PFRMAT AL TARGET T0338 AUTHOR gtg REMARK REMARK --envbJBWh7q8WU6mo REMARK Content-Type: text/plain; charset=us-ascii REMARK Content-Disposition: inline REMARK REMARK File attached. REMARK REMARK --envbJBWh7q8WU6mo REMARK Content-Type: text/plain; charset=us-ascii REMARK Content-Disposition: attachment; filename="T0338.al" REMARK REMARK Global Trace Graph (GTG) v2 used to find PDB templates REMARK SCORES 5250|17366|2222 METHOD GTG Deep-Search for transitive alignment of distantly-related proteins METHOD using a weighted Consistency-Motif score. Publication pending. METHOD The concepts of consistency and transitive alignment are described in METHOD detail in the publication: METHOD Heger A, Lappe M, Holm L (2003) Accurate detection of very sparse METHOD sequence motifs. RECOMB 2003: Proceedings of the 7th Annual International METHOD Conference on Research in Computational Biology, Eds Miller et al. METHOD Association for Computing Machinery, New York, NY. pp. 139-147. METHOD ------------- MODEL 1 PARENT 1fin_B A 1 E 180 S 2 D 181 S 3 I 182 R 4 H 183 W 5 T 184 F 6 Y 185 F 7 L 186 T 8 R 187 R 9 E 188 E 10 M 189 Q 11 E 190 L 12 V 191 E 13 K 192 N 14 C 193 T 15 K 194 P 16 P 195 S 17 K 196 R 18 V 197 R 19 Y 199 C 20 M 200 G 21 K 201 V 22 K 202 E 23 Q 203 A 24 P 204 D 25 D 205 K 26 I 206 E 27 T 207 L 28 N 208 S 29 S 209 C 30 M 210 R 31 R 211 Q 32 A 212 Q 33 I 213 A 34 L 214 A 35 V 215 N 36 D 216 L 37 W 217 I 38 L 218 Q 39 V 219 E 40 E 220 M 41 V 221 G 42 G 222 Q 43 E 223 R 44 E 224 L 45 Y 225 N 46 K 226 V 47 L 227 S 48 Q 228 Q 49 N 229 L 50 E 230 T 51 T 231 I 52 L 232 N 53 H 233 T 54 L 234 A 55 A 235 I 56 V 236 V 57 N 237 Y 58 Y 238 M 59 I 239 H 60 D 240 R 61 R 241 F 62 F 242 Y 63 L 243 M 64 S 244 H 65 S 245 H 66 M 246 S 67 S 247 F 68 V 248 T 69 L 249 K 70 R 250 F 71 G 251 N 72 K 252 K 73 L 253 N 74 Q 254 I 75 L 255 I 76 V 256 S 77 G 257 S 78 T 258 T 79 A 259 A 80 A 260 L 81 M 261 F 82 L 262 L 83 L 263 A 84 A 264 A 85 S 265 K 86 K 266 V 87 F 267 E 88 E 268 E 89 E 269 Q 90 I 270 A 91 Y 271 R 92 P 272 K 93 P 273 L 94 E 274 E 95 V 275 H 96 A 276 V 97 E 277 I 98 F 278 K 99 V 279 V 100 Y 280 C 116 I 281 D 117 T 282 A 118 D 283 Y 119 D 284 L 120 T 285 Q 121 Y 286 Q 122 T 287 T 123 K 288 R 124 K 289 E 125 Q 290 L 126 V 291 V 127 L 292 I 128 R 293 L 129 M 294 E 130 E 295 T 131 H 296 I 132 L 297 M 133 V 298 L 134 L 299 Q 135 K 300 T 136 V 301 L 137 L 302 G 138 T 303 F 139 F 304 E 140 D 305 I 141 L 306 T 142 A 307 I 143 A 308 E 144 P 309 H 145 T 310 P 146 V 311 H 147 N 312 T 148 Q 313 D 149 F 314 V 150 L 315 V 151 T 316 K 152 Q 317 C 153 F 319 T 154 L 320 Q 155 H 321 L 156 Q 322 V 157 Q 323 R 158 P 324 A 159 A 325 S 160 N 326 K 161 C 327 D 162 K 328 L 163 V 329 A 164 E 330 Q 165 S 331 T 166 L 332 S 167 A 333 Y 168 M 334 F 169 F 335 M 170 L 336 A 171 G 337 T 172 E 338 N 173 L 339 S 174 S 340 L 175 L 341 H 176 I 342 T 178 D 343 T 179 A 344 F 180 D 345 C 181 Y 347 L 182 L 348 Q 183 K 349 Y 184 Y 350 K 185 L 351 P 186 P 352 T 187 S 353 V 188 V 354 I 189 I 355 A 190 A 356 C 191 G 357 V 192 A 358 C 193 A 359 I 194 F 360 H 195 H 361 L 196 L 362 A 197 A 363 C 198 L 364 K 199 Y 365 W 200 T 366 S 201 V 367 N 202 T 368 W 203 G 369 E 204 Q 370 V 207 S 371 S 208 W 372 T 209 P 373 D 210 E 374 G 211 S 375 K 212 L 376 H 213 I 377 W 214 R 378 W 215 K 379 P 220 T 380 T 221 G 381 V 222 Y 382 T 223 T 383 L 224 L 384 E 225 E 385 L 226 S 386 L 227 L 387 D 228 K 388 E 229 P 389 L 230 C 390 T 231 M 392 H 232 D 393 E 233 L 394 F 234 H 395 L 235 Q 396 Q 236 T 397 I 237 Y 398 L 238 L 399 E 239 K 400 K 240 A 401 T 241 P 402 P 242 Q 403 N 243 H 404 R 244 A 405 L 245 Q 406 K 246 Q 407 K 247 S 408 I 248 I 409 R 249 R 410 N 250 E 411 W 251 K 412 R 252 Y 413 A 253 K 414 N 254 N 415 Q 255 S 416 A 256 V 421 TER END