PFRMAT AL
TARGET T0345
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=9.52 
REMARK CONFIDENCE: CERTAIN   (99% confidence [ ZSCORE>=6.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs2fy6a
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
METHOD -------------
MODEL  3
PARENT 2fy6_A
K   4     V    33 
S   5     P    34 
F   6     H    35 
Y   7     T    36 
D   8     L    37 
L   9     S    38 
S  10     T    39 
A  11     L    40 
I  12     K    41 
N  13     T    42 
L  14     A    43 
D  15     D    44 
G  16     N    45 
E  17     R    46 
K  18     P    47 
V  19     A    48 
D  20     S    49 
F  21     V    50 
N  22     Y    51 
T  23     L    52 
F  24     K    53 
R  25     K    54 
G  26     D    55 
R  27     K    56 
A  28     P    57 
V  29     T    58 
L  30     L    59 
I  31     I    60 
E  32     K    61 
N  33     F    62 
V  34     W    63 
A  35     A    64 
S  36     S    65 
L  37     W    66 
C  38     C    67 
G  39     P    68 
T  40     L    69 
T  41     C    70 
T  42     L    71 
R  43     S    72 
D  44     E    73 
F  45     L    74 
T  46     G    75 
Q  47     Q    76 
L  48     T    77 
N  49     E    78 
E  50     K    79 
L  51     W    80 
Q  52     A    81 
C  53     Q    82 
R  54     D    83 
F  55     A    84 
P  56     K    85 
R  57     S    87 
R  58     S    88 
L  59     A    89 
V  60     N    90 
V  61     L    91 
L  62     I    92 
G  63     T    93 
F  64     V    94 
P  65     A    95 
C  66     S    96 
N  67     P    97 
Q  68     G    98 
F  69     F    99 
G  70     L   100 
H  71     H   101 
Q  72     E   102 
E  73     K   103 
N  74     K   104 
C  75     D   105 
Q  76     G   106 
T  98     D   107 
L  99     F   108 
V 100     Q   109 
Q 101     K   110 
K 102     W   111 
C 103     Y   112 
E 104     A   113 
V 105     G   114 
N 106     L   115 
G 107     N   116 
Q 108     Y   117 
N 109     P   118 
E 110     K   119 
H 111     L   120 
P 112     P   121 
V 113     V   122 
F 114     V   123 
A 115     T   124 
Y 116     D   125 
L 117     N   126 
K 118     G   127 
D 119     G   128 
K 120     T   129 
L 121     I   130 
P 122     A   131 
Y 123     Q   132 
P 124     S   133 
Y 125     L   134 
D 126     N   135 
V 148     I   136 
A 149     S   137 
W 150     V   138 
N 151     Y   139 
F 152     P   140 
E 153     S   141 
K 154     W   142 
F 155     A   143 
L 156     L   144 
I 157     I   145 
G 158     G   146 
P 159     K   147 
E 160     D   148 
G 161     G   149 
E 162     D   150 
P 163     V   151 
F 164     Q   152 
R 165     R   153 
R 166     I   154 
Y 167     V   155 
S 168     K   156 
R 169     G   157 
T 170     S   158 
F 171     I   159 
P 172     N   160 
T 173     E   161 
I 174     A   162 
N 175     Q   163 
I 176     A   164 
E 177     L   165 
P 178     A   166 
D 179     L   167 
I 180     I   168 
K 181     R   169 
R 182     D   170 
L 183     P   171 
L 184     N   172 
K 185     A   173 
TER
END