PFRMAT TS TARGET T0312 AUTHOR SAM_T06_server REMARK 6 REMARK 6 T0312 model 4 Fri Jun 2 15:28:06 2006 METHOD The SAM-T06 server uses methods similar to SAM_T04 in CASP6 and METHOD the SAM-T02 method in CASP5. METHOD METHOD We start with a fully automated method: METHOD METHOD Use the SAM-T2K and SAM-T04 methods for finding homologs of the METHOD target and aligning them. METHOD METHOD Make local structure predictions using neural nets and the METHOD multiple alignments. Different neural nets are used for the METHOD SAM-T2K alignments and the SAM-T04 alignments. METHOD We currently use 8 local-structure alphabets: METHOD DSSP METHOD STRIDE METHOD STR2 an extended version of DSSP that splits the beta strands METHOD into multiple classes (parallel/antiparallel/mixed, METHOD edge/center) METHOD ALPHA an discretization of the alpha torsion angle: METHOD CA(i-i), CA(i), CA(i+1), CA(i+2) METHOD BYS a discretization of Ramachandran plots, due to Bystroff METHOD CB_burial_14_7 a 7-state discretization of the number of C_beta METHOD atoms in a 14 Angstrom radius sphere around the C_beta. METHOD near-backbone-11 an 11-state discretization of the number of METHOD residues (represented by near-backbone points) in a METHOD 9.65 Angstrom radius sphere around the sidechain proxy METHOD spot for the residue. METHOD DSSP_EHL2 CASP's collapse of the DSSP alphabet METHOD DSSP_EHL2 is not predicted directly by a METHOD neural net, but is computed as a weighted METHOD average of the other backbone alphabet predictions. METHOD METHOD We make 2-track HMMs with each alphabet (1.0 amino acid + 0.3 local structure) METHOD and use them to score a template library of 6400 (t04) or 9900 (t2k) templates METHOD We also used a single-track HMM to score not just the template METHOD library, but a non-redundant copy of the entire PDB. METHOD METHOD We also made a few 3-track HMMs (AA, str2, CB_burial_14_7 and METHOD AA, str2, near-backbone-11) for finding and aligning more remote METHOD homologs. METHOD METHOD One-track HMMs built from the template library multiple alignments METHOD were used to score the target sequence (for early targets, only METHOD t2k template library was searched this way). METHOD METHOD All the logs of e-values were combined in a weighted average (with METHOD rather arbitrary weights, since we did not have time to METHOD optimize them), and the best templates ranked. Ranking was METHOD separate for predictions from the t2k and t04 multiple alignments. METHOD METHOD Alignments of the target to the top templates were made using METHOD several different alignment methods (mainly using the SAM hmmscore METHOD program, but a few alignments were made with Bob Edgar's MUSCLE METHOD profile-profile aligner). METHOD METHOD Generate fragments (short 9-residue alignments for each position) METHOD using SAM's "fragfinder" program and the 3-track HMM. METHOD METHOD Then the "undertaker" program (named because it optimizes burial) METHOD is used to try to combine the alignments and the fragments into METHOD a consistent 3D model. No single alignment or parent template METHOD was used, though in many cases one had much more influence than METHOD the others. The alignment scores were not passed to undertaker, METHOD but were used only to pick the set of alignments and fragments METHOD that undertaker would see. Helix and strand constraints METHOD generated from the secondary-structure predictions are passed to METHOD undertaker to use in the cost function. METHOD METHOD One important change in this server over previous methods is that METHOD sheet constraints are extracted from the top few alignments and METHOD passed to undertaker. METHOD ------------- MODEL 4 PARENT N/A ATOM 2 N GLU 5 5.941 -1.686 -0.078 1.00 0.00 ATOM 3 CA GLU 5 6.289 -0.279 -0.203 1.00 0.00 ATOM 4 CB GLU 5 5.484 0.373 -1.330 1.00 0.00 ATOM 5 CG GLU 5 5.857 1.822 -1.598 1.00 0.00 ATOM 6 CD GLU 5 5.058 2.427 -2.736 1.00 0.00 ATOM 7 OE1 GLU 5 4.243 1.699 -3.342 1.00 0.00 ATOM 8 OE2 GLU 5 5.246 3.628 -3.022 1.00 0.00 ATOM 9 O GLU 5 4.813 0.622 1.463 1.00 0.00 ATOM 10 C GLU 5 5.978 0.438 1.112 1.00 0.00 ATOM 11 N PHE 6 7.040 0.822 1.805 1.00 0.00 ATOM 12 CA PHE 6 6.895 1.515 3.074 1.00 0.00 ATOM 13 CB PHE 6 8.159 1.353 3.921 1.00 0.00 ATOM 14 CG PHE 6 8.342 -0.031 4.477 1.00 0.00 ATOM 15 CD1 PHE 6 9.150 -0.950 3.833 1.00 0.00 ATOM 16 CD2 PHE 6 7.705 -0.412 5.646 1.00 0.00 ATOM 17 CE1 PHE 6 9.318 -2.224 4.344 1.00 0.00 ATOM 18 CE2 PHE 6 7.874 -1.685 6.157 1.00 0.00 ATOM 19 CZ PHE 6 8.675 -2.589 5.513 1.00 0.00 ATOM 20 O PHE 6 7.389 3.627 2.044 1.00 0.00 ATOM 21 C PHE 6 6.658 3.004 2.813 1.00 0.00 ATOM 22 N GLU 7 5.608 3.546 3.486 1.00 0.00 ATOM 23 CA GLU 7 5.266 4.949 3.334 1.00 0.00 ATOM 24 CB GLU 7 3.863 5.221 3.881 1.00 0.00 ATOM 25 CG GLU 7 2.748 4.561 3.086 1.00 0.00 ATOM 26 CD GLU 7 1.380 4.794 3.697 1.00 0.00 ATOM 27 OE1 GLU 7 1.307 5.452 4.756 1.00 0.00 ATOM 28 OE2 GLU 7 0.381 4.319 3.116 1.00 0.00 ATOM 29 O GLU 7 6.218 7.064 3.962 1.00 0.00 ATOM 30 C GLU 7 6.253 5.840 4.091 1.00 0.00 ATOM 31 N VAL 8 7.112 5.191 4.864 1.00 0.00 ATOM 32 CA VAL 8 8.108 5.908 5.641 1.00 0.00 ATOM 33 CB VAL 8 8.651 5.045 6.796 1.00 0.00 ATOM 34 CG1 VAL 8 7.525 4.646 7.739 1.00 0.00 ATOM 35 CG2 VAL 8 9.299 3.780 6.256 1.00 0.00 ATOM 36 O VAL 8 10.261 6.873 5.193 1.00 0.00 ATOM 37 C VAL 8 9.277 6.295 4.733 1.00 0.00 ATOM 38 N GLY 9 9.130 5.961 3.460 1.00 0.00 ATOM 39 CA GLY 9 10.161 6.265 2.483 1.00 0.00 ATOM 40 O GLY 9 12.170 5.203 1.707 1.00 0.00 ATOM 41 C GLY 9 11.082 5.063 2.263 1.00 0.00 ATOM 42 N LYS 10 10.611 3.909 2.712 1.00 0.00 ATOM 43 CA LYS 10 11.378 2.683 2.572 1.00 0.00 ATOM 44 CB LYS 10 11.540 1.994 3.929 1.00 0.00 ATOM 45 CG LYS 10 12.348 2.793 4.939 1.00 0.00 ATOM 46 CD LYS 10 12.487 2.041 6.252 1.00 0.00 ATOM 47 CE LYS 10 13.325 2.825 7.249 1.00 0.00 ATOM 48 NZ LYS 10 13.554 2.059 8.506 1.00 0.00 ATOM 49 O LYS 10 9.580 1.231 1.920 1.00 0.00 ATOM 50 C LYS 10 10.669 1.719 1.619 1.00 0.00 ATOM 51 N GLY 11 11.316 1.473 0.488 1.00 0.00 ATOM 52 CA GLY 11 10.760 0.576 -0.510 1.00 0.00 ATOM 53 O GLY 11 12.759 -0.684 -0.941 1.00 0.00 ATOM 54 C GLY 11 11.582 -0.713 -0.583 1.00 0.00 ATOM 55 N PHE 12 10.930 -1.813 -0.236 1.00 0.00 ATOM 56 CA PHE 12 11.585 -3.110 -0.257 1.00 0.00 ATOM 57 CB PHE 12 12.003 -3.522 1.156 1.00 0.00 ATOM 58 CG PHE 12 12.982 -2.582 1.798 1.00 0.00 ATOM 59 CD1 PHE 12 12.543 -1.543 2.598 1.00 0.00 ATOM 60 CD2 PHE 12 14.343 -2.739 1.603 1.00 0.00 ATOM 61 CE1 PHE 12 13.444 -0.677 3.189 1.00 0.00 ATOM 62 CE2 PHE 12 15.244 -1.872 2.194 1.00 0.00 ATOM 63 CZ PHE 12 14.800 -0.845 2.985 1.00 0.00 ATOM 64 O PHE 12 9.440 -4.161 -0.493 1.00 0.00 ATOM 65 C PHE 12 10.626 -4.160 -0.818 1.00 0.00 ATOM 66 N LEU 13 11.175 -5.032 -1.652 1.00 0.00 ATOM 67 CA LEU 13 10.383 -6.087 -2.261 1.00 0.00 ATOM 68 CB LEU 13 10.435 -5.983 -3.787 1.00 0.00 ATOM 69 CG LEU 13 9.898 -4.686 -4.398 1.00 0.00 ATOM 70 CD1 LEU 13 10.132 -4.662 -5.900 1.00 0.00 ATOM 71 CD2 LEU 13 8.404 -4.553 -4.146 1.00 0.00 ATOM 72 O LEU 13 12.120 -7.708 -1.917 1.00 0.00 ATOM 73 C LEU 13 10.917 -7.460 -1.851 1.00 0.00 ATOM 74 N LEU 14 9.996 -8.317 -1.434 1.00 0.00 ATOM 75 CA LEU 14 10.359 -9.659 -1.013 1.00 0.00 ATOM 76 CB LEU 14 9.963 -9.888 0.448 1.00 0.00 ATOM 77 CG LEU 14 10.613 -8.964 1.479 1.00 0.00 ATOM 78 CD1 LEU 14 10.034 -9.212 2.864 1.00 0.00 ATOM 79 CD2 LEU 14 12.114 -9.203 1.543 1.00 0.00 ATOM 80 O LEU 14 8.411 -10.632 -2.023 1.00 0.00 ATOM 81 C LEU 14 9.633 -10.679 -1.891 1.00 0.00 ATOM 82 N ARG 15 10.416 -11.578 -2.471 1.00 0.00 ATOM 83 CA ARG 15 9.864 -12.607 -3.333 1.00 0.00 ATOM 84 CB ARG 15 10.927 -13.117 -4.307 1.00 0.00 ATOM 85 CG ARG 15 10.411 -14.135 -5.313 1.00 0.00 ATOM 86 CD ARG 15 11.511 -14.581 -6.262 1.00 0.00 ATOM 87 NE ARG 15 11.028 -15.548 -7.244 1.00 0.00 ATOM 88 CZ ARG 15 11.813 -16.211 -8.087 1.00 0.00 ATOM 89 NH1 ARG 15 11.284 -17.071 -8.946 1.00 0.00 ATOM 90 NH2 ARG 15 13.124 -16.014 -8.068 1.00 0.00 ATOM 91 O ARG 15 10.158 -14.409 -1.777 1.00 0.00 ATOM 92 C ARG 15 9.371 -13.775 -2.477 1.00 0.00 ATOM 93 N LEU 16 8.072 -14.022 -2.559 1.00 0.00 ATOM 94 CA LEU 16 7.466 -15.102 -1.800 1.00 0.00 ATOM 95 CB LEU 16 6.431 -14.551 -0.817 1.00 0.00 ATOM 96 CG LEU 16 6.946 -13.549 0.218 1.00 0.00 ATOM 97 CD1 LEU 16 5.794 -12.970 1.024 1.00 0.00 ATOM 98 CD2 LEU 16 7.912 -14.220 1.183 1.00 0.00 ATOM 99 O LEU 16 6.609 -15.767 -3.942 1.00 0.00 ATOM 100 C LEU 16 6.776 -16.071 -2.762 1.00 0.00 ATOM 101 N ASP 17 6.393 -17.219 -2.222 1.00 0.00 ATOM 102 CA ASP 17 5.724 -18.234 -3.017 1.00 0.00 ATOM 103 CB ASP 17 6.046 -19.632 -2.483 1.00 0.00 ATOM 104 CG ASP 17 7.471 -20.054 -2.777 1.00 0.00 ATOM 105 OD1 ASP 17 8.145 -19.361 -3.569 1.00 0.00 ATOM 106 OD2 ASP 17 7.916 -21.077 -2.215 1.00 0.00 ATOM 107 O ASP 17 3.680 -17.470 -2.014 1.00 0.00 ATOM 108 C ASP 17 4.208 -18.035 -2.971 1.00 0.00 ATOM 109 N TYR 18 3.531 -18.524 -4.045 1.00 0.00 ATOM 110 CA TYR 18 2.086 -18.405 -4.136 1.00 0.00 ATOM 111 CB TYR 18 1.614 -18.685 -5.565 1.00 0.00 ATOM 112 CG TYR 18 1.982 -17.602 -6.554 1.00 0.00 ATOM 113 CD1 TYR 18 3.071 -17.754 -7.404 1.00 0.00 ATOM 114 CD2 TYR 18 1.242 -16.429 -6.634 1.00 0.00 ATOM 115 CE1 TYR 18 3.415 -16.770 -8.310 1.00 0.00 ATOM 116 CE2 TYR 18 1.571 -15.434 -7.534 1.00 0.00 ATOM 117 CZ TYR 18 2.667 -15.613 -8.376 1.00 0.00 ATOM 118 OH TYR 18 3.008 -14.632 -9.278 1.00 0.00 ATOM 119 O TYR 18 0.191 -19.305 -2.968 1.00 0.00 ATOM 120 C TYR 18 1.394 -19.401 -3.203 1.00 0.00 ATOM 121 N GLY 19 2.186 -20.336 -2.696 1.00 0.00 ATOM 122 CA GLY 19 1.664 -21.350 -1.793 1.00 0.00 ATOM 123 O GLY 19 1.847 -21.843 0.548 1.00 0.00 ATOM 124 C GLY 19 2.192 -21.109 -0.378 1.00 0.00 ATOM 125 N LYS 20 3.018 -20.081 -0.254 1.00 0.00 ATOM 126 CA LYS 20 3.596 -19.736 1.033 1.00 0.00 ATOM 127 CB LYS 20 4.958 -19.067 0.846 1.00 0.00 ATOM 128 CG LYS 20 5.636 -18.664 2.146 1.00 0.00 ATOM 129 CD LYS 20 7.011 -18.070 1.891 1.00 0.00 ATOM 130 CE LYS 20 7.686 -17.662 3.190 1.00 0.00 ATOM 131 NZ LYS 20 9.065 -17.150 2.963 1.00 0.00 ATOM 132 O LYS 20 2.100 -17.865 1.191 1.00 0.00 ATOM 133 C LYS 20 2.680 -18.771 1.789 1.00 0.00 ATOM 134 N ASP 21 2.577 -18.998 3.089 1.00 0.00 ATOM 135 CA ASP 21 1.742 -18.160 3.932 1.00 0.00 ATOM 136 CB ASP 21 1.449 -18.859 5.261 1.00 0.00 ATOM 137 CG ASP 21 0.496 -18.071 6.137 1.00 0.00 ATOM 138 OD1 ASP 21 0.118 -16.948 5.742 1.00 0.00 ATOM 139 OD2 ASP 21 0.126 -18.576 7.218 1.00 0.00 ATOM 140 O ASP 21 3.627 -16.840 4.615 1.00 0.00 ATOM 141 C ASP 21 2.465 -16.842 4.210 1.00 0.00 ATOM 142 N LEU 22 1.749 -15.751 3.982 1.00 0.00 ATOM 143 CA LEU 22 2.308 -14.429 4.204 1.00 0.00 ATOM 144 CB LEU 22 1.258 -13.350 3.929 1.00 0.00 ATOM 145 CG LEU 22 0.806 -13.199 2.474 1.00 0.00 ATOM 146 CD1 LEU 22 -0.329 -12.194 2.365 1.00 0.00 ATOM 147 CD2 LEU 22 1.955 -12.717 1.601 1.00 0.00 ATOM 148 O LEU 22 3.610 -13.470 5.979 1.00 0.00 ATOM 149 C LEU 22 2.774 -14.311 5.657 1.00 0.00 ATOM 150 N VAL 23 2.211 -15.171 6.494 1.00 0.00 ATOM 151 CA VAL 23 2.559 -15.174 7.905 1.00 0.00 ATOM 152 CB VAL 23 1.726 -16.206 8.688 1.00 0.00 ATOM 153 CG1 VAL 23 2.240 -16.334 10.114 1.00 0.00 ATOM 154 CG2 VAL 23 0.266 -15.783 8.739 1.00 0.00 ATOM 155 O VAL 23 4.758 -14.880 8.820 1.00 0.00 ATOM 156 C VAL 23 4.039 -15.526 8.060 1.00 0.00 ATOM 157 N ARG 24 4.452 -16.551 7.328 1.00 0.00 ATOM 158 CA ARG 24 5.834 -16.996 7.375 1.00 0.00 ATOM 159 CB ARG 24 6.002 -18.300 6.593 1.00 0.00 ATOM 160 CG ARG 24 5.374 -19.511 7.262 1.00 0.00 ATOM 161 CD ARG 24 5.511 -20.752 6.394 1.00 0.00 ATOM 162 NE ARG 24 4.906 -21.927 7.021 1.00 0.00 ATOM 163 CZ ARG 24 4.818 -23.120 6.443 1.00 0.00 ATOM 164 NH1 ARG 24 4.252 -24.130 7.089 1.00 0.00 ATOM 165 NH2 ARG 24 5.297 -23.301 5.221 1.00 0.00 ATOM 166 O ARG 24 7.852 -15.701 7.264 1.00 0.00 ATOM 167 C ARG 24 6.753 -15.938 6.762 1.00 0.00 ATOM 168 N GLN 25 6.270 -15.330 5.690 1.00 0.00 ATOM 169 CA GLN 25 7.037 -14.303 5.004 1.00 0.00 ATOM 170 CB GLN 25 6.405 -13.977 3.648 1.00 0.00 ATOM 171 CG GLN 25 7.187 -12.966 2.826 1.00 0.00 ATOM 172 CD GLN 25 8.566 -13.467 2.446 1.00 0.00 ATOM 173 OE1 GLN 25 8.725 -14.605 2.004 1.00 0.00 ATOM 174 NE2 GLN 25 9.571 -12.615 2.618 1.00 0.00 ATOM 175 O GLN 25 8.125 -12.468 6.105 1.00 0.00 ATOM 176 C GLN 25 7.062 -13.035 5.859 1.00 0.00 ATOM 177 N ILE 26 5.877 -12.627 6.291 1.00 0.00 ATOM 178 CA ILE 26 5.750 -11.437 7.116 1.00 0.00 ATOM 179 CB ILE 26 4.277 -11.141 7.457 1.00 0.00 ATOM 180 CG1 ILE 26 3.490 -10.817 6.186 1.00 0.00 ATOM 181 CG2 ILE 26 4.178 -9.953 8.402 1.00 0.00 ATOM 182 CD1 ILE 26 3.993 -9.594 5.451 1.00 0.00 ATOM 183 O ILE 26 7.199 -10.731 8.896 1.00 0.00 ATOM 184 C ILE 26 6.521 -11.642 8.421 1.00 0.00 ATOM 185 N GLU 27 6.391 -12.841 8.966 1.00 0.00 ATOM 186 CA GLU 27 7.066 -13.177 10.208 1.00 0.00 ATOM 187 CB GLU 27 6.613 -14.550 10.710 1.00 0.00 ATOM 188 CG GLU 27 7.223 -14.955 12.043 1.00 0.00 ATOM 189 CD GLU 27 6.708 -16.293 12.535 1.00 0.00 ATOM 190 OE1 GLU 27 5.867 -16.898 11.839 1.00 0.00 ATOM 191 OE2 GLU 27 7.147 -16.734 13.619 1.00 0.00 ATOM 192 O GLU 27 9.343 -12.787 10.863 1.00 0.00 ATOM 193 C GLU 27 8.581 -13.212 9.996 1.00 0.00 ATOM 194 N GLU 28 8.973 -13.721 8.837 1.00 0.00 ATOM 195 CA GLU 28 10.383 -13.816 8.499 1.00 0.00 ATOM 196 CB GLU 28 10.570 -14.586 7.190 1.00 0.00 ATOM 197 CG GLU 28 12.022 -14.789 6.790 1.00 0.00 ATOM 198 CD GLU 28 12.168 -15.584 5.508 1.00 0.00 ATOM 199 OE1 GLU 28 11.132 -15.975 4.930 1.00 0.00 ATOM 200 OE2 GLU 28 13.317 -15.816 5.081 1.00 0.00 ATOM 201 O GLU 28 11.952 -12.063 8.977 1.00 0.00 ATOM 202 C GLU 28 10.960 -12.409 8.338 1.00 0.00 ATOM 203 N PHE 29 10.314 -11.635 7.477 1.00 0.00 ATOM 204 CA PHE 29 10.752 -10.272 7.222 1.00 0.00 ATOM 205 CB PHE 29 9.881 -9.623 6.145 1.00 0.00 ATOM 206 CG PHE 29 10.348 -8.258 5.728 1.00 0.00 ATOM 207 CD1 PHE 29 11.470 -8.107 4.931 1.00 0.00 ATOM 208 CD2 PHE 29 9.667 -7.124 6.134 1.00 0.00 ATOM 209 CE1 PHE 29 11.900 -6.851 4.549 1.00 0.00 ATOM 210 CE2 PHE 29 10.098 -5.867 5.753 1.00 0.00 ATOM 211 CZ PHE 29 11.209 -5.729 4.962 1.00 0.00 ATOM 212 O PHE 29 11.477 -8.549 8.729 1.00 0.00 ATOM 213 C PHE 29 10.652 -9.433 8.497 1.00 0.00 ATOM 214 N LEU 30 9.638 -9.740 9.292 1.00 0.00 ATOM 215 CA LEU 30 9.420 -9.025 10.538 1.00 0.00 ATOM 216 CB LEU 30 8.082 -9.426 11.161 1.00 0.00 ATOM 217 CG LEU 30 6.825 -8.970 10.416 1.00 0.00 ATOM 218 CD1 LEU 30 5.580 -9.584 11.037 1.00 0.00 ATOM 219 CD2 LEU 30 6.687 -7.456 10.472 1.00 0.00 ATOM 220 O LEU 30 11.017 -8.529 12.263 1.00 0.00 ATOM 221 C LEU 30 10.558 -9.378 11.500 1.00 0.00 ATOM 222 N GLU 31 10.980 -10.632 11.431 1.00 0.00 ATOM 223 CA GLU 31 12.055 -11.107 12.285 1.00 0.00 ATOM 224 CB GLU 31 12.242 -12.617 12.121 1.00 0.00 ATOM 225 CG GLU 31 13.308 -13.212 13.027 1.00 0.00 ATOM 226 CD GLU 31 13.442 -14.713 12.862 1.00 0.00 ATOM 227 OE1 GLU 31 12.701 -15.287 12.037 1.00 0.00 ATOM 228 OE2 GLU 31 14.287 -15.314 13.558 1.00 0.00 ATOM 229 O GLU 31 14.074 -9.911 12.797 1.00 0.00 ATOM 230 C GLU 31 13.368 -10.412 11.922 1.00 0.00 ATOM 231 N GLU 32 13.658 -10.404 10.630 1.00 0.00 ATOM 232 CA GLU 32 14.876 -9.780 10.139 1.00 0.00 ATOM 233 CB GLU 32 15.145 -10.194 8.692 1.00 0.00 ATOM 234 CG GLU 32 15.553 -11.650 8.528 1.00 0.00 ATOM 235 CD GLU 32 15.692 -12.056 7.075 1.00 0.00 ATOM 236 OE1 GLU 32 15.399 -11.221 6.193 1.00 0.00 ATOM 237 OE2 GLU 32 16.093 -13.210 6.816 1.00 0.00 ATOM 238 O GLU 32 15.720 -7.559 10.481 1.00 0.00 ATOM 239 C GLU 32 14.748 -8.256 10.192 1.00 0.00 ATOM 240 N LYS 33 13.544 -7.784 9.911 1.00 0.00 ATOM 241 CA LYS 33 13.276 -6.356 9.924 1.00 0.00 ATOM 242 CB LYS 33 12.242 -5.994 8.856 1.00 0.00 ATOM 243 CG LYS 33 12.678 -6.315 7.437 1.00 0.00 ATOM 244 CD LYS 33 13.904 -5.509 7.039 1.00 0.00 ATOM 245 CE LYS 33 14.315 -5.799 5.605 1.00 0.00 ATOM 246 NZ LYS 33 15.513 -5.013 5.201 1.00 0.00 ATOM 247 O LYS 33 12.221 -4.822 11.439 1.00 0.00 ATOM 248 C LYS 33 12.735 -5.930 11.290 1.00 0.00 ATOM 249 N GLY 34 12.866 -6.832 12.252 1.00 0.00 ATOM 250 CA GLY 34 12.395 -6.563 13.599 1.00 0.00 ATOM 251 O GLY 34 11.176 -4.518 13.909 1.00 0.00 ATOM 252 C GLY 34 11.142 -5.689 13.532 1.00 0.00 ATOM 253 N ILE 35 10.064 -6.290 13.049 1.00 0.00 ATOM 254 CA ILE 35 8.801 -5.580 12.927 1.00 0.00 ATOM 255 CB ILE 35 8.444 -5.316 11.453 1.00 0.00 ATOM 256 CG1 ILE 35 8.308 -6.637 10.693 1.00 0.00 ATOM 257 CG2 ILE 35 9.525 -4.482 10.783 1.00 0.00 ATOM 258 CD1 ILE 35 7.756 -6.481 9.292 1.00 0.00 ATOM 259 O ILE 35 7.768 -7.600 13.710 1.00 0.00 ATOM 260 C ILE 35 7.658 -6.386 13.546 1.00 0.00 ATOM 261 N HIS 36 6.587 -5.678 13.872 1.00 0.00 ATOM 262 CA HIS 36 5.424 -6.312 14.469 1.00 0.00 ATOM 263 CB HIS 36 5.203 -5.796 15.892 1.00 0.00 ATOM 264 CG HIS 36 6.336 -6.094 16.825 1.00 0.00 ATOM 265 CD2 HIS 36 7.494 -5.364 17.318 1.00 0.00 ATOM 266 ND1 HIS 36 6.475 -7.307 17.465 1.00 0.00 ATOM 267 CE1 HIS 36 7.580 -7.274 18.230 1.00 0.00 ATOM 268 NE2 HIS 36 8.196 -6.111 18.148 1.00 0.00 ATOM 269 O HIS 36 4.074 -4.907 13.067 1.00 0.00 ATOM 270 C HIS 36 4.187 -5.997 13.625 1.00 0.00 ATOM 274 N VAL 46 3.266 -6.995 13.556 1.00 0.00 ATOM 275 CA VAL 46 2.042 -6.835 12.792 1.00 0.00 ATOM 276 CB VAL 46 1.344 -8.187 12.553 1.00 0.00 ATOM 277 CG1 VAL 46 -0.022 -7.977 11.920 1.00 0.00 ATOM 278 CG2 VAL 46 2.176 -9.059 11.625 1.00 0.00 ATOM 279 O VAL 46 0.330 -5.155 12.894 1.00 0.00 ATOM 280 C VAL 46 1.054 -5.926 13.523 1.00 0.00 ATOM 281 N ARG 47 1.052 -6.048 14.843 1.00 0.00 ATOM 282 CA ARG 47 0.163 -5.246 15.668 1.00 0.00 ATOM 283 CB ARG 47 0.278 -5.658 17.136 1.00 0.00 ATOM 284 CG ARG 47 1.611 -5.303 17.777 1.00 0.00 ATOM 285 CD ARG 47 1.670 -5.773 19.223 1.00 0.00 ATOM 286 NE ARG 47 2.950 -5.450 19.849 1.00 0.00 ATOM 287 CZ ARG 47 4.083 -6.105 19.618 1.00 0.00 ATOM 288 NH1 ARG 47 5.199 -5.739 20.234 1.00 0.00 ATOM 289 NH2 ARG 47 4.098 -7.123 18.768 1.00 0.00 ATOM 290 O ARG 47 -0.196 -2.902 16.037 1.00 0.00 ATOM 291 C ARG 47 0.528 -3.765 15.544 1.00 0.00 ATOM 292 N SER 48 1.649 -3.519 14.883 1.00 0.00 ATOM 293 CA SER 48 2.118 -2.157 14.690 1.00 0.00 ATOM 294 CB SER 48 3.453 -1.943 15.405 1.00 0.00 ATOM 295 OG SER 48 4.453 -2.806 14.889 1.00 0.00 ATOM 296 O SER 48 2.663 -0.754 12.819 1.00 0.00 ATOM 297 C SER 48 2.313 -1.870 13.199 1.00 0.00 ATOM 298 N ALA 49 2.080 -2.899 12.395 1.00 0.00 ATOM 299 CA ALA 49 2.226 -2.772 10.956 1.00 0.00 ATOM 300 CB ALA 49 3.593 -3.271 10.516 1.00 0.00 ATOM 301 O ALA 49 0.842 -4.706 10.625 1.00 0.00 ATOM 302 C ALA 49 1.159 -3.587 10.222 1.00 0.00 ATOM 303 N VAL 50 0.634 -2.996 9.159 1.00 0.00 ATOM 304 CA VAL 50 -0.389 -3.654 8.366 1.00 0.00 ATOM 305 CB VAL 50 -1.766 -2.991 8.559 1.00 0.00 ATOM 306 CG1 VAL 50 -2.220 -3.118 10.005 1.00 0.00 ATOM 307 CG2 VAL 50 -1.701 -1.514 8.203 1.00 0.00 ATOM 308 O VAL 50 0.602 -2.599 6.451 1.00 0.00 ATOM 309 C VAL 50 -0.014 -3.571 6.885 1.00 0.00 ATOM 310 N ILE 51 -0.398 -4.605 6.151 1.00 0.00 ATOM 311 CA ILE 51 -0.109 -4.661 4.728 1.00 0.00 ATOM 312 CB ILE 51 0.783 -5.866 4.380 1.00 0.00 ATOM 313 CG1 ILE 51 2.082 -5.818 5.187 1.00 0.00 ATOM 314 CG2 ILE 51 1.133 -5.861 2.900 1.00 0.00 ATOM 315 CD1 ILE 51 2.940 -4.608 4.891 1.00 0.00 ATOM 316 O ILE 51 -2.299 -5.560 4.328 1.00 0.00 ATOM 317 C ILE 51 -1.421 -4.787 3.951 1.00 0.00 ATOM 318 N GLY 52 -1.512 -4.012 2.879 1.00 0.00 ATOM 319 CA GLY 52 -2.701 -4.026 2.044 1.00 0.00 ATOM 320 O GLY 52 -1.492 -2.844 0.341 1.00 0.00 ATOM 321 C GLY 52 -2.308 -3.727 0.597 1.00 0.00 ATOM 322 N TYR 53 -2.907 -4.482 -0.313 1.00 0.00 ATOM 323 CA TYR 53 -2.627 -4.311 -1.729 1.00 0.00 ATOM 324 CB TYR 53 -1.885 -5.531 -2.280 1.00 0.00 ATOM 325 CG TYR 53 -1.481 -5.397 -3.731 1.00 0.00 ATOM 326 CD1 TYR 53 -0.333 -4.700 -4.089 1.00 0.00 ATOM 327 CD2 TYR 53 -2.249 -5.968 -4.738 1.00 0.00 ATOM 328 CE1 TYR 53 0.043 -4.573 -5.412 1.00 0.00 ATOM 329 CE2 TYR 53 -1.887 -5.851 -6.067 1.00 0.00 ATOM 330 CZ TYR 53 -0.730 -5.146 -6.398 1.00 0.00 ATOM 331 OH TYR 53 -0.358 -5.022 -7.716 1.00 0.00 ATOM 332 O TYR 53 -4.726 -5.067 -2.616 1.00 0.00 ATOM 333 C TYR 53 -3.923 -4.140 -2.525 1.00 0.00 ATOM 337 N GLN 56 -4.086 -2.949 -3.082 1.00 0.00 ATOM 338 CA GLN 56 -5.269 -2.645 -3.868 1.00 0.00 ATOM 339 CB GLN 56 -5.385 -3.604 -5.054 1.00 0.00 ATOM 340 CG GLN 56 -4.309 -3.418 -6.112 1.00 0.00 ATOM 341 CD GLN 56 -4.405 -4.440 -7.227 1.00 0.00 ATOM 342 OE1 GLN 56 -5.224 -5.358 -7.172 1.00 0.00 ATOM 343 NE2 GLN 56 -3.568 -4.284 -8.245 1.00 0.00 ATOM 344 O GLN 56 -6.769 -1.960 -2.123 1.00 0.00 ATOM 345 C GLN 56 -6.526 -2.780 -3.007 1.00 0.00 ATOM 346 N GLU 57 -7.293 -3.821 -3.297 1.00 0.00 ATOM 347 CA GLU 57 -8.520 -4.074 -2.560 1.00 0.00 ATOM 348 CB GLU 57 -9.689 -4.285 -3.523 1.00 0.00 ATOM 349 CG GLU 57 -10.020 -3.071 -4.375 1.00 0.00 ATOM 350 CD GLU 57 -11.189 -3.315 -5.310 1.00 0.00 ATOM 351 OE1 GLU 57 -11.776 -4.416 -5.252 1.00 0.00 ATOM 352 OE2 GLU 57 -11.518 -2.406 -6.099 1.00 0.00 ATOM 353 O GLU 57 -9.360 -5.872 -1.208 1.00 0.00 ATOM 354 C GLU 57 -8.370 -5.326 -1.694 1.00 0.00 ATOM 358 N LYS 64 -7.125 -5.748 -1.528 1.00 0.00 ATOM 359 CA LYS 64 -6.834 -6.925 -0.730 1.00 0.00 ATOM 360 CB LYS 64 -6.145 -7.994 -1.582 1.00 0.00 ATOM 361 CG LYS 64 -7.023 -8.572 -2.680 1.00 0.00 ATOM 362 CD LYS 64 -6.307 -9.685 -3.428 1.00 0.00 ATOM 363 CE LYS 64 -7.171 -10.237 -4.551 1.00 0.00 ATOM 364 NZ LYS 64 -6.494 -11.349 -5.277 1.00 0.00 ATOM 365 O LYS 64 -4.858 -5.957 0.234 1.00 0.00 ATOM 366 C LYS 64 -5.909 -6.565 0.435 1.00 0.00 ATOM 367 N GLU 65 -6.334 -6.954 1.628 1.00 0.00 ATOM 368 CA GLU 65 -5.558 -6.679 2.825 1.00 0.00 ATOM 369 CB GLU 65 -6.453 -6.720 4.065 1.00 0.00 ATOM 370 CG GLU 65 -7.517 -5.637 4.099 1.00 0.00 ATOM 371 CD GLU 65 -8.363 -5.689 5.357 1.00 0.00 ATOM 372 OE1 GLU 65 -8.139 -6.599 6.184 1.00 0.00 ATOM 373 OE2 GLU 65 -9.245 -4.821 5.516 1.00 0.00 ATOM 374 O GLU 65 -4.686 -8.913 2.702 1.00 0.00 ATOM 375 C GLU 65 -4.458 -7.733 2.967 1.00 0.00 ATOM 376 N LEU 66 -3.290 -7.270 3.387 1.00 0.00 ATOM 377 CA LEU 66 -2.154 -8.158 3.568 1.00 0.00 ATOM 378 CB LEU 66 -0.953 -7.665 2.758 1.00 0.00 ATOM 379 CG LEU 66 -1.150 -7.574 1.244 1.00 0.00 ATOM 380 CD1 LEU 66 0.069 -6.952 0.580 1.00 0.00 ATOM 381 CD2 LEU 66 -1.364 -8.956 0.644 1.00 0.00 ATOM 382 O LEU 66 -1.409 -7.173 5.627 1.00 0.00 ATOM 383 C LEU 66 -1.773 -8.196 5.050 1.00 0.00 ATOM 384 N MET 67 -1.872 -9.388 5.622 1.00 0.00 ATOM 385 CA MET 67 -1.542 -9.572 7.025 1.00 0.00 ATOM 386 CB MET 67 -2.799 -9.461 7.890 1.00 0.00 ATOM 387 CG MET 67 -2.523 -9.431 9.385 1.00 0.00 ATOM 388 SD MET 67 -4.025 -9.258 10.366 1.00 0.00 ATOM 389 CE MET 67 -4.484 -7.568 9.989 1.00 0.00 ATOM 390 O MET 67 -0.240 -11.467 6.334 1.00 0.00 ATOM 391 C MET 67 -0.922 -10.958 7.220 1.00 0.00 TER END