PFRMAT AL
TARGET T0345 GPX2, Homo sapiens, 185 res
AUTHOR SAM-T99
METHOD This pairwise alignment was produced using the SAM-T99 method
METHOD 
METHOD  ------------- Citations (SAM, SAM-T99, HMMs) -----------------
METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
METHOD   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
METHOD   remote protein homologies, Bioinformatics 14(10):846-856, 1999.
METHOD A. Krogh et al., Hidden Markov models in computational biology:
METHOD   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
METHOD -------------
MODEL 3
PARENT 1gp1B
K 4    R 10
S 5    T 11
F 6    V 12
Y 7    Y 13
D 8    A 14
L 9    F 15
S 10    S 16
A 11    A 17
I 12    R 18
N 13    P 19
L 14    L 20
D 15    G 22
G 16    G 23
E 17    E 24
K 18    P 25
V 19    F 26
D 20    N 27
F 21    L 28
N 22    S 29
T 23    S 30
F 24    L 31
R 25    R 32
G 26    G 33
R 27    K 34
A 28    V 35
V 29    L 36
L 30    L 37
I 31    I 38
E 32    E 39
N 33    N 40
V 34    V 41
A 35    A 42
S 36    S 43
L 37    L 44
C 38    X 45
G 39    G 46
T 40    T 47
T 41    T 48
R 43    R 50
D 44    D 51
F 45    Y 52
T 46    T 53
Q 47    Q 54
L 48    M 55
N 49    N 56
E 50    D 57
L 51    L 58
Q 52    Q 59
C 53    R 60
R 54    R 61
F 55    L 62
P 56    G 63
R 57    P 64
R 58    R 65
L 59    L 67
V 60    V 68
V 61    V 69
L 62    L 70
G 63    G 71
F 64    F 72
P 65    P 73
C 66    C 74
N 67    N 75
Q 68    Q 76
F 69    F 77
G 70    G 78
H 71    H 79
Q 72    Q 80
E 73    E 81
N 74    N 82
C 75    A 83
Q 76    K 84
N 77    N 85
E 78    E 86
E 79    E 87
I 80    I 88
L 81    L 89
N 82    N 90
S 83    C 91
L 84    L 92
K 85    K 93
Y 86    Y 94
V 87    V 95
R 88    R 96
P 89    P 97
G 90    G 98
G 91    G 99
G 92    G 100
Y 93    F 101
Q 94    E 102
P 95    P 103
T 96    N 104
F 97    F 105
T 98    M 106
L 99    L 107
V 100    F 108
Q 101    E 109
K 102    K 110
C 103    C 111
E 104    E 112
V 105    V 113
N 106    N 114
G 107    G 115
Q 108    E 116
N 109    K 117
E 110    A 118
H 111    H 119
P 112    P 120
V 113    L 121
F 114    F 122
A 115    A 123
Y 116    F 124
L 117    L 125
K 118    R 126
D 119    E 127
K 120    V 128
L 121    L 129
P 122    P 130
Y 123    T 131
P 124    P 132
Y 125    S 133
D 126    D 134
D 127    D 135
P 128    A 136
F 129    T 137
S 130    A 138
L 131    L 139
M 132    M 140
T 133    T 141
D 134    D 142
P 135    P 143
K 136    K 144
L 137    F 145
I 138    I 146
I 139    T 147
W 140    W 148
S 141    S 149
P 142    P 150
V 143    V 151
R 144    C 152
R 145    R 153
S 146    N 154
D 147    D 155
V 148    V 156
A 149    S 157
W 150    W 158
N 151    N 159
F 152    F 160
E 153    E 161
K 154    K 162
F 155    F 163
L 156    L 164
I 157    V 165
G 158    G 166
P 159    P 167
E 160    D 168
G 161    G 169
E 162    V 170
P 163    P 171
F 164    V 172
R 165    R 173
R 166    R 174
Y 167    Y 175
S 168    S 176
R 169    R 177
T 170    R 178
F 171    F 179
P 172    L 180
T 173    T 181
I 174    I 182
N 175    D 183
I 176    I 184
E 177    E 185
P 178    P 186
D 179    D 187
I 180    I 188
K 181    E 189
R 182    T 190
L 183    L 191
L 184    L 192
K 185    S 193
TER
END