PFRMAT AL
TARGET T0359 SGC Target: MPDZ@3, Homo sapiens, 97 res
AUTHOR SAM-T99
METHOD This pairwise alignment was produced using the SAM-T99 method
METHOD 
METHOD  ------------- Citations (SAM, SAM-T99, HMMs) -----------------
METHOD R. Hughey, A. Krogh, Hidden Markov models for sequence analysis:
METHOD   Extension and analysis of the basic method, CABIOS 12:95-107, 1996.
METHOD K. Karplus, C. Barrett, R. Hughey, Hidden Markov models for detecting
METHOD   remote protein homologies, Bioinformatics 14(10):846-856, 1999.
METHOD A. Krogh et al., Hidden Markov models in computational biology:
METHOD   Applications to protein modeling, JMB 235:1501-1531, Feb 1994.
METHOD -------------
MODEL 5
PARENT 1iu0A
E 4    E 2
T 5    Y 3
F 6    E 4
D 7    E 5
V 8    I 6
E 9    T 7
L 10    L 8
T 11    E 9
K 12    R 10
N 13    G 11
V 14    N 12
Q 15    S 13
G 16    G 14
L 17    L 15
G 18    G 16
I 19    F 17
T 20    S 18
I 21    I 19
A 22    A 20
G 23    G 21
Y 24    G 22
I 25    T 23
G 26    D 24
D 27    P 26
K 28    H 27
K 29    I 28
L 30    G 29
E 31    D 30
P 32    D 31
S 33    P 32
G 34    S 33
I 35    I 34
F 36    F 35
V 37    I 36
K 38    T 37
S 39    K 38
I 40    I 39
T 41    I 40
K 42    P 41
S 43    G 42
S 44    G 43
A 45    A 44
V 46    A 45
E 47    A 46
H 48    Q 47
D 49    D 48
G 50    G 49
R 51    R 50
I 52    L 51
Q 53    R 52
I 54    V 53
G 55    N 54
D 56    D 55
Q 57    S 56
I 58    I 57
I 59    L 58
A 60    F 59
V 61    V 60
D 62    N 61
G 63    E 62
T 64    V 63
N 65    D 64
L 66    V 65
Q 67    R 66
G 68    E 67
F 69    V 68
T 70    T 69
N 71    H 70
Q 72    S 71
Q 73    A 72
A 74    A 73
V 75    V 74
E 76    E 75
V 77    A 76
L 78    L 77
R 79    K 78
H 80    E 79
T 81    A 80
G 82    G 81
Q 83    S 82
T 84    I 83
V 85    V 84
L 86    R 85
L 87    L 86
T 88    Y 87
L 89    V 88
M 90    M 89
R 91    R 90
R 92    R 91
TER
END