PFRMAT AL TARGET T0321 REMARK FUGUE AUTOMATIC ALIGNMENT REMARK ZSCORE=3.08 REMARK CONFIDENCE: GUESS (50% confidence [ ZSCORE>=2.0 ]) REMARK DERIVED FROM HOMSTRAD PROFILE: hs1r6va METHOD Environment-specific substitution tables were derived from the structure-based METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted METHOD into a scoring template (profile) using the environment-specific substitution METHOD tables and structure-dependent gap penalties. The program FUGUE searches METHOD a sequence or sequence alignment against the library of profiles. METHOD ------------- MODEL 2 PARENT 1r6v_A M 1 D 254 W 2 D 255 E 3 Y 256 I 4 V 257 Y 5 A 258 D 6 A 259 A 7 G 260 M 8 I 261 I 9 I 262 N 10 W 263 G 11 A 264 I 12 T 265 P 13 D 266 E 14 H 267 D 15 G 268 F 16 A 269 L 17 K 270 V 18 V 271 D 19 M 272 E 20 N 273 L 21 H 274 V 22 S 275 C 23 W 276 G 24 G 277 W 70 G 278 N 71 W 279 Y 72 G 280 V 73 Y 281 E 74 S 282 A 75 Y 283 S 76 T 284 I 77 M 285 G 78 K 286 L 79 E 287 A 80 A 288 A 81 F 289 I 82 D 290 N 83 Y 291 A 84 A 292 Y 85 M 293 Y 86 E 294 N 87 H 295 N 88 G 296 P 89 V 297 V 125 V 298 G 126 M 299 V 127 V 300 V 128 V 301 G 129 S 302 H 130 A 303 G 154 G 304 D 155 N 305 Y 156 N 306 P 157 T 307 L 158 S 308 P 159 D 309 A 160 S 310 S 161 H 311 E 162 H 312 F 163 Q 313 I 164 Y 314 L 165 P 315 P 166 A 316 E 167 G 317 C 168 Y 318 D 169 P 319 Y 170 G 320 V 171 V 321 Y 172 I 322 I 173 Q 323 T 174 V 324 C 175 A 325 A 176 A 326 S 177 L 327 V 178 D 328 V 179 Y 329 D 180 Y 330 K 181 G 331 T 182 G 332 L 183 T 333 P 184 F 334 R 185 R 335 L 186 V 336 L 187 A 337 E 188 G 338 L 189 F 339 S 190 S 340 R 191 S 341 N 192 R 342 A 193 S 343 R 194 D 344 R 195 G 345 I 196 V 346 T 197 S 347 L 198 V 348 V 199 G 349 G 200 A 350 P 201 P 351 G 202 G 352 T 203 V 353 P 204 T 354 L 205 I 355 A 206 L 356 P 207 S 357 V 208 T 358 L 209 V 359 F 210 P 360 E 211 G 361 H 212 E 362 G 213 D 363 L 214 S 364 Q 215 I 365 E 216 G 366 L 217 Y 367 S 218 E 368 G 219 G 369 G 234 H 370 A 235 N 371 E 236 E 372 K 237 N 373 V 238 V 374 K 239 P 375 I 240 A 376 Y 241 T 377 S 242 N 378 A 243 G 379 G 244 G 380 Q 245 T 381 K 246 Y 382 V 247 D 383 T 248 Y 384 I 249 Y 385 K 250 Q 386 K 251 G 387 TER END