PFRMAT RR
TARGET T0359
REMARK No remarks
METHOD Contact pairs of residues are predicted by a fully
METHOD automated server using a trained Neural Network.
METHOD The principle component of the encoding for the
METHOD input to the network is pairs of "windows" of
METHOD correlations, generated from a multiple sequence
METHOD alignment, centered on the residue pair of interest.
METHOD Inputs for predicted secondary structure, residue class,
METHOD a residue "affinity" score, sequence length and 
METHOD residue separation are also included.
METHOD   Details of the method may be found in:
METHOD   "Protein contact prediction using patterns of correlation".
METHOD   N. Hamilton, K. Burrage, M. Ragan and T. Huber
METHOD   Proteins:Structure, Function and Bioinformatics. 56 (4), 2004, 679-684
METHOD -------------
MODEL 1
SMSETFDVELTKNVQGLGITIAGYIGDKKL
EPSGIFVKSITKSSAVEHDGRIQIGDQIIA
VDGTNLQGFTNQQAVEVLRHTGQTVLLTLM
RRGETSV
  21   85 0 8 0.540
  21   65 0 8 0.417
   7   37 0 8 0.414
   6   37 0 8 0.403
  10   36 0 8 0.396
   6   89 0 8 0.385
  36   57 0 8 0.376
  21   60 0 8 0.368
  36   85 0 8 0.362
   6   38 0 8 0.361
  11   21 0 8 0.356
  59   85 0 8 0.350
  10   22 0 8 0.336
  10   37 0 8 0.335
  37   43 0 8 0.317
  11   36 0 8 0.315
  58   87 0 8 0.311
  60   85 0 8 0.303
  36   62 0 8 0.291
  10   35 0 8 0.287
  23   39 0 8 0.285
  36   84 0 8 0.281
   6   12 0 8 0.279
  11   23 0 8 0.277
  11   59 0 8 0.277
  59   86 0 8 0.276
  26   43 0 8 0.276
  21   37 0 8 0.275
  36   86 0 8 0.272
  38   60 0 8 0.268
  37   60 0 8 0.267
  37   58 0 8 0.265
  58   86 0 8 0.264
  21   84 0 8 0.263
  21   40 0 8 0.262
  34   66 0 8 0.262
  37   44 0 8 0.261
  60   84 0 8 0.259
  23   35 0 8 0.257
  35   85 0 8 0.257
  21   36 0 8 0.254
  23   71 0 8 0.250
  35   63 0 8 0.247
  10   85 0 8 0.247
   6   59 0 8 0.247
  38   58 0 8 0.246
  36   58 0 8 0.240
   7   38 0 8 0.237
  11   85 0 8 0.236
  40   89 0 8 0.236
  61   85 0 8 0.234
  10   61 0 8 0.233
   8   35 0 8 0.233
  37   49 0 8 0.231
  25   35 0 8 0.230
  36   61 0 8 0.228
   9   36 0 8 0.227
  38   89 0 8 0.224
  64   85 0 8 0.223
  61   86 0 8 0.223
  65   85 0 8 0.223
   8   89 0 8 0.222
  60   86 0 8 0.221
  34   40 0 8 0.221
  12   21 0 8 0.220
  24   59 0 8 0.218
  21   61 0 8 0.217
  40   78 0 8 0.216
  58   85 0 8 0.216
  22   63 0 8 0.215
  37   85 0 8 0.215
  35   62 0 8 0.213
  65   84 0 8 0.212
  60   89 0 8 0.210
  23   34 0 8 0.210
  23   50 0 8 0.210
  23   43 0 8 0.210
  30   44 0 8 0.209
  22   39 0 8 0.209
  60   66 0 8 0.208
  37   57 0 8 0.207
  22   85 0 8 0.207
  58   64 0 8 0.206
  23   91 0 8 0.206
   6   36 0 8 0.204
  60   83 0 8 0.203
  21   58 0 8 0.202
   8   58 0 8 0.202
  35   64 0 8 0.200
  10   60 0 8 0.197
  63   68 0 8 0.196
  35   58 0 8 0.196
  59   87 0 8 0.196
  23   62 0 8 0.195
  37   84 0 8 0.195
  11   60 0 8 0.194
  22   86 0 8 0.194
END