PFRMAT AL TARGET T0315 AUTHOR gtg REMARK REMARK --a8Wt8u1KmwUX3Y2C REMARK Content-Type: text/plain; charset=us-ascii REMARK Content-Disposition: inline REMARK REMARK File attached. REMARK REMARK --a8Wt8u1KmwUX3Y2C REMARK Content-Type: text/plain; charset=us-ascii REMARK Content-Disposition: attachment; filename="T0315.al" REMARK REMARK Global Trace Graph (GTG) v2 used to find PDB templates REMARK SCORES 4589|10869|3019 METHOD GTG Deep-Search for transitive alignment of distantly-related proteins METHOD using a weighted Consistency-Motif score. Publication pending. METHOD The concepts of consistency and transitive alignment are described in METHOD detail in the publication: METHOD Heger A, Lappe M, Holm L (2003) Accurate detection of very sparse METHOD sequence motifs. RECOMB 2003: Proceedings of the 7th Annual International METHOD Conference on Research in Computational Biology, Eds Miller et al. METHOD Association for Computing Machinery, New York, NY. pp. 139-147. METHOD ------------- MODEL 1 PARENT 1j6o_A L 2 X 0 I 3 V 1 D 4 D 2 T 5 T 3 H 6 H 4 V 7 A 5 H 8 H 6 L 9 L 7 D 11 H 8 E 12 F 9 Q 13 H 10 Y 14 Q 11 D 15 F 12 D 16 N 17 D 17 A 18 L 18 V 19 S 19 I 20 E 20 S 21 V 21 S 22 I 22 F 23 T 23 E 24 R 24 E 25 A 25 N 26 R 26 N 27 V 30 I 28 D 31 E 29 R 32 F 30 M 33 V 31 F 34 V 32 V 35 N 33 V 36 V 34 G 37 G 35 F 38 V 36 N 39 N 37 K 40 L 38 S 41 E 39 T 42 D 40 I 43 S 41 E 44 K 42 R 45 K 43 A 46 S 44 M 47 L 45 K 48 D 46 L 49 L 47 I 50 S 48 D 51 K 49 E 52 T 50 Y 53 S 51 D 54 D 52 F 55 R 53 L 56 I 54 Y 57 F 55 G 58 C 56 I 59 S 57 I 60 V 58 G 61 G 59 W 62 V 60 H 63 H 61 P 64 P 62 V 65 H 63 D 66 D 64 A 67 A 65 I 68 K 66 D 69 E 67 F 70 V 68 T 71 P 69 E 72 E 70 E 73 D 71 H 74 F 72 L 75 I 73 E 76 E 74 W 77 H 75 I 78 L 76 E 79 E 77 S 80 K 78 L 81 F 79 A 82 A 80 Q 83 K 81 H 84 D 82 P 85 E 83 K 86 K 84 V 87 V 85 I 88 V 86 G 89 A 87 I 90 I 88 G 91 G 89 E 92 E 90 M 93 T 91 G 94 G 92 L 95 L 93 D 96 D 94 Y 97 F 95 H 98 F 96 W 99 R 97 D 100 N 98 K 101 I 99 S 102 S 100 P 103 P 101 A 104 A 102 D 105 E 103 V 106 V 104 Q 107 Q 105 K 108 K 106 E 109 R 107 V 110 V 108 F 111 F 109 R 112 V 110 K 113 E 111 Q 114 Q 112 I 115 I 113 A 116 E 114 L 117 L 115 A 118 A 116 K 119 G 117 R 120 K 118 L 121 L 119 K 122 N 120 L 123 L 121 P 124 P 122 I 125 L 123 I 126 V 124 I 127 V 125 H 128 H 126 N 129 I 127 R 130 R 128 E 131 D 129 A 132 A 130 T 133 Y 131 Q 134 S 132 D 135 E 133 C 136 A 134 I 137 Y 135 D 138 E 136 I 139 I 137 L 140 L 138 L 141 R 139 E 142 E 141 H 144 S 142 A 145 L 143 E 146 P 144 E 147 E 145 V 148 K 146 G 149 R 147 G 150 G 148 I 151 V 149 M 152 I 150 H 153 H 151 S 154 A 152 F 155 F 153 S 156 S 154 G 157 S 155 S 158 D 156 P 159 Y 157 E 160 E 158 I 161 W 159 A 162 A 160 D 163 K 161 I 164 K 162 V 165 F 163 T 166 I 164 N 167 D 165 L 169 L 166 N 170 G 167 F 171 F 168 Y 172 L 169 I 173 L 170 S 174 G 171 L 175 I 172 G 176 G 173 G 177 G 174 P 178 P 175 V 179 V 176 T 180 T 177 F 181 Y 178 K 182 P 179 N 183 K 180 A 184 N 181 K 185 E 182 Q 186 A 183 P 187 L 184 K 188 R 185 E 189 E 186 V 190 V 187 A 191 V 188 K 192 K 189 H 193 R 190 V 194 V 191 S 195 G 192 M 196 L 193 E 197 E 194 R 198 Y 195 L 199 I 196 L 200 V 197 V 201 L 198 E 202 E 199 T 203 T 200 D 204 D 201 A 205 C 202 P 206 P 203 Y 207 F 204 L 208 L 205 S 209 P 206 P 210 P 207 H 211 Q 208 P 212 P 209 Y 213 F 210 R 214 R 211 G 215 G 212 K 216 K 213 R 217 R 214 N 218 N 215 E 219 E 216 P 220 P 217 A 221 K 218 R 222 Y 219 V 223 L 220 T 224 K 221 L 225 Y 222 V 226 V 223 A 227 V 224 E 228 E 225 Q 229 T 226 I 230 I 227 A 231 S 228 E 232 Q 229 L 233 L 231 K 234 G 232 TER END