PFRMAT AL TARGET T0320 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=3.46 REMARK CONFIDENCE: GUESS (50% confidence [ ZSCORE>=2.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hsd1gpma1 METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. METHOD ------------- MODEL 3 PARENT 1gpm_A L 36 W 208 T 37 T 209 R 38 P 210 K 39 A 211 Y 40 K 212 L 41 I 213 L 42 I 214 S 43 D 215 E 44 D 216 I 45 A 217 F 46 V 218 V 47 A 219 R 48 R 220 W 49 I 221 S 50 R 222 P 51 E 223 L 52 Q 224 N 53 D 227 G 54 D 228 E 55 K 229 I 56 V 230 S 57 I 231 F 58 L 232 S 59 G 233 Y 60 L 234 N 61 S 235 G 62 G 236 G 63 G 237 K 64 V 238 D 65 D 239 C 66 S 240 Q 67 S 241 V 68 V 242 L 69 T 243 L 70 A 244 L 71 M 245 L 72 L 246 Y 73 L 247 L 74 H 248 S 75 R 249 C 76 A 250 L 77 I 251 W 78 G 252 E 79 K 253 Y 80 N 254 F 81 L 255 F 82 T 256 I 83 C 257 K 84 V 258 A 85 F 259 Q 86 V 260 N 87 D 261 S 88 N 262 Q 89 G 263 F 90 L 264 D 91 L 265 F 92 R 266 E 93 L 267 P 114 N 268 T 115 E 269 L 116 A 270 E 117 E 271 N 118 Q 272 F 119 V 273 V 120 L 274 L 121 D 275 E 122 M 276 T 123 F 277 S 124 G 278 E 125 D 279 R 126 H 280 Y 127 F 281 C 128 G 282 L 129 L 283 S 130 N 284 L 131 I 285 Y 132 V 286 E 133 H 287 S 134 V 288 Q 135 P 289 R 136 A 290 Q 137 E 291 S 138 D 292 G 139 R 293 A 140 F 294 S 141 L 295 V 142 S 296 N 143 A 297 M 144 L 298 A 145 A 299 D 146 G 300 A 147 E 301 F 148 N 302 R 149 D 303 D 150 P 304 F 151 E 305 I 152 A 306 K 153 K 307 I 154 R 308 Y 155 K 309 P 156 I 310 E 157 I 311 T 158 G 312 E 159 R 313 A 160 V 314 I 161 F 315 V 162 V 316 I 163 E 317 G 164 V 318 I 165 F 319 R 166 D 320 H 167 E 321 T 168 E 322 D 169 A 323 P 170 L 324 F 171 K 325 G 172 L 326 E 173 E 327 A 174 D 328 L 175 V 329 K 176 K 330 P 177 W 331 I 178 L 332 Q 179 P 339 R 180 D 340 T 181 V 341 D 182 I 342 S 183 E 343 N 184 S 344 W 185 A 345 P 186 A 346 D 187 K 369 F 188 M 370 M 189 G 371 R 190 L 372 L 191 V 373 Q 192 E 374 P 193 P 375 L 194 L 376 L 195 K 377 H 196 E 378 W 197 L 379 D 198 F 380 L 199 K 381 T 200 D 382 N 201 E 383 I 202 V 384 W 203 R 385 S 204 K 386 F 205 I 387 L 206 G 388 L 207 L 389 Y 208 E 390 S 209 L 391 N 210 G 392 E 211 L 393 P 212 P 394 I 213 Y 395 C 214 D 396 G 215 M 397 L 216 L 398 Y 217 Y 399 G 218 R 400 K 219 H 401 G 220 P 402 F 221 F 403 T 222 P 404 TER END