PFRMAT AL
TARGET T0359 SGC Target: MPDZ@3, Homo sapiens, 97 res
AUTHOR SAM-T99
METHOD This pairwise alignment was produced using the SAM-T99 method
METHOD 
METHOD  ------------- Citations (SAM, SAM-T99, HMMs) -----------------
METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
METHOD   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
METHOD   remote protein homologies, Bioinformatics 14(10):846-856, 1999.
METHOD A. Krogh et al., Hidden Markov models in computational biology:
METHOD   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
METHOD -------------
MODEL 3
PARENT 1rgrA
E 4    E 62
T 5    Y 63
F 6    E 64
D 7    E 65
V 8    I 66
E 9    T 67
L 10    L 68
T 11    E 69
K 12    R 70
N 13    G 71
V 14    N 72
Q 15    S 73
G 16    G 74
L 17    L 75
G 18    G 76
I 19    F 77
T 20    S 78
I 21    I 79
A 22    A 80
G 23    G 81
Y 24    G 82
I 25    T 83
G 26    D 84
D 27    P 86
K 28    H 87
K 29    I 88
L 30    G 89
E 31    D 90
P 32    D 91
S 33    P 92
G 34    S 93
I 35    I 94
F 36    F 95
V 37    I 96
K 38    T 97
S 39    K 98
I 40    I 99
T 41    I 100
K 42    P 101
S 43    G 102
S 44    G 103
A 45    A 104
V 46    A 105
E 47    A 106
H 48    Q 107
D 49    D 108
G 50    G 109
R 51    R 110
I 52    L 111
Q 53    R 112
I 54    V 113
G 55    N 114
D 56    D 115
Q 57    S 116
I 58    I 117
I 59    L 118
A 60    F 119
V 61    V 120
D 62    N 121
G 63    E 122
T 64    V 123
N 65    D 124
L 66    V 125
Q 67    R 126
G 68    E 127
F 69    V 128
T 70    T 129
N 71    H 130
Q 72    S 131
Q 73    A 132
A 74    A 133
V 75    V 134
E 76    E 135
V 77    A 136
L 78    L 137
R 79    K 138
H 80    E 139
T 81    A 140
G 82    G 141
Q 83    S 142
T 84    I 143
V 85    V 144
L 86    R 145
L 87    L 146
T 88    Y 147
L 89    V 148
M 90    M 149
R 91    R 150
R 92    R 151
G 93    K 152
E 94    P 153
TER
END