PFRMAT DP TARGET T0350 AUTHOR ROBETTA-GINZU METHOD ROBETTA Domain Prediction Method GINZU METHOD METHOD GINZU method based on scanning for homologs with METHOD structures using PSI-BLAST and 3D-Jury, followed by METHOD searches for sequence families with HMM-PFAM and then METHOD by clusters of sequences in the PSI-BLAST MSA. METHOD Boundary preference function utilizes secondary METHOD structure predictions from PSIPRED, edges of sequences METHOD in the MSA, and occupancy of positions in the MSA. METHOD Regions with homologous structure parsed using a METHOD consensus variant of Taylor's method. METHOD METHOD REFERENCES: METHOD (1) Chivian D, et al. (2003) Proteins 53 Suppl 6:524-33 METHOD (2) Kim DE, et al. (2005) Proteins 61 Suppl 7:193-200 METHOD ------------- MODEL 3 REMARK PARENT N/A REMARK PARSRC artificial REMARK SCORE 0.50 1 M 1 0.50 2 N 1 0.50 3 I 1 0.50 4 E 1 0.50 5 R 1 0.50 6 L 1 0.50 7 T 1 0.50 8 T 1 0.50 9 L 1 0.50 10 Q 1 0.50 11 P 1 0.50 12 V 1 0.50 13 W 1 0.50 14 D 1 0.50 15 R 1 0.50 16 Y 1 0.50 17 D 1 0.50 18 T 1 0.50 19 Q 1 0.50 20 I 1 0.50 21 H 1 0.50 22 N 1 0.50 23 Q 1 0.50 24 K 1 0.50 25 D 1 0.50 26 N 1 0.50 27 D 1 0.50 28 N 1 0.50 29 E 1 0.50 30 V 1 0.50 31 P 1 0.50 32 V 1 0.50 33 H 1 0.50 34 Q 1 0.50 35 V 1 0.50 36 S 1 0.50 37 Y 1 0.50 38 T 1 0.50 39 N 1 0.50 40 L 1 0.50 41 A 1 0.50 42 E 1 0.50 43 M 1 0.50 44 V 1 0.50 45 G 1 0.50 46 E 1 0.50 47 M 1 0.50 48 N 1 0.50 49 K 1 0.50 50 L 1 0.50 51 L 1 0.50 52 E 1 0.50 53 P 1 0.50 54 S 1 0.50 55 Q 1 0.50 56 V 1 0.50 57 H 1 0.50 58 L 1 0.50 59 K 1 0.50 60 F 1 0.50 61 E 1 0.50 62 L 1 0.50 63 H 1 0.50 64 D 1 0.50 65 K 1 0.50 66 L 1 0.50 67 N 1 0.50 68 E 1 0.50 69 Y 1 0.50 70 Y 1 0.50 71 V 1 0.50 72 K 1 0.50 73 V 1 0.50 74 I 1 0.50 75 E 1 0.50 76 D 1 0.50 77 S 1 0.50 78 T 1 0.50 79 N 1 0.50 80 E 1 0.50 81 V 1 0.50 82 I 1 0.50 83 R 1 0.50 84 E 1 0.50 85 I 1 0.50 86 P 1 0.50 87 P 1 0.50 88 K 1 0.50 89 R 1 0.50 90 W 1 0.50 91 L 1 0.50 92 D 1 0.50 93 F 1 0.50 94 Y 1 0.50 95 A 1 0.50 96 A 1 0.50 97 M 1 0.50 98 T 1 0.50 99 E 1 0.50 100 F 1 0.50 101 L 1 0.50 102 G 1 0.50 103 L 1 0.50 104 F 1 0.50 105 V 1 0.50 106 D 1 0.50 107 E 1 0.50 108 K 1 0.50 109 K 1 0.50 110 L 1 0.50 111 E 1 0.50 112 H 1 0.50 113 H 1 0.50 114 H 1 0.50 115 H 1 0.50 116 H 1 0.50 117 H 1 0.50 END