PFRMAT AL TARGET T0338 AUTHOR gtg REMARK Global Trace Graph (GTG) v2 used to find PDB templates REMARK SCORES 4829|16929|1804 METHOD GTG Deep-Search for transitive alignment of distantly-related proteins METHOD using a weighted Consistency-Motif score. Publication pending. METHOD The concepts of consistency and transitive alignment are described in METHOD detail in the publication: METHOD Heger A, Lappe M, Holm L (2003) Accurate detection of very sparse METHOD sequence motifs. RECOMB 2003: Proceedings of the 7th Annual International METHOD Conference on Research in Computational Biology, Eds Miller et al. METHOD Association for Computing Machinery, New York, NY. pp. 139-147. METHOD ------------- MODEL 3 PARENT 1jow_A A 1 P 21 S 2 R 22 S 3 V 23 R 4 L 24 W 5 N 25 F 6 N 26 F 7 L 27 T 8 K 28 R 9 L 29 E 10 R 30 Q 11 E 31 L 12 L 32 E 13 L 33 N 14 L 34 T 15 P 35 P 16 K 36 S 17 F 37 R 18 T 38 R 19 L 40 C 20 W 41 G 21 E 42 V 22 I 43 E 23 Q 44 A 24 T 45 D 25 E 46 K 26 V 47 E 27 T 48 L 28 V 49 S 29 D 50 C 30 N 51 R 31 R 52 Q 32 T 53 Q 33 I 54 A 34 L 55 A 35 L 56 N 36 T 57 L 37 W 58 I 38 M 59 Q 39 H 60 E 40 L 61 M 41 L 62 G 42 C 63 Q 43 E 64 R 44 S 65 L 45 F 66 N 46 E 67 V 47 L 68 S 48 D 69 Q 49 K 70 L 50 S 71 T 51 V 72 I 52 F 73 N 53 P 74 T 54 L 75 A 55 S 76 I 56 V 77 V 57 S 78 Y 58 I 79 M 59 L 80 H 60 D 81 R 61 R 82 F 62 Y 83 Y 63 L 84 M 64 C 85 H 65 K 86 H 66 K 87 S 67 Q 88 F 68 G 89 T 69 T 90 K 70 K 91 F 71 K 92 N 72 T 93 K 73 L 94 N 74 Q 95 I 75 K 96 I 76 I 97 S 77 G 98 S 78 A 99 T 79 A 100 A 80 C 101 L 81 V 102 F 82 L 103 L 83 I 104 A 84 G 105 A 85 S 106 K 86 K 107 V 87 I 108 E 88 R 109 E 89 T 110 Q 90 V 111 A 91 K 112 R 92 P 113 K 93 M 114 L 94 T 115 E 95 V 116 H 96 S 117 V 97 K 118 I 98 L 119 K 99 T 120 V 100 Y 121 C 116 L 122 D 117 S 123 Q 121 F 127 Q 122 T 128 T 123 N 129 R 124 L 130 E 125 E 131 L 126 L 132 V 127 I 133 I 128 N 134 L 129 Q 135 E 130 E 136 T 131 K 137 I 132 D 138 M 133 I 139 L 134 L 140 Q 135 E 141 T 136 A 142 L 137 L 143 G 138 K 144 F 139 W 145 E 140 D 146 I 141 T 147 T 142 E 148 I 143 A 149 E 144 V 150 H 145 L 151 P 146 A 152 H 147 T 153 T 148 D 154 D 149 F 155 V 150 L 156 V 151 I 157 K 152 P 158 C 153 L 159 T 154 C 160 Q 155 N 161 L 156 A 162 V 157 L 163 R 158 K 164 A 159 I 165 S 160 P 166 K 161 E 167 D 162 Q 172 L 163 L 173 A 164 Y 174 Q 165 E 175 T 166 A 176 S 167 A 177 Y 168 S 178 F 169 T 179 M 170 T 180 A 171 I 181 T 172 C 182 N 173 K 183 S 174 A 184 L 175 L 185 H 176 I 186 T 178 Q 187 T 179 P 188 F 180 N 189 C 181 I 190 L 182 A 191 Q 183 L 192 Y 184 L 193 K 185 S 194 P 186 P 195 T 187 G 196 V 188 L 197 I 189 I 198 A 190 C 199 C 191 A 200 V 192 G 201 C 193 G 202 I 194 L 203 H 195 L 204 L 196 T 205 A 197 T 206 C 198 I 207 K 199 E 208 W 200 T 209 S 201 D 210 N 202 N 211 W 203 T 212 E 204 N 213 I 205 C 214 P 206 R 215 V 207 C 219 S 208 Y 220 T 209 L 221 D 210 E 222 G 211 D 223 K 212 L 224 H 213 S 225 W 214 S 226 W 215 I 227 P 220 L 228 T 221 N 229 V 222 F 230 T 223 S 231 L 224 T 232 E 225 N 233 L 226 T 234 L 227 V 235 D 228 R 236 E 229 T 237 L 230 V 238 T 231 K 239 H 232 D 240 E 233 Q 241 F 234 V 242 L 235 S 243 Q 236 E 244 I 237 A 245 L 238 F 246 E 239 S 247 K 240 L 248 T 241 Y 249 P 242 D 250 N 243 L 251 R 244 E 252 L 245 I 253 TER END