CASP ROLL: the Community Wide Experiment on the
Critical Assessment of Techniques for Protein Structure Prediction on rolling basis

Target Submission Instructions

General

For the experiment to succeed, it is essential that we obtain the help of the experimental community. We invite protein crystallographers and NMR spectroscopists to provide us with information about sequences likely hard for structure modeling that they are working on and can keep on hold for at least 4 weeks after submitting to CASP.

What information we need

We need minimum information about your target (sequence and estimated date of its public release) and your contact information. To gather your contact information you will be asked to register so that we can get in touch with you in case when additional information is needed about your target or to get the coordinates after the prediction of the target is closed.

How to submit a target

There are three ways to do that.

  • You can submit a target using our Target Submission Form.

    If you have not registered with the Prediction Center yet, you would have to do so first. This is a one-time procedure, where you will be asked to provide your contact information. If you are registered with the Prediction Center, you will have to login and supply only the information about the target.

  • Email.

    As alternative to the submission through the Target Submission Form, you can simply send an email to casp AT predictioncenter DOT org containing target's sequence and estimated date of its public release. Information on how the structure was solved (method), protein name, organism name, known ligands, etc. would also be helpful.

  • Marking PDB deposition as "CASP target" in PDB's ADIT system.

    A special arrangement has been negotiated with the PDB to allow structure depositors to designate their structures as "CASP target" in the PDB's ADIT system. This way it is possible to submit a structure without any delays. It will not be released until after a certain period of time (currently 8 weeks). In this case there is no need to submit directly to CASP (using options 1 or 2) as in this case we will receive a notification from the PDB.

Once submitted, we will let you know within 3 days on whether we will use your suggested target for CASP ROLL. In case we take your structure as a CASP ROLL target, we would ask you to block public access to any structural information about your protein.
Protein Structure Prediction Center
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