PFRMAT AL TARGET T0359 SGC Target: MPDZ@3, Homo sapiens, 97 res AUTHOR SAM-T99 METHOD This pairwise alignment was produced using the SAM-T99 method METHOD METHOD ------------- Citations (SAM, SAM-T99, HMMs) ----------------- METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis: METHOD Extension and analysis of the basic method, CABIOS 12:95-107, 1996. METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting METHOD remote protein homologies, Bioinformatics 14(10):846-856, 1999. METHOD A. Krogh et al., Hidden Markov models in computational biology: METHOD Applications to protein modeling, JMB 235:1501-1531, Feb 1994. METHOD ------------- MODEL 2 PARENT 2fneC E 4 Q 1956 T 5 C 1957 F 6 K 1958 D 7 S 1959 V 8 I 1960 E 9 T 1961 L 10 L 1962 T 11 E 1963 K 12 R 1964 N 13 G 1965 V 14 P 1966 Q 15 D 1967 G 16 G 1968 L 17 L 1969 G 18 G 1970 I 19 F 1971 T 20 S 1972 I 21 I 1973 A 22 V 1974 G 23 G 1975 Y 24 G 1976 I 25 Y 1977 G 26 G 1978 D 27 S 1979 K 28 P 1980 L 30 H 1981 E 31 G 1982 P 32 D 1983 S 33 L 1984 G 34 P 1985 I 35 I 1986 F 36 Y 1987 V 37 V 1988 K 38 K 1989 S 39 T 1990 I 40 V 1991 T 41 F 1992 K 42 A 1993 S 43 K 1994 S 44 G 1995 A 45 A 1996 V 46 A 1997 E 47 S 1998 H 48 E 1999 D 49 D 2000 G 50 G 2001 R 51 R 2002 I 52 L 2003 Q 53 K 2004 I 54 R 2005 G 55 G 2006 D 56 D 2007 Q 57 Q 2008 I 58 I 2009 I 59 I 2010 A 60 A 2011 V 61 V 2012 D 62 N 2013 G 63 G 2014 T 64 Q 2015 N 65 S 2016 L 66 L 2017 Q 67 E 2018 G 68 G 2019 F 69 V 2020 T 70 T 2021 N 71 H 2022 Q 72 E 2023 Q 73 E 2024 A 74 A 2025 V 75 V 2026 E 76 A 2027 V 77 I 2028 L 78 L 2029 R 79 K 2030 H 80 R 2031 T 81 T 2032 G 82 K 2033 Q 83 G 2034 T 84 T 2035 V 85 V 2036 L 86 T 2037 L 87 L 2038 T 88 M 2039 L 89 V 2040 M 90 L 2041 R 91 S 2042 R 92 S 2043 G 93 D 2044 E 94 E 2045 TER END