PFRMAT AL TARGET T0315 AUTHOR gtg REMARK Global Trace Graph (GTG) v2 used to find PDB templates REMARK SCORES 3437|8338|2212 METHOD GTG Deep-Search for transitive alignment of distantly-related proteins METHOD using a weighted Consistency-Motif score. Publication pending. METHOD The concepts of consistency and transitive alignment are described in METHOD detail in the publication: METHOD Heger A, Lappe M, Holm L (2003) Accurate detection of very sparse METHOD sequence motifs. RECOMB 2003: Proceedings of the 7th Annual International METHOD Conference on Research in Computational Biology, Eds Miller et al. METHOD Association for Computing Machinery, New York, NY. pp. 139-147. METHOD ------------- MODEL 5 PARENT 2ffi_A L 2 A 14 I 3 I 15 D 4 D 16 T 5 S 17 H 6 H 18 V 7 A 19 H 8 H 20 L 9 V 21 D 11 F 22 E 12 S 23 Q 13 R 24 D 15 G 25 D 16 G 43 D 17 D 44 L 18 Y 45 S 19 L 46 E 20 G 47 V 21 Q 48 I 22 L 49 T 23 R 50 R 24 A 51 A 25 H 52 R 26 G 53 V 30 F 54 D 31 S 55 R 32 H 56 M 33 G 57 F 34 V 58 V 35 L 59 V 36 V 60 G 37 Q 61 F 38 P 62 N 39 S 63 K 40 G 66 S 41 T 67 T 42 D 68 I 43 N 69 E 44 R 70 R 45 Y 71 A 46 L 72 M 47 L 73 K 48 S 74 L 49 A 75 I 50 L 76 D 51 Q 77 E 52 T 78 Y 53 V 79 D 54 P 80 F 55 G 81 L 56 Q 82 Y 57 L 83 G 58 R 84 I 59 G 85 I 60 V 86 G 61 V 87 W 62 X 88 H 63 L 89 P 64 E 90 V 65 R 91 D 66 D 92 A 67 V 93 I 68 E 94 E 73 Q 95 H 74 A 96 I 78 T 97 E 79 L 98 S 80 A 99 L 81 E 100 A 82 X 101 I 88 A 102 G 89 R 103 I 90 L 104 G 91 G 105 E 92 V 106 M 93 R 107 G 94 G 108 L 95 V 109 D 96 R 110 Y 97 L 111 H 98 N 112 W 99 L 113 D 100 X 114 K 101 G 115 S 102 D 117 P 103 X 118 A 104 P 119 D 105 D 120 V 106 L 121 Q 107 T 122 K 108 G 123 E 109 A 124 V 110 Q 125 F 111 W 126 R 112 R 127 K 113 P 128 Q 114 L 129 I 115 L 130 A 116 E 131 L 117 R 132 A 118 I 133 K 119 G 134 R 120 E 135 L 121 Q 136 K 122 G 137 L 123 W 138 P 124 H 139 I 125 V 140 I 126 E 141 I 127 L 142 H 128 H 143 N 129 R 144 R 130 Q 145 E 131 V 146 A 132 A 147 T 133 D 148 Q 134 I 149 D 135 P 150 C 136 V 151 I 137 L 152 D 138 V 153 I 139 R 154 L 140 A 155 L 141 L 156 E 142 Q 157 H 144 P 158 A 145 Y 159 E 146 G 160 E 147 L 161 V 148 D 162 G 149 I 163 G 150 V 164 I 151 I 165 M 152 D 166 H 153 H 167 S 154 F 168 F 155 G 169 S 156 R 170 G 157 P 171 S 158 D 172 P 159 F 182 E 160 A 183 I 161 E 184 A 162 L 185 D 163 L 186 I 164 T 187 V 165 L 188 T 166 S 189 N 167 R 191 L 169 G 192 N 170 K 193 F 171 V 194 Y 172 W 195 I 173 V 196 S 174 K 197 L 175 V 198 G 176 S 199 G 177 G 200 P 178 I 201 V 179 Y 202 T 180 R 203 F 181 Q 205 K 182 F 214 N 183 A 215 A 184 R 216 K 185 Q 217 Q 186 A 218 P 187 L 219 K 188 C 220 E 189 A 221 V 190 L 222 A 191 E 223 K 192 A 224 H 193 H 225 V 194 Y 226 S 195 G 227 M 196 A 228 E 197 E 229 R 198 R 230 L 199 L 231 L 200 X 232 V 201 W 233 E 202 G 234 T 203 S 235 D 204 D 236 A 205 W 237 P 206 P 238 Y 207 H 239 L 208 T 240 S 209 Q 241 P 210 H 242 H 211 E 243 P 212 S 244 Y 213 E 245 R 214 V 246 G 215 S 247 R 222 F 248 V 223 G 249 T 224 S 250 L 225 A 251 A 227 V 252 E 228 E 253 Q 229 Q 254 I 230 F 255 A 231 E 256 E 232 A 257 L 233 G 259 K 234 C 260 TER END