PFRMAT AL TARGET T0320 REMARK $$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ REMARK $ $ REMARK $ Your FUGUE job has finished successfully. $ REMARK $ A short summary is shown below and MORE DETAILED RESULT can be examined at $ REMARK $ $ REMARK $ http://raven.bioc.cam.ac.uk/~kenji/work/fugue/2934/fugue.html $ REMARK $ ------------------------------------------------------------------------- $ REMARK $ $ REMARK $ (the results will be deleted in *five* days). $ REMARK $ $ REMARK $ Information about the size of fold library and RECOMMENDED CUTOFF can be $ REMARK $ found in the description box below. $ REMARK $ $ REMARK $ Suggestions and comments to: fugue@cryst.bioc.cam.ac.uk $ REMARK $ $ REMARK $$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$$ REMARK REMARK REMARK REMARK REMARK ############################################################################### REMARK # FUGUE v2.s.07 (01 Apr 2003) # REMARK # # REMARK # Search sequence(s) against fold library using environment-specific # REMARK # substitution tables and structure-dependent gap penalties. # REMARK # # REMARK # Fold library and substitution tables are based on the HOMSTRAD database. # REMARK # http://www-cryst.bioc.cam.ac.uk/~homstrad/ # REMARK # # REMARK # FUGUE server is available at: # REMARK # http://www-cryst.bioc.cam.ac.uk/~fugue/ # REMARK # http://www-cryst.bioc.cam.ac.uk/~fugue/prfsearch.html # REMARK # # REMARK # Citation: # REMARK # J. Shi, T. L. Blundell and K. Mizuguchi (2001), J Mol Biol, 310(1), 243-57 # REMARK # # REMARK # N.B. Please note that Fugue has been updated (since 2nd of May 2002) and # REMARK # consequently the recommended z-score cut-offs used are different from # REMARK # previous versions. The new recommended cut-offs are shown below. # REMARK # # REMARK # Size of fold library: 6725 # REMARK # Probe sequence ID : T0320 # REMARK # Probe sequence len : 306 # REMARK # Probe divergence : 0.628 # REMARK # Recommended cutoff : ZSCORE >= 6.0 (CERTAIN 99% confidence) # REMARK # Other cutoff : ZSCORE >= 4.0 (LIKELY 95% confidence) # REMARK # Other cutoff : ZSCORE >= 3.5 (MARGINAL 90% confidence) # REMARK # Other cutoff : ZSCORE >= 2.0 (GUESS 50% confidence) # REMARK # Other cutoff : ZSCORE < 2.0 (UNCERTAIN) # REMARK # # REMARK # PLEN : Profile length # REMARK # RAWS : Raw alignment score # REMARK # RVN : (Raw score)-(Raw score for NULL model) # REMARK # ZSCORE : Z-score normalized by sequence divergence # REMARK # PVZ : P-value based on Z-score jumbling (Currently Disabled) # REMARK # ZORI : Original Z-score (before normalization) # REMARK # EVP : E-value based on profile calibration (Currently Disabled) # REMARK # EVF : E-value based on library search (Currently Disabled) # REMARK # AL : Alignment algorithm used for Zscore/Alignment calculation # REMARK # 0 -- Global, 2 -- GloLocSeq (No sequence termini gap penalty) # REMARK # 3 -- GloLocPrf (No profile termini gap penalty) # REMARK ############################################################################### REMARK REMARK REMARK #-----------------------------------------------------------------------------# REMARK # Profile PLEN RAWS RVN ZSCORE PVZ ZORI EVP EVF AL# REMARK # ****** # REMARK #-----------------------------------------------------------------------------# REMARK hs1sur 215 31 349 21.34 1.0E+03 23.82 1.0E+03 1.0E+03 00 REMARK hs1xngb 262 -237 108 4.67 1.0E+03 7.03 1.0E+03 1.0E+03 00 REMARK hsd1gpma1 175 -181 102 3.46 1.0E+03 5.43 1.0E+03 1.0E+03 02 REMARK hs1wy5a 311 -294 94 3.14 1.0E+03 5.69 1.0E+03 1.0E+03 00 REMARK hs1ru8a 222 -249 76 2.72 1.0E+03 5.18 1.0E+03 1.0E+03 00 REMARK hsd2nsya 271 -257 93 2.53 1.0E+03 4.90 1.0E+03 1.0E+03 00 REMARK hs1ovxa 38 21 6 2.36 1.0E+03 3.88 1.0E+03 1.0E+03 22 REMARK hs2cvha 220 -209 60 2.18 1.0E+03 3.28 1.0E+03 1.0E+03 00 REMARK hs2a1fa 232 -254 83 2.13 1.0E+03 4.20 1.0E+03 1.0E+03 00 REMARK hs2bwna 395 -467 51 2.12 1.0E+03 4.35 1.0E+03 1.0E+03 00 REMARK REMARK REMARK ### CASP FORMAT OUTPUT (EXPERIMENTAL ONLY, MAY CONTAINS ERRORS) ### REMARK ### IF NOT EQUIVELENT TO <> SECTION, THIS PART WILL BE DISCARDED. ### REMARK REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=21.34 REMARK CONFIDENCE: CERTAIN (99% confidence [ ZSCORE>=6.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1sur METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. METHOD ------------- MODEL 1 PARENT 1sur A 7 S 1 E 8 K 2 M 9 L 3 C 10 D 4 Y 11 L 5 E 12 N 6 I 13 A 7 T 14 L 8 N 15 N 9 S 16 E 10 Y 17 L 11 L 18 P 12 H 19 K 13 I 20 V 14 D 21 D 15 Q 22 R 16 K 23 I 17 S 24 L 18 Q 25 A 19 I 26 L 20 I 27 A 21 A 28 E 22 S 29 T 23 T 30 N 24 Q 31 A 25 E 32 E 26 A 33 L 27 I 34 E 28 R 35 K 29 L 36 L 30 T 37 D 31 R 38 A 32 K 39 E 33 Y 40 G 34 L 41 R 35 L 42 V 36 S 43 A 37 E 44 W 38 I 45 A 39 F 46 L 40 V 47 D 41 R 48 N 42 W 49 L 43 S 50 P 44 G 54 G 45 E 55 E 46 I 56 Y 47 S 57 V 48 F 58 L 49 S 59 S 50 Y 60 S 51 N 61 S 52 G 62 F 53 G 63 G 54 K 64 I 55 D 65 Q 56 C 66 A 57 Q 67 A 58 V 68 V 59 L 69 S 60 L 70 L 61 L 71 H 62 L 72 L 63 Y 73 V 64 L 74 N 65 S 75 Q 66 C 76 I 67 W 78 R 68 E 79 P 69 Y 80 D 70 F 81 I 71 F 82 P 72 I 83 V 73 K 84 I 74 A 85 L 75 Q 86 T 76 N 87 D 77 S 88 T 78 Q 89 G 79 F 90 Y 80 D 91 L 81 F 92 F 82 E 93 P 83 F 94 E 84 Q 95 T 85 S 96 Y 86 F 97 R 87 P 98 F 88 M 99 I 89 Q 100 D 90 R 101 E 91 L 102 L 92 P 103 T 93 T 104 D 94 V 105 K 95 F 106 L 96 I 107 L 98 D 108 N 99 Q 109 L 100 E 110 K 101 E 111 V 102 T 112 Y 103 F 113 R 104 P 114 A 105 T 115 T 106 L 116 E 107 E 117 S 108 N 118 A 109 F 119 A 110 V 120 W 111 L 121 Q 112 E 122 E 113 T 123 A 114 S 124 R 115 E 125 Y 116 R 126 G 117 Y 127 K 118 C 128 L 119 L 129 W 120 S 130 E 121 L 131 Q 122 Y 132 G 123 E 133 V 124 S 134 E 125 Q 135 G 126 R 136 I 127 Q 137 E 128 S 138 K 129 G 139 Y 130 A 140 N 131 S 141 D 132 V 142 I 133 N 143 N 134 M 144 K 135 A 145 V 136 D 146 E 137 A 147 P 138 F 148 M 139 R 149 N 140 D 150 R 141 F 151 A 142 I 152 L 143 K 153 K 144 I 154 E 145 Y 155 L 146 P 156 N 147 T 158 A 148 E 159 Q 149 A 160 T 150 I 161 W 151 V 162 F 152 I 163 A 153 G 164 G 154 I 165 L 155 R 166 R 156 H 167 R 157 T 168 E 158 D 169 Q 159 P 170 S 160 F 171 G 161 G 172 S 162 E 173 R 163 A 174 A 164 L 175 N 165 K 176 L 166 P 177 P 167 I 178 V 168 Q 179 L 169 R 180 A 170 T 181 I 171 D 182 Q 172 P 186 R 173 D 187 G 174 F 188 V 175 M 189 F 176 R 190 K 177 L 191 V 178 Q 192 L 179 P 193 P 180 L 194 I 181 L 195 I 182 H 196 D 183 W 197 W 184 D 198 D 185 L 199 N 186 T 200 R 187 N 201 T 188 I 202 I 189 W 203 Y 190 S 204 Q 191 F 205 Y 192 L 206 L 193 L 207 Q 194 Y 208 K 195 S 209 H 196 N 210 G 197 E 211 L 198 P 212 K 199 I 213 Y 200 C 214 H 201 G 215 P 202 L 216 L 203 Y 217 W 204 G 218 D 205 K 219 E 206 G 220 G 207 F 221 Y 208 T 222 L 209 S 223 S 210 I 224 V 211 G 225 G 212 G 226 D 213 I 227 T 214 N 228 H 215 TER END