PFRMAT AL TARGET T0315 AUTHOR gtg REMARK Global Trace Graph (GTG) v2 used to find PDB templates REMARK SCORES 4302|9920|2898 METHOD GTG Deep-Search for transitive alignment of distantly-related proteins METHOD using a weighted Consistency-Motif score. Publication pending. METHOD The concepts of consistency and transitive alignment are described in METHOD detail in the publication: METHOD Heger A, Lappe M, Holm L (2003) Accurate detection of very sparse METHOD sequence motifs. RECOMB 2003: Proceedings of the 7th Annual International METHOD Conference on Research in Computational Biology, Eds Miller et al. METHOD Association for Computing Machinery, New York, NY. pp. 139-147. METHOD ------------- MODEL 4 PARENT 1zzm_A D 4 D 7 T 5 T 8 H 6 H 9 V 7 C 10 H 8 H 11 L 9 F 12 D 11 D 13 E 12 F 14 Q 13 P 15 Y 14 P 16 D 15 F 17 D 16 E 22 D 17 A 23 L 18 S 24 S 19 L 25 E 20 Q 26 V 21 R 27 I 22 A 28 T 23 A 29 R 24 Q 30 A 25 A 31 R 26 G 32 V 30 V 33 D 31 G 34 R 32 K 35 M 33 I 36 F 34 I 37 V 35 V 38 V 36 P 39 G 37 A 40 F 38 T 41 N 39 E 42 K 40 A 43 S 41 E 44 T 42 N 45 I 43 F 46 E 44 A 47 R 45 R 48 A 46 V 49 M 47 L 50 K 48 A 51 L 49 L 52 I 50 A 53 D 51 E 54 E 52 N 55 Y 53 Y 56 D 54 Q 57 F 55 P 58 L 56 L 59 Y 57 Y 60 G 58 A 61 I 59 A 62 I 60 L 63 G 61 G 64 W 62 L 65 H 63 H 66 P 64 P 67 V 65 G 68 D 66 M 69 A 67 L 70 I 68 E 71 D 69 K 72 F 70 H 73 T 71 S 74 E 72 D 75 E 73 V 76 H 74 S 77 L 75 L 78 E 76 E 79 W 77 Q 80 I 78 L 81 E 79 Q 82 S 80 Q 83 L 81 A 84 A 82 L 85 Q 83 E 86 H 84 P 89 P 85 A 90 K 86 K 91 V 87 V 92 I 88 V 93 G 89 A 94 I 90 V 95 G 91 G 96 E 92 E 97 M 93 I 98 G 94 G 99 L 95 L 100 D 96 D 101 Y 97 L 102 H 98 F 103 W 99 D 105 K 101 D 106 S 102 P 107 P 103 Q 108 A 104 F 109 D 105 E 110 V 106 R 111 Q 107 Q 112 K 108 Q 113 E 109 W 114 V 110 L 115 F 111 L 116 R 112 D 117 K 113 E 118 Q 114 Q 119 I 115 L 120 A 116 K 121 L 117 L 122 A 118 A 123 K 119 K 124 R 120 R 125 L 121 Y 126 K 122 D 127 L 123 L 128 P 124 P 129 I 125 V 130 I 126 I 131 I 127 L 132 H 128 H 133 N 129 S 134 R 130 R 135 E 131 R 136 A 132 T 137 T 133 H 138 Q 134 D 139 D 135 K 140 C 136 L 141 I 137 A 142 D 138 M 143 I 139 H 144 L 140 L 145 L 141 K 146 E 142 R 147 H 144 H 148 A 145 D 149 E 146 L 150 E 147 P 151 V 148 R 152 G 149 T 153 G 150 G 154 I 151 V 155 M 152 V 156 H 153 H 157 S 154 G 158 F 155 F 159 S 156 S 160 G 157 G 161 S 158 S 162 P 159 L 163 E 160 Q 164 I 161 Q 165 A 162 A 166 D 163 E 167 I 164 R 168 V 165 F 169 T 166 V 170 N 167 Q 171 L 169 L 172 N 170 G 173 F 171 Y 174 Y 172 K 175 I 173 I 176 S 174 G 177 L 175 V 178 G 176 G 179 G 177 G 180 P 178 T 181 V 179 I 182 T 180 T 183 F 181 Y 184 K 182 P 185 N 183 R 186 A 184 A 187 K 185 S 188 Q 186 K 189 P 187 T 190 K 188 R 191 E 189 D 192 V 190 V 193 A 191 I 194 K 192 A 195 H 193 K 196 V 194 L 197 S 195 P 198 M 196 L 199 E 197 A 200 R 198 S 201 L 199 L 202 L 200 L 203 V 201 L 204 E 202 E 205 T 203 T 206 D 204 D 207 A 205 A 208 P 206 P 209 Y 207 D 210 L 208 M 211 S 209 P 212 P 210 L 213 H 211 N 214 P 212 G 215 Y 213 F 216 R 214 Q 217 G 215 G 218 K 216 Q 219 R 217 P 220 N 218 N 221 E 219 R 222 P 220 P 223 A 221 E 224 R 222 Q 225 V 223 A 226 T 224 A 227 L 225 R 228 V 226 V 229 A 227 F 230 E 228 A 231 Q 229 V 232 I 230 L 233 A 231 C 234 E 232 E 235 L 233 R 237 K 234 R 238 TER END