PFRMAT AL TARGET T0320 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=2.72 REMARK CONFIDENCE: GUESS (50% confidence [ ZSCORE>=2.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1ru8a METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. METHOD ------------- MODEL 5 PARENT 1ru8_A L 52 G 3 N 53 L 4 G 54 A 5 E 55 D 6 I 56 V 7 S 57 A 8 F 58 V 9 S 59 L 10 Y 60 Y 11 N 61 S 12 G 62 G 13 G 63 G 14 K 64 K 15 D 65 D 16 C 66 S 17 Q 67 N 18 V 68 Y 19 L 69 A 20 L 70 L 21 L 71 Y 22 L 72 W 23 Y 73 A 24 L 74 I 25 S 75 K 26 Q 95 N 27 S 96 R 28 F 97 F 29 P 98 S 30 M 99 V 31 Q 100 K 32 R 101 F 33 L 102 L 34 P 103 V 35 T 104 T 36 V 105 V 38 F 106 S 39 I 107 E 40 D 108 N 41 Q 109 E 42 E 110 E 43 E 111 S 44 T 112 Y 45 F 113 Y 47 P 114 T 49 T 115 I 50 L 116 N 51 E 117 A 52 N 118 N 53 F 119 L 54 V 120 T 55 L 121 D 56 E 122 L 57 T 123 Q 58 S 124 A 59 E 125 R 60 R 126 A 61 Y 127 L 62 C 128 G 63 L 129 I 64 S 130 P 65 L 131 L 66 Y 132 V 67 E 133 K 68 S 134 G 69 Q 135 F 70 R 136 T 71 Q 137 Q 72 S 138 G 73 G 139 E 74 A 140 K 75 S 141 E 76 V 142 K 77 N 143 E 78 M 144 V 79 A 145 E 80 D 146 D 81 A 147 L 82 F 148 K 83 R 149 R 84 D 150 V 85 F 151 L 86 I 152 S 87 K 153 G 88 P 156 L 89 E 157 K 90 T 158 I 91 E 159 Q 92 A 160 G 93 I 161 I 94 V 162 V 95 I 163 A 96 G 164 G 97 F 171 A 100 G 172 S 101 E 173 K 102 A 174 Y 103 L 175 Q 104 K 176 R 105 P 177 K 106 I 178 R 107 Q 179 I 108 R 180 E 109 T 181 K 110 D 182 V 111 S 183 A 112 N 184 K 113 W 185 E 114 P 186 L 115 D 187 G 116 F 188 L 117 M 189 E 118 R 190 V 119 L 191 Y 120 Q 192 T 121 P 193 P 122 L 194 A 123 L 195 W 124 H 196 G 125 W 197 R 126 D 198 D 127 L 199 A 128 T 200 K 129 N 201 E 130 I 202 Y 131 W 203 R 133 S 204 E 134 F 205 L 135 L 206 L 136 L 207 N 137 Y 208 L 138 S 209 G 139 N 210 F 140 E 211 K 141 P 212 I 142 I 213 V 144 C 214 V 145 G 215 G 146 L 216 V 147 Y 217 S 148 G 218 A 149 K 219 Y 150 G 220 G 151 F 221 L 152 T 222 D 153 S 223 E 154 I 224 S 155 G 225 G 158 G 226 R 159 I 227 I 160 N 228 L 161 N 229 D 162 S 230 E 163 L 231 S 164 P 232 A 165 N 233 L 166 P 234 E 167 H 235 E 168 L 236 L 169 R 237 I 170 K 238 T 171 D 239 L 172 S 240 N 173 N 241 E 174 N 242 K 175 P 243 Y 176 A 244 K 177 L 245 V 178 H 246 H 179 F 247 V 180 E 248 A 181 W 249 G 182 E 250 E 183 G 256 G 184 K 257 G 185 D 258 E 186 A 259 F 187 E 260 E 188 G 261 T 189 E 262 F 190 R 263 V 191 S 264 L 192 S 265 D 193 A 266 P 195 I 267 L 196 N 268 F 197 T 269 K 198 S 270 Y 199 P 271 K 200 I 272 I 201 S 273 V 202 V 274 V 203 V 275 D 204 D 276 K 205 K 277 A 206 E 278 K 207 R 279 K 208 Y 283 V 209 H 284 W 210 D 285 E 211 N 286 P 212 Y 287 C 213 Y 288 T 214 P 289 S 215 G 290 S 216 W 291 G 217 Y 292 K 218 L 293 L 219 V 294 I 220 D 295 I 221 D 296 E 222 T 297 E 223 L 298 A 224 E 299 H 225 R 300 L 226 A 301 E 227 G 302 S 228 R 303 K 229 I 304 L 230 K 305 E 231 N 306 H 232 TER END