PFRMAT AL
TARGET T0358
REMARK FUGUE AUTOMATIC ALIGNMENT
REMARK ZSCORE=4.91 
REMARK CONFIDENCE: LIKELY    (95% confidence [ ZSCORE>=4.0 ])
REMARK DERIVED FROM HOMSTRAD PROFILE: hs1ny8a
METHOD Environment-specific substitution tables were derived from the structure-based
METHOD alignments in the HOMSTRAD database. Each alignment in HOMSTRAD was converted
METHOD into a scoring template (profile) using the environment-specific substitution 
METHOD tables and structure-dependent gap penalties. The program FUGUE searches
METHOD a sequence or sequence alignment against the library of profiles.
METHOD -------------
MODEL  3
PARENT 1ny8_A
M   1     M     1 
T   2     I     2 
Q   3     E     3 
S   4     D     4 
V   5     P     5 
L   6     M     6 
P  11     E     7 
F  12     N     8 
T  13     N     9 
R  14     E    10 
R  15     I    11 
Q  16     Q    12 
A  17     S    13 
Q  18     V    14 
A  19     L    15 
V  20     M    16 
T  21     N    17 
T  22     A    18 
T  23     L    19 
Y  24     S    20 
S  25     L    21 
N  26     Q    22 
I  27     E    23 
T  28     V    24 
L  29     H    25 
E  30     V    26 
D  31     S    27 
D  32     G    28 
Q  33     D    29 
G  34     G    30 
S  35     S    31 
H  36     H    32 
F  37     F    33 
R  38     Q    34 
L  39     V    35 
V  40     I    36 
V  41     A    37 
R  42     R    47 
D  43     V    48 
T  44     K    49 
E  45     K    50 
G  46     Q    51 
R  47     Q    52 
M  48     T    53 
V  49     V    54 
W  50     Y    55 
R  51     G    56 
A  52     P    57 
W  53     L    58 
N  54     M    59 
F  55     E    60 
E  56     Y    61 
P  57     I    62 
D  58     A    63 
A  59     D    64 
G  60     N    65 
E  61     R    66 
G  62     I    67 
L  63     H    68 
N  64     A    69 
R  65     V    70 
Y  66     S    71 
I  67     I    72 
R  68     K    73 
T  69     A    74 
S  70     Y    75 
G  71     T    76 
I  72     P    77 
R  73     A    78 
T  74     E    79 
D  75     W    80 
T  76     A    81 
A  77     R    82 
T  78     D    83 
R  79     R    84 
L  80     L    90 
E  81     E    91 
H  82     H    92 
H  83     H    93 
H  84     H    94 
H  85     H    95 
H  86     H    96 
H  87     H    97 
TER
END