1.00 0.00 ATOM 82 CG LEU 20 2.090 14.210 1.387 1.00 0.00 ATOM 83 CD1 LEU 20 2.423 13.251 2.519 1.00 0.00 ATOM 84 CD2 LEU 20 1.416 15.436 1.983 1.00 0.00 ATOM 85 O LEU 20 5.276 16.562 -0.380 1.00 0.00 ATOM 86 C LEU 20 4.541 15.890 -1.097 1.00 0.00 ATOM 87 N ASN 21 4.890 15.520 -2.324 1.00 0.00 ATOM 88 CA ASN 21 6.154 15.942 -2.926 1.00 0.00 ATOM 89 CB ASN 21 6.343 17.453 -2.771 1.00 0.00 ATOM 90 CG ASN 21 5.380 18.250 -3.628 1.00 0.00 ATOM 91 ND2 ASN 21 5.095 19.478 -3.209 1.00 0.00 ATOM 92 OD1 ASN 21 4.899 17.768 -4.654 1.00 0.00 ATOM 93 O ASN 21 8.467 15.882 -2.289 1.00 0.00 ATOM 94 C ASN 21 7.383 15.291 -2.318 1.00 0.00 ATOM 95 N VAL 22 7.209 14.067 -1.845 1.00 0.00 ATOM 96 CA VAL 22 8.255 13.297 -1.187 1.00 0.00 ATOM 97 CB VAL 22 7.744 12.643 0.109 1.00 0.00 ATOM 98 CG1 VAL 22 8.839 11.806 0.752 1.00 0.00 ATOM 99 CG2 VAL 22 7.305 13.705 1.106 1.00 0.00 ATOM 100 O VAL 22 7.884 11.504 -2.697 1.00 0.00 ATOM 101 C VAL 22 8.713 12.213 -2.148 1.00 0.00 ATOM 102 N SER 23 10.019 12.087 -2.357 1.00 0.00 ATOM 103 CA SER 23 10.517 10.960 -3.141 1.00 0.00 ATOM 104 CB SER 23 11.950 11.223 -3.607 1.00 0.00 ATOM 105 OG SER 23 12.846 11.253 -2.510 1.00 0.00 ATOM 106 O SER 23 10.442 9.696 -1.092 1.00 0.00 ATOM 107 C SER 23 10.514 9.670 -2.317 1.00 0.00 ATOM 108 N LEU 24 10.622 8.541 -3.003 1.00 0.00 ATOM 109 CA LEU 24 10.769 7.261 -2.333 1.00 0.00 ATOM 110 CB LEU 24 10.965 6.139 -3.356 1.00 0.00 ATOM 111 CG LEU 24 9.753 5.791 -4.220 1.00 0.00 ATOM 112 CD1 LEU 24 10.135 4.797 -5.307 1.00 0.00 ATOM 113 CD2 LEU 24 8.650 5.170 -3.375 1.00 0.00 ATOM 114 O LEU 24 11.898 6.768 -0.271 1.00 0.00 ATOM 115 C LEU 24 11.972 7.271 -1.401 1.00 0.00 ATOM 116 N ARG 25 13.088 7.831 -1.876 1.00 0.00 ATOM 117 CA ARG 25 14.323 7.841 -1.073 1.00 0.00 ATOM 118 CB ARG 25 15.485 8.418 -1.884 1.00 0.00 ATOM 119 CG ARG 25 15.973 7.510 -3.001 1.00 0.00 ATOM 120 CD ARG 25 17.072 8.175 -3.813 1.00 0.00 ATOM 121 NE ARG 25 17.549 7.316 -4.895 1.00 0.00 ATOM 122 CZ ARG 25 18.450 7.686 -5.800 1.00 0.00 ATOM 123 NH1 ARG 25 18.823 6.838 -6.747 1.00 0.00 ATOM 124 NH2 ARG 25 18.974 8.903 -5.755 1.00 0.00 ATOM 125 O ARG 25 14.527 8.309 1.273 1.00 0.00 ATOM 126 C ARG 25 14.127 8.697 0.178 1.00 0.00 ATOM 127 N GLU 26 13.490 9.853 0.019 1.00 0.00 ATOM 128 CA GLU 26 13.195 10.733 1.146 1.00 0.00 ATOM 129 CB GLU 26 12.485 11.999 0.664 1.00 0.00 ATOM 130 CG GLU 26 12.179 12.997 1.769 1.00 0.00 ATOM 131 CD GLU 26 11.507 14.253 1.251 1.00 0.00 ATOM 132 OE1 GLU 26 11.293 14.349 0.025 1.00 0.00 ATOM 133 OE2 GLU 26 11.195 15.141 2.072 1.00 0.00 ATOM 134 O GLU 26 12.557 10.013 3.358 1.00 0.00 ATOM 135 C GLU 26 12.287 10.024 2.156 1.00 0.00 ATOM 136 N PHE 27 11.211 9.404 1.679 1.00 0.00 ATOM 137 CA PHE 27 10.324 8.689 2.574 1.00 0.00 ATOM 138 CB PHE 27 9.175 8.050 1.791 1.00 0.00 ATOM 139 CG PHE 27 8.229 7.254 2.644 1.00 0.00 ATOM 140 CD1 PHE 27 7.254 7.886 3.397 1.00 0.00 ATOM 141 CD2 PHE 27 8.314 5.874 2.695 1.00 0.00 ATOM 142 CE1 PHE 27 6.384 7.155 4.183 1.00 0.00 ATOM 143 CE2 PHE 27 7.443 5.142 3.480 1.00 0.00 ATOM 144 CZ PHE 27 6.483 5.777 4.223 1.00 0.00 ATOM 145 O PHE 27 10.909 7.406 4.537 1.00 0.00 ATOM 146 C PHE 27 11.061 7.582 3.317 1.00 0.00 ATOM 147 N ALA 28 11.867 6.827 2.576 1.00 0.00 ATOM 148 CA ALA 28 12.693 5.762 3.169 1.00 0.00 ATOM 149 CB ALA 28 13.604 5.149 2.117 1.00 0.00 ATOM 150 O ALA 28 13.640 5.734 5.391 1.00 0.00 ATOM 151 C ALA 28 13.568 6.304 4.297 1.00 0.00 ATOM 152 N ARG 29 14.227 7.424 4.037 1.00 0.00 ATOM 153 CA ARG 29 15.121 8.041 5.009 1.00 0.00 ATOM 154 CB ARG 29 15.808 9.267 4.403 1.00 0.00 ATOM 155 CG ARG 29 16.842 8.936 3.339 1.00 0.00 ATOM 156 CD ARG 29 17.450 10.199 2.748 1.00 0.00 ATOM 157 NE ARG 29 18.412 9.899 1.690 1.00 0.00 ATOM 158 CZ ARG 29 19.045 10.822 0.973 1.00 0.00 ATOM 159 NH1 ARG 29 19.902 10.456 0.030 1.00 0.00 ATOM 160 NH2 ARG 29 18.816 12.108 1.199 1.00 0.00 ATOM 161 O ARG 29 14.688 8.143 7.375 1.00 0.00 ATOM 162 C ARG 29 14.331 8.484 6.245 1.00 0.00 ATOM 163 N ALA 30 13.226 9.191 6.027 1.00 0.00 ATOM 164 CA ALA 30 12.409 9.690 7.137 1.00 0.00 ATOM 165 CB ALA 30 11.237 10.501 6.610 1.00 0.00 ATOM 166 O ALA 30 11.683 8.716 9.203 1.00 0.00 ATOM 167 C ALA 30 11.834 8.552 7.999 1.00 0.00 ATOM 168 N MET 31 11.474 7.429 7.375 1.00 0.00 ATOM 169 CA MET 31 10.850 6.299 8.082 1.00 0.00 ATOM 170 CB MET 31 9.881 5.558 7.158 1.00 0.00 ATOM 171 CG MET 31 10.557 4.826 6.009 1.00 0.00 ATOM 172 SD MET 31 9.398 3.853 5.028 1.00 0.00 ATOM 173 CE MET 31 9.050 2.503 6.154 1.00 0.00 ATOM 174 O MET 31 11.474 4.317 9.259 1.00 0.00 ATOM 175 C MET 31 11.860 5.264 8.587 1.00 0.00 ATOM 176 N GLU 32 13.138 5.417 8.244 1.00 0.00 ATOM 177 CA GLU 32 14.168 4.460 8.618 1.00 0.00 ATOM 178 CB GLU 32 14.121 4.179 10.121 1.00 0.00 ATOM 179 CG GLU 32 14.298 5.414 10.989 1.00 0.00 ATOM 180 CD GLU 32 14.249 5.097 12.471 1.00 0.00 ATOM 181 OE1 GLU 32 15.196 4.455 12.973 1.00 0.00 ATOM 182 OE2 GLU 32 13.264 5.489 13.131 1.00 0.00 ATOM 183 O GLU 32 14.299 2.082 8.513 1.00 0.00 ATOM 184 C GLU 32 14.030 3.131 7.917 1.00 0.00 ATOM 185 N ILE 33 13.627 3.179 6.648 1.00 0.00 ATOM 186 CA ILE 33 13.420 1.973 5.848 1.00 0.00 ATOM 187 CB ILE 33 11.946 1.818 5.430 1.00 0.00 ATOM 188 CG1 ILE 33 11.508 3.008 4.572 1.00 0.00 ATOM 189 CG2 ILE 33 11.048 1.752 6.656 1.00 0.00 ATOM 190 CD1 ILE 33 10.140 2.839 3.948 1.00 0.00 ATOM 191 O ILE 33 14.851 3.097 4.305 1.00 0.00 ATOM 192 C ILE 33 14.277 2.053 4.589 1.00 0.00 ATOM 193 N ALA 34 14.422 0.929 3.892 1.00 0.00 ATOM 194 CA ALA 34 15.161 0.910 2.620 1.00 0.00 ATOM 195 CB ALA 34 15.561 -0.513 2.261 1.00 0.00 ATOM 196 O ALA 34 13.097 1.194 1.445 1.00 0.00 ATOM 197 C ALA 34 14.290 1.470 1.503 1.00 0.00 ATOM 198 N PRO 35 14.879 2.241 0.590 1.00 0.00 ATOM 199 CA PRO 35 14.127 2.708 -0.583 1.00 0.00 ATOM 200 CB PRO 35 15.149 3.526 -1.376 1.00 0.00 ATOM 201 CG PRO 35 16.104 4.029 -0.346 1.00 0.00 ATOM 202 CD PRO 35 16.271 2.915 0.648 1.00 0.00 ATOM 203 O PRO 35 12.459 1.554 -1.856 1.00 0.00 ATOM 204 C PRO 35 13.600 1.526 -1.397 1.00 0.00 ATOM 205 N SER 36 14.386 0.463 -1.552 1.00 0.00 ATOM 206 CA SER 36 13.887 -0.705 -2.285 1.00 0.00 ATOM 207 CB SER 36 14.922 -1.832 -2.267 1.00 0.00 ATOM 208 OG SER 36 16.086 -1.466 -2.989 1.00 0.00 ATOM 209 O SER 36 11.679 -1.660 -2.358 1.00 0.00 ATOM 210 C SER 36 12.593 -1.238 -1.659 1.00 0.00 ATOM 211 N THR 37 12.518 -1.184 -0.340 1.00 0.00 ATOM 212 CA THR 37 11.358 -1.668 0.419 1.00 0.00 ATOM 213 CB THR 37 11.655 -1.727 1.928 1.00 0.00 ATOM 214 CG2 THR 37 10.427 -2.189 2.696 1.00 0.00 ATOM 215 OG1 THR 37 12.728 -2.648 2.171 1.00 0.00 ATOM 216 O THR 37 9.058 -1.216 -0.076 1.00 0.00 ATOM 217 C THR 37 10.161 -0.741 0.210 1.00 0.00 ATOM 218 N ALA 38 10.358 0.568 0.312 1.00 0.00 ATOM 219 CA ALA 38 9.282 1.519 -0.044 1.00 0.00 ATOM 220 CB ALA 38 9.808 2.946 -0.021 1.00 0.00 ATOM 221 O ALA 38 7.502 1.185 -1.653 1.00 0.00 ATOM 222 C ALA 38 8.719 1.255 -1.439 1.00 0.00 ATOM 223 N SER 39 9.614 1.098 -2.405 1.00 0.00 ATOM 224 CA SER 39 9.201 0.821 -3.765 1.00 0.00 ATOM 225 CB SER 39 10.419 0.698 -4.681 1.00 0.00 ATOM 226 OG SER 39 11.093 1.940 -4.803 1.00 0.00 ATOM 227 O SER 39 7.361 -0.545 -4.546 1.00 0.00 ATOM 228 C SER 39 8.405 -0.490 -3.873 1.00 0.00 ATOM 229 N ARG 40 8.907 -1.549 -3.236 1.00 0.00 ATOM 230 CA ARG 40 8.200 -2.826 -3.172 1.00 0.00 ATOM 231 CB ARG 40 8.989 -3.833 -2.332 1.00 0.00 ATOM 232 CG ARG 40 10.265 -4.328 -2.993 1.00 0.00 ATOM 233 CD ARG 40 11.020 -5.286 -2.086 1.00 0.00 ATOM 234 NE ARG 40 12.274 -5.734 -2.687 1.00 0.00 ATOM 235 CZ ARG 40 13.149 -6.530 -2.082 1.00 0.00 ATOM 236 NH1 ARG 40 14.265 -6.884 -2.707 1.00 0.00 ATOM 237 NH2 ARG 40 12.907 -6.971 -0.855 1.00 0.00 ATOM 238 O ARG 40 5.843 -3.276 -3.053 1.00 0.00 ATOM 239 C ARG 40 6.805 -2.697 -2.541 1.00 0.00 ATOM 240 N LEU 41 6.708 -1.970 -1.438 1.00 0.00 ATOM 241 CA LEU 41 5.418 -1.736 -0.780 1.00 0.00 ATOM 242 CB LEU 41 5.603 -0.880 0.475 1.00 0.00 ATOM 243 CG LEU 41 6.325 -1.546 1.649 1.00 0.00 ATOM 244 CD1 LEU 41 6.600 -0.535 2.752 1.00 0.00 ATOM 245 CD2 LEU 41 5.481 -2.669 2.232 1.00 0.00 ATOM 246 O LEU 41 3.278 -1.401 -1.839 1.00 0.00 ATOM 247 C LEU 41 4.464 -1.008 -1.732 1.00 0.00 ATOM 248 N LEU 42 4.972 -0.012 -2.452 1.00 0.00 ATOM 249 CA LEU 42 4.142 0.699 -3.406 1.00 0.00 ATOM 250 CB LEU 42 4.941 1.813 -4.087 1.00 0.00 ATOM 251 CG LEU 42 5.347 2.994 -3.203 1.00 0.00 ATOM 252 CD1 LEU 42 6.272 3.937 -3.957 1.00 0.00 ATOM 253 CD2 LEU 42 4.122 3.781 -2.762 1.00 0.00 ATOM 254 O LEU 42 2.533 0.077 -5.073 1.00 0.00 ATOM 255 C LEU 42 3.596 -0.213 -4.516 1.00 0.00 ATOM 256 N THR 43 4.306 -1.313 -4.807 1.00 0.00 ATOM 257 CA THR 43 3.855 -2.316 -5.784 1.00 0.00 ATOM 258 CB THR 43 5.041 -2.927 -6.554 1.00 0.00 ATOM 259 CG2 THR 43 5.811 -1.844 -7.294 1.00 0.00 ATOM 260 OG1 THR 43 5.925 -3.579 -5.635 1.00 0.00 ATOM 261 O THR 43 2.687 -4.389 -5.847 1.00 0.00 ATOM 262 C THR 43 3.110 -3.477 -5.146 1.00 0.00 ATOM 263 N GLY 44 2.913 -3.458 -3.833 1.00 0.00 ATOM 264 CA GLY 44 2.229 -4.574 -3.183 1.00 0.00 ATOM 265 O GLY 44 2.471 -6.901 -2.831 1.00 0.00 ATOM 266 C GLY 44 3.039 -5.836 -3.028 1.00 0.00 ATOM 267 N LYS 45 4.354 -5.733 -3.122 1.00 0.00 ATOM 268 CA LYS 45 5.199 -6.921 -2.948 1.00 0.00 ATOM 269 CB LYS 45 6.585 -6.687 -3.551 1.00 0.00 ATOM 270 CG LYS 45 6.587 -6.544 -5.065 1.00 0.00 ATOM 271 CD LYS 45 7.992 -6.301 -5.595 1.00 0.00 ATOM 272 CE LYS 45 7.998 -6.186 -7.110 1.00 0.00 ATOM 273 NZ LYS 45 9.370 -5.968 -7.644 1.00 0.00 ATOM 274 O LYS 45 5.820 -8.473 -1.241 1.00 0.00 ATOM 275 C LYS 45 5.429 -7.332 -1.497 1.00 0.00 ATOM 276 N ALA 46 5.205 -6.443 -0.546 1.00 0.00 ATOM 277 CA ALA 46 5.616 -6.769 0.807 1.00 0.00 ATOM 278 CB ALA 46 6.391 -5.613 1.419 1.00 0.00 ATOM 279 O ALA 46 3.307 -6.594 1.475 1.00 0.00 ATOM 280 C ALA 46 4.435 -7.057 1.709 1.00 0.00 ATOM 281 N ALA 47 4.701 -7.839 2.751 1.00 0.00 ATOM 282 CA ALA 47 3.666 -8.167 3.702 1.00 0.00 ATOM 283 CB ALA 47 3.997 -9.467 4.419 1.00 0.00 ATOM 284 O ALA 47 3.717 -7.280 5.934 1.00 0.00 ATOM 285 C ALA 47 3.549 -7.039 4.738 1.00 0.00 ATOM 286 N LEU 48 3.242 -5.817 4.301 1.00 0.00 ATOM 287 CA LEU 48 3.364 -4.687 5.204 1.00 0.00 ATOM 288 CB LEU 48 2.940 -3.393 4.505 1.00 0.00 ATOM 289 CG LEU 48 3.104 -2.103 5.309 1.00 0.00 ATOM 290 CD1 LEU 48 4.575 -1.811 5.562 1.00 0.00 ATOM 291 CD2 LEU 48 2.507 -0.923 4.561 1.00 0.00 ATOM 292 O LEU 48 1.361 -5.509 6.275 1.00 0.00 ATOM 293 C LEU 48 2.475 -4.935 6.389 1.00 0.00 ATOM 294 N THR 49 3.031 -4.559 7.527 1.00 0.00 ATOM 295 CA THR 49 2.414 -4.799 8.802 1.00 0.00 ATOM 296 CB THR 49 3.199 -5.841 9.622 1.00 0.00 ATOM 297 CG2 THR 49 3.354 -7.132 8.833 1.00 0.00 ATOM 298 OG1 THR 49 4.500 -5.328 9.931 1.00 0.00 ATOM 299 O THR 49 2.817 -2.450 9.259 1.00 0.00 ATOM 300 C THR 49 2.344 -3.517 9.638 1.00 0.00 ATOM 301 N PRO 50 1.685 -3.659 10.780 1.00 0.00 ATOM 302 CA PRO 50 1.317 -2.519 11.617 1.00 0.00 ATOM 303 CB PRO 50 0.891 -3.154 12.942 1.00 0.00 ATOM 304 CG PRO 50 0.341 -4.487 12.557 1.00 0.00 ATOM 305 CD PRO 50 1.247 -5.017 11.481 1.00 0.00 ATOM 306 O PRO 50 2.282 -0.306 11.684 1.00 0.00 ATOM 307 C PRO 50 2.445 -1.518 11.857 1.00 0.00 ATOM 308 N GLU 51 3.613 -2.022 12.258 1.00 0.00 ATOM 309 CA GLU 51 4.701 -1.096 12.628 1.00 0.00 ATOM 310 CB GLU 51 5.919 -1.874 13.130 1.00 0.00 ATOM 311 CG GLU 51 7.076 -0.995 13.578 1.00 0.00 ATOM 312 CD GLU 51 8.250 -1.800 14.100 1.00 0.00 ATOM 313 OE1 GLU 51 8.155 -3.045 14.124 1.00 0.00 ATOM 314 OE2 GLU 51 9.267 -1.186 14.485 1.00 0.00 ATOM 315 O GLU 51 5.204 0.979 11.497 1.00 0.00 ATOM 316 C GLU 51 5.126 -0.259 11.419 1.00 0.00 ATOM 317 N MET 52 5.409 -0.908 10.292 1.00 0.00 ATOM 318 CA MET 52 5.860 -0.152 9.108 1.00 0.00 ATOM 319 CB MET 52 6.289 -1.109 7.994 1.00 0.00 ATOM 320 CG MET 52 7.569 -1.874 8.289 1.00 0.00 ATOM 321 SD MET 52 8.025 -3.008 6.963 1.00 0.00 ATOM 322 CE MET 52 8.483 -1.852 5.674 1.00 0.00 ATOM 323 O MET 52 5.032 1.851 8.035 1.00 0.00 ATOM 324 C MET 52 4.753 0.748 8.549 1.00 0.00 ATOM 325 N ALA 53 3.501 0.306 8.652 1.00 0.00 ATOM 326 CA ALA 53 2.396 1.202 8.310 1.00 0.00 ATOM 327 CB ALA 53 1.063 0.543 8.624 1.00 0.00 ATOM 328 O ALA 53 2.435 3.571 8.561 1.00 0.00 ATOM 329 C ALA 53 2.517 2.480 9.114 1.00 0.00 ATOM 330 N ILE 54 2.691 2.361 10.424 1.00 0.00 ATOM 331 CA ILE 54 2.818 3.557 11.255 1.00 0.00 ATOM 332 CB ILE 54 2.804 3.206 12.754 1.00 0.00 ATOM 333 CG1 ILE 54 1.429 2.678 13.167 1.00 0.00 ATOM 334 CG2 ILE 54 3.119 4.436 13.593 1.00 0.00 ATOM 335 CD1 ILE 54 1.400 2.065 14.550 1.00 0.00 ATOM 336 O ILE 54 4.038 5.581 11.082 1.00 0.00 ATOM 337 C ILE 54 4.089 4.364 11.042 1.00 0.00 ATOM 338 N LYS 55 5.229 3.716 10.795 1.00 0.00 ATOM 339 CA LYS 55 6.457 4.469 10.480 1.00 0.00 ATOM 340 CB LYS 55 7.630 3.512 10.259 1.00 0.00 ATOM 341 CG LYS 55 8.114 2.819 11.523 1.00 0.00 ATOM 342 CD LYS 55 9.278 1.888 11.232 1.00 0.00 ATOM 343 CE LYS 55 9.746 1.177 12.492 1.00 0.00 ATOM 344 NZ LYS 55 10.865 0.237 12.215 1.00 0.00 ATOM 345 O LYS 55 6.702 6.463 9.127 1.00 0.00 ATOM 346 C LYS 55 6.255 5.298 9.209 1.00 0.00 ATOM 347 N LEU 56 5.597 4.698 8.213 1.00 0.00 ATOM 348 CA LEU 56 5.387 5.383 6.950 1.00 0.00 ATOM 349 CB LEU 56 4.811 4.421 5.909 1.00 0.00 ATOM 350 CG LEU 56 5.752 3.327 5.403 1.00 0.00 ATOM 351 CD1 LEU 56 5.002 2.338 4.524 1.00 0.00 ATOM 352 CD2 LEU 56 6.884 3.928 4.584 1.00 0.00 ATOM 353 O LEU 56 4.647 7.670 6.670 1.00 0.00 ATOM 354 C LEU 56 4.410 6.549 7.116 1.00 0.00 ATOM 355 N SER 57 3.310 6.309 7.802 1.00 0.00 ATOM 356 CA SER 57 2.326 7.371 8.018 1.00 0.00 ATOM 357 CB SER 57 1.105 6.826 8.762 1.00 0.00 ATOM 358 OG SER 57 0.402 5.886 7.968 1.00 0.00 ATOM 359 O SER 57 2.652 9.682 8.569 1.00 0.00 ATOM 360 C SER 57 2.913 8.520 8.850 1.00 0.00 ATOM 361 N VAL 58 3.700 8.193 9.871 1.00 0.00 ATOM 362 CA VAL 58 4.363 9.213 10.668 1.00 0.00 ATOM 363 CB VAL 58 5.184 8.592 11.812 1.00 0.00 ATOM 364 CG1 VAL 58 6.022 9.656 12.504 1.00 0.00 ATOM 365 CG2 VAL 58 4.266 7.956 12.844 1.00 0.00 ATOM 366 O VAL 58 5.366 11.258 9.952 1.00 0.00 ATOM 367 C VAL 58 5.305 10.028 9.808 1.00 0.00 ATOM 368 N VAL 59 6.037 9.372 8.910 1.00 0.00 ATOM 369 CA VAL 59 6.994 10.071 8.048 1.00 0.00 ATOM 370 CB VAL 59 7.798 9.084 7.182 1.00 0.00 ATOM 371 CG1 VAL 59 8.639 9.834 6.161 1.00 0.00 ATOM 372 CG2 VAL 59 8.727 8.249 8.049 1.00 0.00 ATOM 373 O VAL 59 6.853 12.086 6.747 1.00 0.00 ATOM 374 C VAL 59 6.298 11.040 7.099 1.00 0.00 ATOM 375 N ILE 60 5.095 10.685 6.667 1.00 0.00 ATOM 376 CA ILE 60 4.300 11.535 5.765 1.00 0.00 ATOM 377 CB ILE 60 3.417 10.690 4.827 1.00 0.00 ATOM 378 CG1 ILE 60 2.378 9.907 5.635 1.00 0.00 ATOM 379 CG2 ILE 60 4.267 9.700 4.045 1.00 0.00 ATOM 380 CD1 ILE 60 1.336 9.220 4.781 1.00 0.00 ATOM 381 O ILE 60 2.565 13.173 5.941 1.00 0.00 ATOM 382 C ILE 60 3.370 12.473 6.534 1.00 0.00 ATOM 383 N GLY 61 3.504 12.513 7.856 1.00 0.00 ATOM 384 CA GLY 61 2.711 13.390 8.712 1.00 0.00 ATOM 385 O GLY 61 0.470 14.207 8.391 1.00 0.00 ATOM 386 C GLY 61 1.199 13.228 8.480 1.00 0.00 ATOM 387 N SER 62 0.733 11.984 8.385 1.00 0.00 ATOM 388 CA SER 62 -0.680 11.695 8.174 1.00 0.00 ATOM 389 CB SER 62 -0.913 11.164 6.757 1.00 0.00 ATOM 390 OG SER 62 -0.570 12.134 5.785 1.00 0.00 ATOM 391 O SER 62 -0.318 9.690 9.471 1.00 0.00 ATOM 392 C SER 62 -1.075 10.633 9.217 1.00 0.00 ATOM 393 N SER 63 -2.246 10.790 9.833 1.00 0.00 ATOM 394 CA SER 63 -2.739 9.715 10.706 1.00 0.00 ATOM 395 CB SER 63 -4.019 10.150 11.421 1.00 0.00 ATOM 396 OG SER 63 -5.085 10.315 10.504 1.00 0.00 ATOM 397 O SER 63 -3.506 8.543 8.769 1.00 0.00 ATOM 398 C SER 63 -3.050 8.452 9.910 1.00 0.00 ATOM 399 N PRO 64 -2.810 7.277 10.505 1.00 0.00 ATOM 400 CA PRO 64 -3.171 6.020 9.836 1.00 0.00 ATOM 401 CB PRO 64 -2.850 4.943 10.875 1.00 0.00 ATOM 402 CG PRO 64 -1.757 5.534 11.701 1.00 0.00 ATOM 403 CD PRO 64 -2.085 6.994 11.843 1.00 0.00 ATOM 404 O PRO 64 -5.005 5.542 8.384 1.00 0.00 ATOM 405 C PRO 64 -4.646 6.016 9.461 1.00 0.00 ATOM 406 N GLN 65 -5.513 6.553 10.318 1.00 0.00 ATOM 407 CA GLN 65 -6.936 6.592 9.988 1.00 0.00 ATOM 408 CB GLN 65 -7.719 7.329 11.077 1.00 0.00 ATOM 409 CG GLN 65 -7.820 6.568 12.390 1.00 0.00 ATOM 410 CD GLN 65 -8.503 7.374 13.478 1.00 0.00 ATOM 411 OE1 GLN 65 -8.826 8.546 13.286 1.00 0.00 ATOM 412 NE2 GLN 65 -8.721 6.746 14.629 1.00 0.00 ATOM 413 O GLN 65 -8.009 6.890 7.888 1.00 0.00 ATOM 414 C GLN 65 -7.185 7.310 8.666 1.00 0.00 ATOM 415 N MET 66 -6.464 8.408 8.419 1.00 0.00 ATOM 416 CA MET 66 -6.659 9.169 7.198 1.00 0.00 ATOM 417 CB MET 66 -5.929 10.512 7.279 1.00 0.00 ATOM 418 CG MET 66 -6.535 11.488 8.276 1.00 0.00 ATOM 419 SD MET 66 -8.239 11.920 7.877 1.00 0.00 ATOM 420 CE MET 66 -8.007 12.870 6.378 1.00 0.00 ATOM 421 O MET 66 -6.729 8.417 4.920 1.00 0.00 ATOM 422 C MET 66 -6.123 8.405 5.995 1.00 0.00 ATOM 423 N TRP 67 -4.998 7.733 6.187 1.00 0.00 ATOM 424 CA TRP 67 -4.435 6.868 5.144 1.00 0.00 ATOM 425 CB TRP 67 -3.184 6.153 5.657 1.00 0.00 ATOM 426 CG TRP 67 -2.543 5.260 4.638 1.00 0.00 ATOM 427 CD1 TRP 67 -1.640 5.625 3.682 1.00 0.00 ATOM 428 CD2 TRP 67 -2.758 3.853 4.475 1.00 0.00 ATOM 429 CE2 TRP 67 -1.951 3.431 3.400 1.00 0.00 ATOM 430 CE3 TRP 67 -3.553 2.909 5.133 1.00 0.00 ATOM 431 NE1 TRP 67 -1.277 4.531 2.932 1.00 0.00 ATOM 432 CZ2 TRP 67 -1.915 2.106 2.968 1.00 0.00 ATOM 433 CZ3 TRP 67 -3.515 1.597 4.700 1.00 0.00 ATOM 434 CH2 TRP 67 -2.703 1.205 3.630 1.00 0.00 ATOM 435 O TRP 67 -5.816 5.671 3.587 1.00 0.00 ATOM 436 C TRP 67 -5.485 5.840 4.755 1.00 0.00 ATOM 437 N LEU 68 -6.061 5.159 5.740 1.00 0.00 ATOM 438 CA LEU 68 -6.995 4.076 5.436 1.00 0.00 ATOM 439 CB LEU 68 -7.307 3.267 6.698 1.00 0.00 ATOM 440 CG LEU 68 -8.164 2.014 6.505 1.00 0.00 ATOM 441 CD1 LEU 68 -7.483 1.036 5.562 1.00 0.00 ATOM 442 CD2 LEU 68 -8.395 1.312 7.835 1.00 0.00 ATOM 443 O LEU 68 -8.964 3.965 4.088 1.00 0.00 ATOM 444 C LEU 68 -8.311 4.615 4.885 1.00 0.00 ATOM 445 N ASN 69 -8.712 5.810 5.306 1.00 0.00 ATOM 446 CA ASN 69 -9.900 6.421 4.739 1.00 0.00 ATOM 447 CB ASN 69 -10.192 7.758 5.422 1.00 0.00 ATOM 448 CG ASN 69 -10.730 7.589 6.829 1.00 0.00 ATOM 449 ND2 ASN 69 -10.628 8.641 7.632 1.00 0.00 ATOM 450 OD1 ASN 69 -11.230 6.522 7.188 1.00 0.00 ATOM 451 O ASN 69 -10.583 6.397 2.437 1.00 0.00 ATOM 452 C ASN 69 -9.693 6.669 3.240 1.00 0.00 ATOM 453 N LEU 70 -8.520 7.167 2.869 1.00 0.00 ATOM 454 CA LEU 70 -8.215 7.356 1.450 1.00 0.00 ATOM 455 CB LEU 70 -6.848 8.023 1.280 1.00 0.00 ATOM 456 CG LEU 70 -6.749 9.486 1.718 1.00 0.00 ATOM 457 CD1 LEU 70 -5.306 9.965 1.667 1.00 0.00 ATOM 458 CD2 LEU 70 -7.579 10.377 0.807 1.00 0.00 ATOM 459 O LEU 70 -8.689 5.904 -0.438 1.00 0.00 ATOM 460 C LEU 70 -8.181 6.021 0.688 1.00 0.00 ATOM 461 N GLN 71 -7.621 4.997 1.313 1.00 0.00 ATOM 462 CA GLN 71 -7.616 3.672 0.719 1.00 0.00 ATOM 463 CB GLN 71 -6.934 2.669 1.652 1.00 0.00 ATOM 464 CG GLN 71 -6.832 1.264 1.085 1.00 0.00 ATOM 465 CD GLN 71 -6.109 0.310 2.016 1.00 0.00 ATOM 466 OE1 GLN 71 -5.735 0.678 3.130 1.00 0.00 ATOM 467 NE2 GLN 71 -5.908 -0.922 1.562 1.00 0.00 ATOM 468 O GLN 71 -9.365 2.631 -0.586 1.00 0.00 ATOM 469 C GLN 71 -9.056 3.199 0.461 1.00 0.00 ATOM 470 N ASN 72 -9.923 3.426 1.433 1.00 0.00 ATOM 471 CA ASN 72 -11.322 3.015 1.363 1.00 0.00 ATOM 472 CB ASN 72 -12.020 3.266 2.702 1.00 0.00 ATOM 473 CG ASN 72 -11.590 2.286 3.776 1.00 0.00 ATOM 474 ND2 ASN 72 -11.791 2.663 5.034 1.00 0.00 ATOM 475 OD1 ASN 72 -11.084 1.205 3.477 1.00 0.00 ATOM 476 O ASN 72 -13.085 3.229 -0.256 1.00 0.00 ATOM 477 C ASN 72 -12.119 3.771 0.293 1.00 0.00 ATOM 478 N ALA 73 -11.701 5.008 0.027 1.00 0.00 ATOM 479 CA ALA 73 -12.395 5.902 -0.907 1.00 0.00 ATOM 480 CB ALA 73 -12.102 7.356 -0.567 1.00 0.00 ATOM 481 O ALA 73 -12.561 6.233 -3.261 1.00 0.00 ATOM 482 C ALA 73 -11.961 5.665 -2.338 1.00 0.00 TER END