PFRMAT DP
TARGET T0349
METHOD HHpred3 (http://hhpred.tuebingen.mpg.de)
METHOD Homology-based domain prediction by HMM-HMM comparison and transitive
METHOD profile search.
METHOD The target is compared with SCOP (http://scop.mrc-lmb.cam.ac.uk/scop)
METHOD and Pfam (http://www.sanger.ac.uk/Software/Pfam/) using HHsearch.
METHOD If no match with probability >=90% is found, our intermediate profile
METHOD search routine HHsenser is employed on the target to boost its 
METHOD alignment with remote homologs.
METHOD -------------
MODEL  1
PARENT d1utaa_ 
  1 M 1 0.71
  2 R 1 0.71
  3 E 1 0.71
  4 L 1 0.71
  5 L 1 0.71
  6 R 1 0.71
  7 T 1 0.71
  8 N 1 0.71
  9 D 1 0.71
 10 A 1 0.71
 11 V 1 0.71
 12 L 1 0.71
 13 L 1 0.71
 14 S 1 0.71
 15 A 1 0.71
 16 V 1 0.71
 17 G 1 0.71
 18 A 1 0.71
 19 L 1 0.71
 20 L 1 0.71
 21 D 1 0.71
 22 G 1 0.71
 23 A 1 0.71
 24 D 1 0.71
 25 I 1 0.71
 26 G 1 0.71
 27 H 1 0.71
 28 L 1 0.71
 29 V 1 0.71
 30 L 1 0.71
 31 D 1 0.71
 32 Q 1 0.71
 33 N 1 0.71
 34 M 1 0.71
 35 S 1 0.71
 36 I 1 0.71
 37 L 1 0.71
 38 E 1 0.71
 39 G 1 0.71
 40 S 1 0.71
 41 L 1 0.71
 42 G 1 0.71
 43 V 1 0.71
 44 I 1 0.71
 45 P 1 0.71
 46 R 1 0.71
 47 R 1 0.71
 48 V 1 0.71
 49 L 1 0.71
 50 V 1 0.71
 51 H 1 0.71
 52 E 1 0.71
 53 D 1 0.71
 54 D 1 0.71
 55 L 1 0.71
 56 A 1 0.71
 57 G 1 0.71
 58 A 1 0.71
 59 R 1 0.71
 60 R 1 0.71
 61 L 1 0.71
 62 L 1 0.71
 63 T 1 0.71
 64 D 1 0.71
 65 A 1 0.71
 66 G 1 0.71
 67 L 1 0.71
 68 A 1 0.71
 69 H 1 0.71
 70 E 1 0.71
 71 L 1 0.71
 72 R 1 0.71
 73 S 1 0.71
 74 D 1 0.71
 75 D 1 0.71
END