PFRMAT AL
TARGET T0320 FAD1, Saccharomyces cerevisiae, 306 res
AUTHOR SAM-T99
METHOD This pairwise alignment was produced using the SAM-T99 method
METHOD 
METHOD  ------------- Citations (SAM, SAM-T99, HMMs) -----------------
METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
METHOD   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
METHOD   remote protein homologies, Bioinformatics 14(10):846-856, 1999.
METHOD A. Krogh et al., Hidden Markov models in computational biology:
METHOD   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
METHOD -------------
MODEL 3
PARENT 1gpmA
L 42    D 216
S 43    A 217
E 44    V 218
I 45    A 219
F 46    R 220
V 47    I 221
R 48    R 222
W 49    E 223
S 50    Q 224
P 51    V 225
L 52    G 226
N 53    D 227
G 54    D 228
E 55    K 229
I 56    V 230
S 57    I 231
F 58    L 232
S 59    G 233
Y 60    L 234
N 61    S 235
G 62    G 236
G 63    G 237
K 64    V 238
D 65    D 239
C 66    S 240
Q 67    S 241
V 68    V 242
L 69    T 243
L 70    A 244
L 71    M 245
L 72    L 246
Y 73    L 247
L 74    H 248
S 75    R 249
C 76    A 250
L 77    I 251
W 78    G 252
Q 100    K 253
R 101    N 254
L 102    L 255
P 103    T 256
T 104    C 257
V 105    V 258
F 106    F 259
I 107    V 260
D 108    D 261
Q 109    N 262
E 110    G 263
E 111    L 264
T 112    R 266
F 113    L 267
P 114    N 268
T 115    E 269
L 116    A 270
E 117    E 271
N 118    Q 272
F 119    V 273
V 120    L 274
L 121    D 275
E 122    M 276
T 123    F 277
S 124    G 278
E 125    D 279
R 126    H 280
Y 127    F 281
C 128    G 282
L 129    L 283
S 130    N 284
L 131    I 285
Y 132    V 286
E 133    H 287
S 134    V 288
TER
END