PFRMAT TS TARGET T0311 AUTHOR SAM_T06_server REMARK 6 REMARK 6 T0311 model 4 Thu Jun 1 13:31:52 2006 METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and METHOD the SAM-T02 method in CASP5. METHOD METHOD We start with a fully automated method: METHOD METHOD Use the SAM-T2K and SAM-T04 methods for finding homologs of the METHOD target and aligning them. METHOD METHOD Make local structure predictions using neural nets and the METHOD multiple alignments. Different neural nets are used for the METHOD SAM-T2K alignments and the SAM-T04 alignments. METHOD We currently use 8 local-structure alphabets: METHOD DSSP METHOD STRIDE METHOD STR2 an extended version of DSSP that splits the beta strands METHOD into multiple classes (parallel/antiparallel/mixed, METHOD edge/center) METHOD ALPHA an discretization of the alpha torsion angle: METHOD CA(i-i), CA(i), CA(i+1), CA(i+2) METHOD BYS a discretization of Ramachandran plots, due to Bystroff METHOD CB_burial_14_7 a 7-state discretization of the number of C_beta METHOD atoms in a 14 Angstrom radius sphere around the C_beta. METHOD near-backbone-11 an 11-state discretization of the number of METHOD residues (represented by near-backbone points) in a METHOD 9.65 Angstrom radius sphere around the sidechain proxy METHOD spot for the residue. METHOD DSSP_EHL2 CASP's collapse of the DSSP alphabet METHOD DSSP_EHL2 is not predicted directly by a METHOD neural net, but is computed as a weighted METHOD average of the other backbone alphabet predictions. METHOD METHOD We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure) METHOD and use them to score a template library of 6400 (t04) or 9900 (t2k) templates METHOD We also used a single-track HMM to score not just the template METHOD library, but a non-redundant copy of the entire PDB. METHOD METHOD We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and METHOD AA, str2, near-backbone-11) for finding and aligning more remote METHOD homologs. METHOD METHOD One-track HMMs built from the template library multiple alignments METHOD were used to score the target sequence (for early targets, only METHOD t2k template library was searched this way). METHOD METHOD All the logs of e-values were combined in a weighted average (with METHOD rather arbitrary weights, since we did not have time to METHOD optimize them), and the best templates ranked. Ranking was METHOD separate for predictions from the t2k and t04 multiple alignments. METHOD METHOD Alignments of the target to the top templates were made using METHOD several different alignment methods (mainly using the SAM hmmscore METHOD program, but a few alignments were made with Bob Edgar's MUSCLE METHOD profile-profile aligner). METHOD METHOD Generate fragments (short 9-residue alignments for each position) METHOD using SAM's "fragfinder" program and the 3-track HMM. METHOD METHOD Then the "undertaker" program (named because it optimizes burial) METHOD is used to try to combine the alignments and the fragments into METHOD a consistent 3D model. No single alignment or parent template METHOD was used, though in many cases one had much more influence than METHOD the others. The alignment scores were not passed to undertaker, METHOD but were used only to pick the set of alignments and fragments METHOD that undertaker would see. Helix and strand constraints METHOD generated from the secondary-structure predictions are passed to METHOD undertaker to use in the cost function. METHOD METHOD One important change in this server over previous methods is that METHOD sheet constraints are extracted from the top few alignments and METHOD passed to undertaker. METHOD ------------- MODEL 4 PARENT N/A ATOM 2 N ASP 11 -1.454 5.647 -4.056 1.00 0.00 ATOM 3 CA ASP 11 -2.260 6.696 -4.646 1.00 0.00 ATOM 4 CB ASP 11 -3.713 6.236 -4.792 1.00 0.00 ATOM 5 CG ASP 11 -3.893 5.218 -5.901 1.00 0.00 ATOM 6 OD1 ASP 11 -2.954 5.044 -6.706 1.00 0.00 ATOM 7 OD2 ASP 11 -4.972 4.595 -5.966 1.00 0.00 ATOM 8 O ASP 11 -2.135 9.014 -4.277 1.00 0.00 ATOM 9 C ASP 11 -2.214 7.907 -3.759 1.00 0.00 ATOM 10 N ILE 12 -2.180 7.758 -2.441 1.00 0.00 ATOM 11 CA ILE 12 -2.058 8.897 -1.552 1.00 0.00 ATOM 12 CB ILE 12 -2.201 8.480 -0.077 1.00 0.00 ATOM 13 CG1 ILE 12 -3.628 8.007 0.208 1.00 0.00 ATOM 14 CG2 ILE 12 -1.891 9.652 0.841 1.00 0.00 ATOM 15 CD1 ILE 12 -3.792 7.334 1.553 1.00 0.00 ATOM 16 O ILE 12 -0.630 10.761 -1.750 1.00 0.00 ATOM 17 C ILE 12 -0.716 9.537 -1.734 1.00 0.00 ATOM 18 N ILE 13 0.346 8.758 -1.846 1.00 0.00 ATOM 19 CA ILE 13 1.664 9.299 -2.091 1.00 0.00 ATOM 20 CB ILE 13 2.722 8.184 -2.185 1.00 0.00 ATOM 21 CG1 ILE 13 2.906 7.508 -0.825 1.00 0.00 ATOM 22 CG2 ILE 13 4.061 8.757 -2.623 1.00 0.00 ATOM 23 CD1 ILE 13 3.721 6.235 -0.882 1.00 0.00 ATOM 24 O ILE 13 2.218 11.195 -3.430 1.00 0.00 ATOM 25 C ILE 13 1.708 10.086 -3.404 1.00 0.00 ATOM 26 N GLN 14 1.220 9.569 -4.513 1.00 0.00 ATOM 27 CA GLN 14 1.144 10.307 -5.753 1.00 0.00 ATOM 28 CB GLN 14 0.512 9.448 -6.849 1.00 0.00 ATOM 29 CG GLN 14 1.394 8.308 -7.330 1.00 0.00 ATOM 30 CD GLN 14 0.695 7.412 -8.332 1.00 0.00 ATOM 31 OE1 GLN 14 -0.492 7.585 -8.611 1.00 0.00 ATOM 32 NE2 GLN 14 1.428 6.450 -8.879 1.00 0.00 ATOM 33 O GLN 14 0.751 12.605 -5.989 1.00 0.00 ATOM 34 C GLN 14 0.296 11.558 -5.564 1.00 0.00 ATOM 35 N GLU 15 -0.850 11.622 -4.895 1.00 0.00 ATOM 36 CA GLU 15 -1.530 12.889 -4.650 1.00 0.00 ATOM 37 CB GLU 15 -2.878 12.651 -3.964 1.00 0.00 ATOM 38 CG GLU 15 -3.928 12.018 -4.863 1.00 0.00 ATOM 39 CD GLU 15 -5.216 11.710 -4.125 1.00 0.00 ATOM 40 OE1 GLU 15 -5.263 11.926 -2.895 1.00 0.00 ATOM 41 OE2 GLU 15 -6.179 11.252 -4.776 1.00 0.00 ATOM 42 O GLU 15 -0.850 15.091 -3.894 1.00 0.00 ATOM 43 C GLU 15 -0.751 13.864 -3.749 1.00 0.00 ATOM 44 N SER 16 0.030 13.402 -2.788 1.00 0.00 ATOM 45 CA SER 16 0.580 14.306 -1.813 1.00 0.00 ATOM 46 CB SER 16 0.371 13.762 -0.399 1.00 0.00 ATOM 47 OG SER 16 1.049 12.531 -0.220 1.00 0.00 ATOM 48 O SER 16 2.540 15.399 -1.261 1.00 0.00 ATOM 49 C SER 16 2.031 14.536 -1.972 1.00 0.00 ATOM 50 N LEU 17 2.702 13.872 -2.912 1.00 0.00 ATOM 51 CA LEU 17 4.149 13.973 -2.945 1.00 0.00 ATOM 52 CB LEU 17 4.725 13.077 -4.046 1.00 0.00 ATOM 53 CG LEU 17 4.619 11.569 -3.816 1.00 0.00 ATOM 54 CD1 LEU 17 5.058 10.806 -5.056 1.00 0.00 ATOM 55 CD2 LEU 17 5.503 11.138 -2.656 1.00 0.00 ATOM 56 O LEU 17 5.684 15.749 -2.584 1.00 0.00 ATOM 57 C LEU 17 4.695 15.355 -3.210 1.00 0.00 ATOM 58 N ASP 18 4.067 16.144 -4.085 1.00 0.00 ATOM 59 CA ASP 18 4.606 17.466 -4.348 1.00 0.00 ATOM 60 CB ASP 18 3.995 18.049 -5.624 1.00 0.00 ATOM 61 CG ASP 18 4.499 17.363 -6.877 1.00 0.00 ATOM 62 OD1 ASP 18 5.501 16.621 -6.787 1.00 0.00 ATOM 63 OD2 ASP 18 3.894 17.566 -7.951 1.00 0.00 ATOM 64 O ASP 18 5.236 18.891 -2.603 1.00 0.00 ATOM 65 C ASP 18 4.284 18.382 -3.184 1.00 0.00 ATOM 66 N GLU 19 3.064 18.539 -2.692 1.00 0.00 ATOM 67 CA GLU 19 2.826 19.359 -1.519 1.00 0.00 ATOM 68 CB GLU 19 1.366 19.248 -1.076 1.00 0.00 ATOM 69 CG GLU 19 1.011 20.121 0.117 1.00 0.00 ATOM 70 CD GLU 19 -0.457 20.033 0.488 1.00 0.00 ATOM 71 OE1 GLU 19 -1.201 19.306 -0.203 1.00 0.00 ATOM 72 OE2 GLU 19 -0.862 20.690 1.469 1.00 0.00 ATOM 73 O GLU 19 4.136 19.871 0.375 1.00 0.00 ATOM 74 C GLU 19 3.673 18.974 -0.325 1.00 0.00 ATOM 75 N LEU 20 3.935 17.693 -0.067 1.00 0.00 ATOM 76 CA LEU 20 4.756 17.329 1.077 1.00 0.00 ATOM 77 CB LEU 20 4.323 15.973 1.637 1.00 0.00 ATOM 78 CG LEU 20 2.895 15.886 2.179 1.00 0.00 ATOM 79 CD1 LEU 20 2.568 14.466 2.609 1.00 0.00 ATOM 80 CD2 LEU 20 2.721 16.800 3.383 1.00 0.00 ATOM 81 O LEU 20 7.038 16.919 1.659 1.00 0.00 ATOM 82 C LEU 20 6.243 17.215 0.762 1.00 0.00 ATOM 83 N ASN 21 6.662 17.450 -0.482 1.00 0.00 ATOM 84 CA ASN 21 8.073 17.389 -0.874 1.00 0.00 ATOM 85 CB ASN 21 8.902 18.374 -0.048 1.00 0.00 ATOM 86 CG ASN 21 8.573 19.820 -0.360 1.00 0.00 ATOM 87 ND2 ASN 21 8.775 20.696 0.616 1.00 0.00 ATOM 88 OD1 ASN 21 8.140 20.142 -1.467 1.00 0.00 ATOM 89 O ASN 21 9.879 15.863 -0.240 1.00 0.00 ATOM 90 C ASN 21 8.717 16.011 -0.683 1.00 0.00 ATOM 91 N VAL 22 7.959 14.970 -1.038 1.00 0.00 ATOM 92 CA VAL 22 8.435 13.602 -0.794 1.00 0.00 ATOM 93 CB VAL 22 7.312 12.704 -0.242 1.00 0.00 ATOM 94 CG1 VAL 22 6.804 13.242 1.085 1.00 0.00 ATOM 95 CG2 VAL 22 6.145 12.651 -1.218 1.00 0.00 ATOM 96 O VAL 22 8.699 13.330 -3.173 1.00 0.00 ATOM 97 C VAL 22 8.958 12.913 -2.035 1.00 0.00 ATOM 98 N SER 23 9.721 11.855 -1.838 1.00 0.00 ATOM 99 CA SER 23 10.024 10.937 -2.919 1.00 0.00 ATOM 100 CB SER 23 11.304 11.364 -3.642 1.00 0.00 ATOM 101 OG SER 23 12.434 11.235 -2.798 1.00 0.00 ATOM 102 O SER 23 10.197 9.593 -0.941 1.00 0.00 ATOM 103 C SER 23 10.189 9.599 -2.190 1.00 0.00 ATOM 104 N LEU 24 10.314 8.471 -2.918 1.00 0.00 ATOM 105 CA LEU 24 10.593 7.151 -2.326 1.00 0.00 ATOM 106 CB LEU 24 10.694 6.084 -3.417 1.00 0.00 ATOM 107 CG LEU 24 9.392 5.725 -4.137 1.00 0.00 ATOM 108 CD1 LEU 24 9.664 4.797 -5.310 1.00 0.00 ATOM 109 CD2 LEU 24 8.430 5.027 -3.190 1.00 0.00 ATOM 110 O LEU 24 11.914 6.590 -0.458 1.00 0.00 ATOM 111 C LEU 24 11.895 7.155 -1.557 1.00 0.00 ATOM 112 N ARG 25 13.007 7.768 -2.001 1.00 0.00 ATOM 113 CA ARG 25 14.200 7.842 -1.177 1.00 0.00 ATOM 114 CB ARG 25 15.354 8.471 -1.960 1.00 0.00 ATOM 115 CG ARG 25 15.917 7.582 -3.057 1.00 0.00 ATOM 116 CD ARG 25 17.004 8.295 -3.843 1.00 0.00 ATOM 117 NE ARG 25 17.554 7.456 -4.905 1.00 0.00 ATOM 118 CZ ARG 25 18.460 7.864 -5.786 1.00 0.00 ATOM 119 NH1 ARG 25 18.902 7.030 -6.717 1.00 0.00 ATOM 120 NH2 ARG 25 18.921 9.105 -5.737 1.00 0.00 ATOM 121 O ARG 25 14.578 8.304 1.163 1.00 0.00 ATOM 122 C ARG 25 14.057 8.684 0.117 1.00 0.00 ATOM 123 N GLU 26 13.375 9.808 0.232 1.00 0.00 ATOM 124 CA GLU 26 13.251 10.517 1.501 1.00 0.00 ATOM 125 CB GLU 26 12.629 11.898 1.287 1.00 0.00 ATOM 126 CG GLU 26 13.536 12.882 0.564 1.00 0.00 ATOM 127 CD GLU 26 12.843 14.196 0.260 1.00 0.00 ATOM 128 OE1 GLU 26 11.635 14.311 0.550 1.00 0.00 ATOM 129 OE2 GLU 26 13.512 15.110 -0.269 1.00 0.00 ATOM 130 O GLU 26 12.690 9.704 3.676 1.00 0.00 ATOM 131 C GLU 26 12.374 9.762 2.487 1.00 0.00 ATOM 132 N PHE 27 11.252 9.192 2.036 1.00 0.00 ATOM 133 CA PHE 27 10.458 8.289 2.847 1.00 0.00 ATOM 134 CB PHE 27 9.271 7.752 2.046 1.00 0.00 ATOM 135 CG PHE 27 8.401 6.801 2.815 1.00 0.00 ATOM 136 CD1 PHE 27 7.473 7.273 3.728 1.00 0.00 ATOM 137 CD2 PHE 27 8.508 5.434 2.627 1.00 0.00 ATOM 138 CE1 PHE 27 6.671 6.397 4.437 1.00 0.00 ATOM 139 CE2 PHE 27 7.706 4.559 3.335 1.00 0.00 ATOM 140 CZ PHE 27 6.792 5.035 4.238 1.00 0.00 ATOM 141 O PHE 27 11.171 6.643 4.467 1.00 0.00 ATOM 142 C PHE 27 11.292 7.093 3.322 1.00 0.00 ATOM 143 N ALA 28 12.117 6.516 2.445 1.00 0.00 ATOM 144 CA ALA 28 13.014 5.458 2.805 1.00 0.00 ATOM 145 CB ALA 28 13.963 5.154 1.656 1.00 0.00 ATOM 146 O ALA 28 13.762 5.257 5.057 1.00 0.00 ATOM 147 C ALA 28 13.800 5.905 4.011 1.00 0.00 ATOM 148 N ARG 29 14.447 7.067 3.934 1.00 0.00 ATOM 149 CA ARG 29 15.250 7.598 5.035 1.00 0.00 ATOM 150 CB ARG 29 15.813 8.973 4.673 1.00 0.00 ATOM 151 CG ARG 29 16.900 8.941 3.612 1.00 0.00 ATOM 152 CD ARG 29 17.380 10.342 3.269 1.00 0.00 ATOM 153 NE ARG 29 18.391 10.332 2.215 1.00 0.00 ATOM 154 CZ ARG 29 18.935 11.424 1.691 1.00 0.00 ATOM 155 NH1 ARG 29 19.847 11.318 0.735 1.00 0.00 ATOM 156 NH2 ARG 29 18.563 12.622 2.123 1.00 0.00 ATOM 157 O ARG 29 14.851 7.228 7.334 1.00 0.00 ATOM 158 C ARG 29 14.436 7.752 6.308 1.00 0.00 ATOM 159 N ALA 30 13.251 8.362 6.321 1.00 0.00 ATOM 160 CA ALA 30 12.452 8.502 7.536 1.00 0.00 ATOM 161 CB ALA 30 11.158 9.246 7.238 1.00 0.00 ATOM 162 O ALA 30 11.810 7.102 9.374 1.00 0.00 ATOM 163 C ALA 30 12.057 7.171 8.171 1.00 0.00 ATOM 164 N MET 31 11.930 6.066 7.437 1.00 0.00 ATOM 165 CA MET 31 11.610 4.783 8.050 1.00 0.00 ATOM 166 CB MET 31 10.625 4.002 7.176 1.00 0.00 ATOM 167 CG MET 31 9.290 4.699 6.972 1.00 0.00 ATOM 168 SD MET 31 8.176 3.769 5.903 1.00 0.00 ATOM 169 CE MET 31 7.793 2.367 6.950 1.00 0.00 ATOM 170 O MET 31 12.821 2.753 8.470 1.00 0.00 ATOM 171 C MET 31 12.890 3.962 8.210 1.00 0.00 ATOM 172 N GLU 32 14.053 4.594 7.979 1.00 0.00 ATOM 173 CA GLU 32 15.372 3.996 8.115 1.00 0.00 ATOM 174 CB GLU 32 15.618 3.562 9.562 1.00 0.00 ATOM 175 CG GLU 32 15.605 4.706 10.563 1.00 0.00 ATOM 176 CD GLU 32 15.880 4.244 11.979 1.00 0.00 ATOM 177 OE1 GLU 32 16.022 3.019 12.187 1.00 0.00 ATOM 178 OE2 GLU 32 15.954 5.102 12.881 1.00 0.00 ATOM 179 O GLU 32 16.191 1.798 7.623 1.00 0.00 ATOM 180 C GLU 32 15.542 2.773 7.237 1.00 0.00 ATOM 181 N ILE 33 15.009 2.849 6.033 1.00 0.00 ATOM 182 CA ILE 33 14.926 1.730 5.141 1.00 0.00 ATOM 183 CB ILE 33 13.473 1.250 4.970 1.00 0.00 ATOM 184 CG1 ILE 33 12.607 2.369 4.388 1.00 0.00 ATOM 185 CG2 ILE 33 12.888 0.834 6.311 1.00 0.00 ATOM 186 CD1 ILE 33 11.216 1.922 3.996 1.00 0.00 ATOM 187 O ILE 33 15.827 3.423 3.702 1.00 0.00 ATOM 188 C ILE 33 15.488 2.241 3.814 1.00 0.00 ATOM 189 N ALA 34 15.616 1.426 2.761 1.00 0.00 ATOM 190 CA ALA 34 16.116 1.859 1.459 1.00 0.00 ATOM 191 CB ALA 34 16.977 0.772 0.833 1.00 0.00 ATOM 192 O ALA 34 13.794 1.745 0.747 1.00 0.00 ATOM 193 C ALA 34 14.947 2.162 0.511 1.00 0.00 ATOM 194 N PRO 35 15.236 2.857 -0.594 1.00 0.00 ATOM 195 CA PRO 35 14.215 3.182 -1.547 1.00 0.00 ATOM 196 CB PRO 35 14.960 3.961 -2.634 1.00 0.00 ATOM 197 CG PRO 35 16.111 4.588 -1.921 1.00 0.00 ATOM 198 CD PRO 35 16.583 3.574 -0.918 1.00 0.00 ATOM 199 O PRO 35 12.399 1.946 -2.266 1.00 0.00 ATOM 200 C PRO 35 13.607 1.912 -2.072 1.00 0.00 ATOM 201 N SER 36 14.342 0.821 -2.342 1.00 0.00 ATOM 202 CA SER 36 13.718 -0.377 -2.905 1.00 0.00 ATOM 203 CB SER 36 14.785 -1.386 -3.335 1.00 0.00 ATOM 204 OG SER 36 15.498 -1.884 -2.216 1.00 0.00 ATOM 205 O SER 36 11.836 -1.662 -2.341 1.00 0.00 ATOM 206 C SER 36 12.817 -1.052 -1.898 1.00 0.00 ATOM 207 N THR 37 13.090 -0.840 -0.593 1.00 0.00 ATOM 208 CA THR 37 12.240 -1.311 0.494 1.00 0.00 ATOM 209 CB THR 37 12.874 -1.029 1.869 1.00 0.00 ATOM 210 CG2 THR 37 11.953 -1.493 2.987 1.00 0.00 ATOM 211 OG1 THR 37 14.121 -1.727 1.977 1.00 0.00 ATOM 212 O THR 37 9.865 -1.239 0.560 1.00 0.00 ATOM 213 C THR 37 10.905 -0.616 0.439 1.00 0.00 ATOM 214 N ALA 38 10.868 0.692 0.204 1.00 0.00 ATOM 215 CA ALA 38 9.641 1.466 0.020 1.00 0.00 ATOM 216 CB ALA 38 9.954 2.954 -0.029 1.00 0.00 ATOM 217 O ALA 38 7.676 0.980 -1.283 1.00 0.00 ATOM 218 C ALA 38 8.913 1.117 -1.263 1.00 0.00 ATOM 219 N SER 39 9.613 0.977 -2.367 1.00 0.00 ATOM 220 CA SER 39 8.944 0.607 -3.610 1.00 0.00 ATOM 221 CB SER 39 9.963 0.450 -4.740 1.00 0.00 ATOM 222 OG SER 39 10.572 1.690 -5.054 1.00 0.00 ATOM 223 O SER 39 7.040 -0.879 -3.936 1.00 0.00 ATOM 224 C SER 39 8.186 -0.717 -3.481 1.00 0.00 ATOM 225 N ARG 40 8.799 -1.683 -2.798 1.00 0.00 ATOM 226 CA ARG 40 8.186 -2.980 -2.536 1.00 0.00 ATOM 227 CB ARG 40 9.143 -3.875 -1.745 1.00 0.00 ATOM 228 CG ARG 40 10.336 -4.369 -2.545 1.00 0.00 ATOM 229 CD ARG 40 11.280 -5.189 -1.681 1.00 0.00 ATOM 230 NE ARG 40 12.449 -5.646 -2.428 1.00 0.00 ATOM 231 CZ ARG 40 13.461 -6.319 -1.893 1.00 0.00 ATOM 232 NH1 ARG 40 14.483 -6.696 -2.651 1.00 0.00 ATOM 233 NH2 ARG 40 13.452 -6.616 -0.601 1.00 0.00 ATOM 234 O ARG 40 5.926 -3.472 -2.066 1.00 0.00 ATOM 235 C ARG 40 6.915 -2.822 -1.736 1.00 0.00 ATOM 236 N LEU 41 6.848 -1.932 -0.726 1.00 0.00 ATOM 237 CA LEU 41 5.613 -1.716 0.005 1.00 0.00 ATOM 238 CB LEU 41 5.859 -0.818 1.218 1.00 0.00 ATOM 239 CG LEU 41 6.677 -1.427 2.358 1.00 0.00 ATOM 240 CD1 LEU 41 7.006 -0.376 3.407 1.00 0.00 ATOM 241 CD2 LEU 41 5.904 -2.549 3.036 1.00 0.00 ATOM 242 O LEU 41 3.498 -1.570 -1.116 1.00 0.00 ATOM 243 C LEU 41 4.598 -1.046 -0.917 1.00 0.00 ATOM 244 N LEU 42 4.957 0.041 -1.612 1.00 0.00 ATOM 245 CA LEU 42 4.010 0.751 -2.495 1.00 0.00 ATOM 246 CB LEU 42 4.695 1.942 -3.167 1.00 0.00 ATOM 247 CG LEU 42 3.804 2.842 -4.026 1.00 0.00 ATOM 248 CD1 LEU 42 2.691 3.453 -3.189 1.00 0.00 ATOM 249 CD2 LEU 42 4.614 3.973 -4.642 1.00 0.00 ATOM 250 O LEU 42 2.285 0.143 -4.073 1.00 0.00 ATOM 251 C LEU 42 3.420 -0.049 -3.613 1.00 0.00 ATOM 252 N THR 43 4.286 -0.942 -4.063 1.00 0.00 ATOM 253 CA THR 43 3.921 -1.793 -5.179 1.00 0.00 ATOM 254 CB THR 43 5.126 -2.070 -6.098 1.00 0.00 ATOM 255 CG2 THR 43 5.641 -0.773 -6.705 1.00 0.00 ATOM 256 OG1 THR 43 6.178 -2.678 -5.339 1.00 0.00 ATOM 257 O THR 43 3.343 -4.027 -5.718 1.00 0.00 ATOM 258 C THR 43 3.376 -3.172 -4.843 1.00 0.00 ATOM 259 N GLY 44 2.928 -3.446 -3.618 1.00 0.00 ATOM 260 CA GLY 44 2.297 -4.719 -3.319 1.00 0.00 ATOM 261 O GLY 44 2.758 -6.996 -3.924 1.00 0.00 ATOM 262 C GLY 44 3.219 -5.927 -3.518 1.00 0.00 ATOM 263 N LYS 45 4.515 -5.807 -3.242 1.00 0.00 ATOM 264 CA LYS 45 5.461 -6.901 -3.346 1.00 0.00 ATOM 265 CB LYS 45 6.779 -6.414 -3.950 1.00 0.00 ATOM 266 CG LYS 45 6.666 -5.949 -5.392 1.00 0.00 ATOM 267 CD LYS 45 8.031 -5.622 -5.975 1.00 0.00 ATOM 268 CE LYS 45 7.917 -5.136 -7.411 1.00 0.00 ATOM 269 NZ LYS 45 9.223 -4.655 -7.940 1.00 0.00 ATOM 270 O LYS 45 5.645 -8.613 -1.699 1.00 0.00 ATOM 271 C LYS 45 5.667 -7.402 -1.919 1.00 0.00 ATOM 272 N ALA 46 5.927 -6.509 -0.945 1.00 0.00 ATOM 273 CA ALA 46 6.172 -6.876 0.447 1.00 0.00 ATOM 274 CB ALA 46 7.453 -6.226 0.950 1.00 0.00 ATOM 275 O ALA 46 4.402 -5.355 0.929 1.00 0.00 ATOM 276 C ALA 46 4.995 -6.387 1.237 1.00 0.00 ATOM 277 N ALA 47 4.612 -7.137 2.255 1.00 0.00 ATOM 278 CA ALA 47 3.438 -6.805 3.009 1.00 0.00 ATOM 279 CB ALA 47 2.975 -8.001 3.826 1.00 0.00 ATOM 280 O ALA 47 4.840 -5.594 4.477 1.00 0.00 ATOM 281 C ALA 47 3.727 -5.668 3.946 1.00 0.00 ATOM 282 N LEU 48 2.710 -4.823 4.125 1.00 0.00 ATOM 283 CA LEU 48 2.700 -3.800 5.145 1.00 0.00 ATOM 284 CB LEU 48 1.599 -2.774 4.865 1.00 0.00 ATOM 285 CG LEU 48 1.729 -1.980 3.563 1.00 0.00 ATOM 286 CD1 LEU 48 0.522 -1.076 3.364 1.00 0.00 ATOM 287 CD2 LEU 48 2.976 -1.110 3.586 1.00 0.00 ATOM 288 O LEU 48 1.704 -5.415 6.633 1.00 0.00 ATOM 289 C LEU 48 2.447 -4.427 6.506 1.00 0.00 ATOM 290 N THR 49 3.048 -3.846 7.527 1.00 0.00 ATOM 291 CA THR 49 2.772 -4.279 8.867 1.00 0.00 ATOM 292 CB THR 49 4.035 -4.834 9.552 1.00 0.00 ATOM 293 CG2 THR 49 4.634 -5.965 8.731 1.00 0.00 ATOM 294 OG1 THR 49 5.007 -3.790 9.683 1.00 0.00 ATOM 295 O THR 49 2.300 -1.963 9.042 1.00 0.00 ATOM 296 C THR 49 2.264 -3.052 9.612 1.00 0.00 ATOM 297 N PRO 50 1.776 -3.204 10.840 1.00 0.00 ATOM 298 CA PRO 50 1.190 -2.163 11.650 1.00 0.00 ATOM 299 CB PRO 50 0.786 -2.880 12.939 1.00 0.00 ATOM 300 CG PRO 50 0.571 -4.298 12.527 1.00 0.00 ATOM 301 CD PRO 50 1.611 -4.590 11.480 1.00 0.00 ATOM 302 O PRO 50 1.741 0.148 11.923 1.00 0.00 ATOM 303 C PRO 50 2.161 -1.014 11.955 1.00 0.00 ATOM 304 N GLU 51 3.470 -1.227 12.139 1.00 0.00 ATOM 305 CA GLU 51 4.427 -0.175 12.486 1.00 0.00 ATOM 306 CB GLU 51 5.724 -0.787 13.019 1.00 0.00 ATOM 307 CG GLU 51 5.579 -1.474 14.367 1.00 0.00 ATOM 308 CD GLU 51 6.877 -2.086 14.852 1.00 0.00 ATOM 309 OE1 GLU 51 7.892 -1.972 14.134 1.00 0.00 ATOM 310 OE2 GLU 51 6.881 -2.680 15.951 1.00 0.00 ATOM 311 O GLU 51 4.916 1.941 11.422 1.00 0.00 ATOM 312 C GLU 51 4.820 0.720 11.325 1.00 0.00 ATOM 313 N MET 52 5.112 0.069 10.213 1.00 0.00 ATOM 314 CA MET 52 5.412 0.669 8.906 1.00 0.00 ATOM 315 CB MET 52 5.746 -0.416 7.881 1.00 0.00 ATOM 316 CG MET 52 7.067 -1.123 8.134 1.00 0.00 ATOM 317 SD MET 52 7.406 -2.419 6.927 1.00 0.00 ATOM 318 CE MET 52 8.942 -3.083 7.565 1.00 0.00 ATOM 319 O MET 52 4.356 2.567 8.061 1.00 0.00 ATOM 320 C MET 52 4.198 1.435 8.457 1.00 0.00 ATOM 321 N ALA 53 2.991 0.884 8.478 1.00 0.00 ATOM 322 CA ALA 53 1.818 1.603 8.111 1.00 0.00 ATOM 323 CB ALA 53 0.592 0.713 8.234 1.00 0.00 ATOM 324 O ALA 53 1.270 3.877 8.457 1.00 0.00 ATOM 325 C ALA 53 1.598 2.816 8.990 1.00 0.00 ATOM 326 N ILE 54 1.746 2.718 10.315 1.00 0.00 ATOM 327 CA ILE 54 1.607 3.829 11.250 1.00 0.00 ATOM 328 CB ILE 54 1.831 3.375 12.704 1.00 0.00 ATOM 329 CG1 ILE 54 0.698 2.448 13.153 1.00 0.00 ATOM 330 CG2 ILE 54 1.869 4.576 13.637 1.00 0.00 ATOM 331 CD1 ILE 54 0.969 1.746 14.466 1.00 0.00 ATOM 332 O ILE 54 2.248 6.131 11.001 1.00 0.00 ATOM 333 C ILE 54 2.605 4.949 10.981 1.00 0.00 ATOM 334 N LYS 55 3.854 4.618 10.720 1.00 0.00 ATOM 335 CA LYS 55 4.847 5.589 10.305 1.00 0.00 ATOM 336 CB LYS 55 6.224 4.932 10.190 1.00 0.00 ATOM 337 CG LYS 55 6.839 4.543 11.524 1.00 0.00 ATOM 338 CD LYS 55 8.204 3.900 11.337 1.00 0.00 ATOM 339 CE LYS 55 8.809 3.490 12.669 1.00 0.00 ATOM 340 NZ LYS 55 10.132 2.827 12.498 1.00 0.00 ATOM 341 O LYS 55 4.682 7.444 8.787 1.00 0.00 ATOM 342 C LYS 55 4.553 6.231 8.952 1.00 0.00 ATOM 343 N LEU 56 4.160 5.471 7.938 1.00 0.00 ATOM 344 CA LEU 56 3.776 6.040 6.687 1.00 0.00 ATOM 345 CB LEU 56 3.441 4.940 5.678 1.00 0.00 ATOM 346 CG LEU 56 3.027 5.404 4.281 1.00 0.00 ATOM 347 CD1 LEU 56 4.151 6.187 3.620 1.00 0.00 ATOM 348 CD2 LEU 56 2.695 4.212 3.395 1.00 0.00 ATOM 349 O LEU 56 2.579 7.991 6.258 1.00 0.00 ATOM 350 C LEU 56 2.557 6.920 6.861 1.00 0.00 ATOM 351 N SER 57 1.539 6.613 7.684 1.00 0.00 ATOM 352 CA SER 57 0.354 7.421 7.835 1.00 0.00 ATOM 353 CB SER 57 -0.668 6.713 8.727 1.00 0.00 ATOM 354 OG SER 57 -1.152 5.533 8.110 1.00 0.00 ATOM 355 O SER 57 0.178 9.805 8.049 1.00 0.00 ATOM 356 C SER 57 0.683 8.751 8.463 1.00 0.00 ATOM 357 N VAL 58 1.560 8.719 9.459 1.00 0.00 ATOM 358 CA VAL 58 2.070 9.953 10.036 1.00 0.00 ATOM 359 CB VAL 58 3.053 9.674 11.189 1.00 0.00 ATOM 360 CG1 VAL 58 3.723 10.962 11.641 1.00 0.00 ATOM 361 CG2 VAL 58 2.321 9.068 12.377 1.00 0.00 ATOM 362 O VAL 58 2.538 12.001 8.982 1.00 0.00 ATOM 363 C VAL 58 2.813 10.812 9.034 1.00 0.00 ATOM 364 N VAL 59 3.716 10.297 8.194 1.00 0.00 ATOM 365 CA VAL 59 4.443 11.129 7.249 1.00 0.00 ATOM 366 CB VAL 59 5.522 10.324 6.503 1.00 0.00 ATOM 367 CG1 VAL 59 6.137 11.161 5.391 1.00 0.00 ATOM 368 CG2 VAL 59 6.630 9.904 7.457 1.00 0.00 ATOM 369 O VAL 59 3.768 12.826 5.728 1.00 0.00 ATOM 370 C VAL 59 3.542 11.732 6.198 1.00 0.00 ATOM 371 N ILE 60 2.567 10.970 5.754 1.00 0.00 ATOM 372 CA ILE 60 1.705 11.346 4.678 1.00 0.00 ATOM 373 CB ILE 60 1.159 10.112 3.934 1.00 0.00 ATOM 374 CG1 ILE 60 0.273 9.279 4.863 1.00 0.00 ATOM 375 CG2 ILE 60 2.303 9.236 3.446 1.00 0.00 ATOM 376 CD1 ILE 60 -0.469 8.164 4.159 1.00 0.00 ATOM 377 O ILE 60 -0.293 12.534 4.352 1.00 0.00 ATOM 378 C ILE 60 0.522 12.134 5.168 1.00 0.00 ATOM 379 N GLY 61 0.339 12.302 6.473 1.00 0.00 ATOM 380 CA GLY 61 -0.698 13.128 7.060 1.00 0.00 ATOM 381 O GLY 61 -3.052 13.219 6.588 1.00 0.00 ATOM 382 C GLY 61 -2.062 12.518 6.818 1.00 0.00 ATOM 383 N SER 62 -2.192 11.185 6.860 1.00 0.00 ATOM 384 CA SER 62 -3.501 10.582 6.668 1.00 0.00 ATOM 385 CB SER 62 -3.567 9.859 5.321 1.00 0.00 ATOM 386 OG SER 62 -3.320 10.752 4.250 1.00 0.00 ATOM 387 O SER 62 -2.707 9.381 8.588 1.00 0.00 ATOM 388 C SER 62 -3.654 9.612 7.822 1.00 0.00 ATOM 389 N SER 63 -4.842 9.069 7.997 1.00 0.00 ATOM 390 CA SER 63 -5.047 8.055 8.999 1.00 0.00 ATOM 391 CB SER 63 -6.503 8.051 9.468 1.00 0.00 ATOM 392 OG SER 63 -6.832 9.266 10.118 1.00 0.00 ATOM 393 O SER 63 -4.828 6.559 7.147 1.00 0.00 ATOM 394 C SER 63 -4.695 6.704 8.355 1.00 0.00 ATOM 395 N PRO 64 -4.271 5.666 9.089 1.00 0.00 ATOM 396 CA PRO 64 -3.950 4.340 8.563 1.00 0.00 ATOM 397 CB PRO 64 -3.548 3.538 9.803 1.00 0.00 ATOM 398 CG PRO 64 -3.017 4.559 10.752 1.00 0.00 ATOM 399 CD PRO 64 -3.884 5.774 10.585 1.00 0.00 ATOM 400 O PRO 64 -5.076 3.184 6.815 1.00 0.00 ATOM 401 C PRO 64 -5.156 3.762 7.885 1.00 0.00 ATOM 402 N GLN 65 -6.316 3.979 8.463 1.00 0.00 ATOM 403 CA GLN 65 -7.537 3.510 7.843 1.00 0.00 ATOM 404 CB GLN 65 -8.750 3.893 8.691 1.00 0.00 ATOM 405 CG GLN 65 -8.987 5.391 8.796 1.00 0.00 ATOM 406 CD GLN 65 -10.161 5.734 9.692 1.00 0.00 ATOM 407 OE1 GLN 65 -10.857 4.847 10.186 1.00 0.00 ATOM 408 NE2 GLN 65 -10.384 7.025 9.906 1.00 0.00 ATOM 409 O GLN 65 -8.647 3.452 5.731 1.00 0.00 ATOM 410 C GLN 65 -7.845 4.036 6.456 1.00 0.00 ATOM 414 N LEU 68 -7.884 -0.263 6.353 1.00 0.00 ATOM 415 CA LEU 68 -8.867 -0.523 7.406 1.00 0.00 ATOM 416 CB LEU 68 -10.240 -0.815 6.798 1.00 0.00 ATOM 417 CG LEU 68 -10.950 0.363 6.128 1.00 0.00 ATOM 418 CD1 LEU 68 -12.208 -0.104 5.412 1.00 0.00 ATOM 419 CD2 LEU 68 -11.349 1.406 7.160 1.00 0.00 ATOM 420 O LEU 68 -8.747 -1.701 9.533 1.00 0.00 ATOM 421 C LEU 68 -8.528 -1.726 8.313 1.00 0.00 ATOM 422 N ASN 69 -7.979 -2.801 7.756 1.00 0.00 ATOM 423 CA ASN 69 -7.669 -3.943 8.566 1.00 0.00 ATOM 424 CB ASN 69 -7.330 -5.148 7.685 1.00 0.00 ATOM 425 CG ASN 69 -8.550 -5.730 7.000 1.00 0.00 ATOM 426 ND2 ASN 69 -8.325 -6.466 5.919 1.00 0.00 ATOM 427 OD1 ASN 69 -9.680 -5.520 7.440 1.00 0.00 ATOM 428 O ASN 69 -6.546 -4.094 10.657 1.00 0.00 ATOM 429 C ASN 69 -6.482 -3.703 9.482 1.00 0.00 ATOM 430 N LEU 70 -5.408 -3.024 9.033 1.00 0.00 ATOM 431 CA LEU 70 -4.271 -2.760 9.914 1.00 0.00 ATOM 432 CB LEU 70 -3.094 -2.197 9.115 1.00 0.00 ATOM 433 CG LEU 70 -2.408 -3.160 8.146 1.00 0.00 ATOM 434 CD1 LEU 70 -1.383 -2.426 7.295 1.00 0.00 ATOM 435 CD2 LEU 70 -1.694 -4.266 8.903 1.00 0.00 ATOM 436 O LEU 70 -4.364 -1.865 12.104 1.00 0.00 ATOM 437 C LEU 70 -4.738 -1.764 10.932 1.00 0.00 ATOM 438 N GLN 71 -5.581 -0.818 10.567 1.00 0.00 ATOM 439 CA GLN 71 -6.103 0.096 11.551 1.00 0.00 ATOM 440 CB GLN 71 -6.994 1.148 10.887 1.00 0.00 ATOM 441 CG GLN 71 -7.457 2.251 11.825 1.00 0.00 ATOM 442 CD GLN 71 -6.304 3.068 12.376 1.00 0.00 ATOM 443 OE1 GLN 71 -5.399 3.459 11.637 1.00 0.00 ATOM 444 NE2 GLN 71 -6.335 3.331 13.676 1.00 0.00 ATOM 445 O GLN 71 -6.930 -0.296 13.788 1.00 0.00 ATOM 446 C GLN 71 -6.941 -0.653 12.601 1.00 0.00 ATOM 447 N ASN 72 -7.649 -1.735 12.219 1.00 0.00 ATOM 448 CA ASN 72 -8.448 -2.561 13.129 1.00 0.00 ATOM 449 CB ASN 72 -9.207 -3.636 12.350 1.00 0.00 ATOM 450 CG ASN 72 -10.365 -3.071 11.554 1.00 0.00 ATOM 451 ND2 ASN 72 -10.817 -3.821 10.554 1.00 0.00 ATOM 452 OD1 ASN 72 -10.848 -1.974 11.835 1.00 0.00 ATOM 453 O ASN 72 -7.786 -3.239 15.341 1.00 0.00 ATOM 454 C ASN 72 -7.537 -3.231 14.132 1.00 0.00 ATOM 455 N ALA 73 -6.417 -3.715 13.601 1.00 0.00 ATOM 456 CA ALA 73 -5.412 -4.384 14.381 1.00 0.00 ATOM 457 CB ALA 73 -4.316 -4.927 13.479 1.00 0.00 ATOM 458 O ALA 73 -4.694 -3.811 16.561 1.00 0.00 ATOM 459 C ALA 73 -4.779 -3.453 15.373 1.00 0.00 ATOM 460 N TRP 74 -4.359 -2.259 14.910 1.00 0.00 ATOM 461 CA TRP 74 -3.773 -1.275 15.802 1.00 0.00 ATOM 462 CB TRP 74 -3.410 -0.003 15.033 1.00 0.00 ATOM 463 CG TRP 74 -2.784 1.057 15.887 1.00 0.00 ATOM 464 CD1 TRP 74 -1.462 1.175 16.209 1.00 0.00 ATOM 465 CD2 TRP 74 -3.452 2.149 16.528 1.00 0.00 ATOM 466 CE2 TRP 74 -2.474 2.887 17.222 1.00 0.00 ATOM 467 CE3 TRP 74 -4.783 2.574 16.584 1.00 0.00 ATOM 468 NE1 TRP 74 -1.266 2.272 17.011 1.00 0.00 ATOM 469 CZ2 TRP 74 -2.784 4.028 17.961 1.00 0.00 ATOM 470 CZ3 TRP 74 -5.086 3.705 17.320 1.00 0.00 ATOM 471 CH2 TRP 74 -4.094 4.420 17.998 1.00 0.00 ATOM 472 O TRP 74 -4.292 -0.672 18.053 1.00 0.00 ATOM 473 C TRP 74 -4.730 -0.888 16.913 1.00 0.00 ATOM 474 N SER 75 -6.022 -0.767 16.618 1.00 0.00 ATOM 475 CA SER 75 -6.974 -0.490 17.666 1.00 0.00 ATOM 476 CB SER 75 -8.353 -0.191 17.073 1.00 0.00 ATOM 477 OG SER 75 -8.335 1.010 16.321 1.00 0.00 ATOM 478 O SER 75 -7.244 -1.417 19.815 1.00 0.00 ATOM 479 C SER 75 -7.120 -1.675 18.620 1.00 0.00 ATOM 480 N LEU 76 -7.158 -2.942 18.211 1.00 0.00 ATOM 481 CA LEU 76 -7.205 -4.051 19.158 1.00 0.00 ATOM 482 CB LEU 76 -7.178 -5.390 18.417 1.00 0.00 ATOM 483 CG LEU 76 -7.206 -6.648 19.290 1.00 0.00 ATOM 484 CD1 LEU 76 -8.487 -6.707 20.106 1.00 0.00 ATOM 485 CD2 LEU 76 -7.133 -7.898 18.428 1.00 0.00 ATOM 486 O LEU 76 -6.253 -4.137 21.331 1.00 0.00 ATOM 487 C LEU 76 -6.054 -4.065 20.125 1.00 0.00 ATOM 488 N ALA 77 -4.827 -3.883 19.654 1.00 0.00 ATOM 489 CA ALA 77 -3.665 -3.852 20.534 1.00 0.00 ATOM 490 CB ALA 77 -2.394 -3.641 19.725 1.00 0.00 ATOM 491 O ALA 77 -3.346 -2.874 22.702 1.00 0.00 ATOM 492 C ALA 77 -3.759 -2.728 21.556 1.00 0.00 ATOM 493 N GLU 78 -4.350 -1.591 21.196 1.00 0.00 ATOM 494 CA GLU 78 -4.524 -0.473 22.100 1.00 0.00 ATOM 495 CB GLU 78 -5.029 0.756 21.342 1.00 0.00 ATOM 496 CG GLU 78 -4.008 1.363 20.393 1.00 0.00 ATOM 497 CD GLU 78 -2.733 1.784 21.100 1.00 0.00 ATOM 498 OE1 GLU 78 -2.828 2.523 22.102 1.00 0.00 ATOM 499 OE2 GLU 78 -1.642 1.376 20.651 1.00 0.00 ATOM 500 O GLU 78 -5.427 -0.275 24.286 1.00 0.00 ATOM 501 C GLU 78 -5.532 -0.821 23.182 1.00 0.00 ATOM 502 N ALA 79 -6.507 -1.694 22.920 1.00 0.00 ATOM 503 CA ALA 79 -7.405 -2.135 23.961 1.00 0.00 ATOM 504 CB ALA 79 -8.385 -3.162 23.416 1.00 0.00 ATOM 505 O ALA 79 -6.991 -2.704 26.230 1.00 0.00 ATOM 506 C ALA 79 -6.568 -2.764 25.080 1.00 0.00 TER END