

PFRMAT ABF1
TARGET T0020
AUTHOR 6792-8330-8583 D.Gerloff & F.Cohen, UCSF, gerloff@cgl.ucsf.edu
AUTHOR 9774-5781-2699 S.Benner, UF and ETH, benner@chem.ethz.ch
REMARK (This prediction results from collaboration between the two groups Benner&Cohen.)
REMARK Secondary structure was predicted according to Benner & Gerloff REMARK Probabilities for the three-state secondary structure prediction reflect
REMARK (a) center or ending positions in a predicted sec.str. element,
REMARK (b) possible sec.str. alternatives
REMARK THE SECONDARY STRUCTURE PREDICTION (1.1) ALONE WAS SUBMITTED 
REMARK (ACCEPTION CODE T0020AB763)
REMARK 40 MINUTES AGO. IF COMPATIBLE WITH THE DEADLINE, WE WOULD LIKE
REMARK THESE TWO SUPERSECONDARY STRUCTURE MODELS. THEY ARE BASED ON
REMARK FUNCTIONAL CONSIDERATIONS (CONSTRUCTION OF A HEME BINDING SITE)
REMARK WE BELIEVE THE FOLD OF THE CORE PART (SEC STR 5-16 IN OUR PREDICTION)
REMARK TO FOLD IN A DOUBLY WOUND ALPHA/BETA/ALPHA LAYER STRUCTURE WITH
REMARK A (PREDOMINATELY OR COMPLETELY) PARALLEL BETA SHEET. WE SLIGHTLY
REMARK PREFER THE TOPOLOGIES DESCRIBED BELOW (MODEL 1 321465, MODEL 2 321456)
REMARK THE SUPERSECONDARY STRUCTURE IS AT LOW RELIABILITY AS WE COULD
REMARK NOT TEST THE HYPOTHESIS ON A COORDINATE MODEL (COMPUTER PROBLEMS) 
REMARK APOLOGIES FOR THE DELAY
BEGDAT 1.1  1  1.00 
SS 310
M C  0.00
S C  0.00
R C  0.00
K C  0.00
K H  0.50
M H  0.60
G H  0.60
L H  0.60
L H  0.60
V H  0.60
M H  0.60
A H  0.60
Y H  0.60
G H  0.60
T C  0.40
P C  1.00
Y C  1.00
K H  0.70
E H  1.00
E H  1.00
D H  1.00
I H  1.00
E H  1.00
R H  1.00
Y H  1.00
Y H  1.00
T H  1.00
H H  1.00
I H  1.00
R H  0.70
R H  0.70
G C  0.60
R C  0.60
K C  0.80
P C  0.80
E C  0.80
P C  0.80
E H  0.50
M H  0.50
L H  0.50
Q H  0.50
D H  0.50
L H  1.00
K H  1.00
D H  1.00
R H  1.00
Y H  0.80
E H  0.70
A H  0.70
I H  0.70
G H  0.50
G C  0.90
I C  1.00
S C  1.00
P H  0.60
L H  1.00
A H  1.00
Q H  1.00
I H  1.00
T H  1.00
E H  1.00
Q H  1.00
Q H  1.00
A H  1.00
H H  1.00
N H  1.00
L H  1.00
E H  1.00
Q H  1.00
H H  1.00
L H  1.00
N H  1.00
E H  1.00
I H  1.00
Q C  0.60
D C  0.80
E C  0.80
I C  0.80
T C  0.80
F C  0.50
K E  0.60
A E  0.60
Y E  0.60
I E  0.60
G E  0.60
L E  0.60
K C  0.60
H C  0.60
I C  1.00
E C  1.00
P C  0.90
F H  0.50
I H  1.00
E H  1.00
D H  1.00
A H  1.00
V H  1.00
A H  1.00
E H  1.00
M H  1.00
H H  1.00
K H  1.00
D H  0.60
G C  0.60
I C  0.40
T C  0.40
E C  0.40
A E  0.50
V E  0.60
S E  0.60
I E  0.60
V C  0.50
L C  0.50
A C  0.50
P C  0.50
H C  0.50
F C  0.50
S C  0.50
T C  0.50
F C  0.50
S C  0.50
V C  0.50
Q C  0.60
S C  0.60
Y C  0.60
N C  0.70
K C  0.70
R H  1.00
A H  1.00
K H  1.00
E H  1.00
E H  1.00
A H  1.00
E H  0.90
K H  0.90
L H  0.60
G C  0.80
G C  0.80
L C  0.60
T C  0.50
I E  0.60
T E  0.60
S E  0.60
V E  0.60
E E  0.60
S E  0.60
W E  0.60
Y C  0.60
D C  0.60
E C  0.50
P H  0.60
K H  1.00
F H  1.00
V H  1.00
T H  1.00
Y H  1.00
W H  1.00
V H  1.00
D H  1.00
R H  1.00
V H  1.00
K H  1.00
E H  1.00
T C  0.70
Y C  0.70
A C  0.70
S C  0.70
M C  0.70
P C  1.00
E C  1.00
D C  1.00
E C  1.00
R C  1.00
E C  1.00
N C  1.00
A C  0.50
M E  0.50
L E  0.50
I E  0.50
V E  0.50
S C  0.50
A C  0.50
H C  0.50
S C  0.50
L C  0.50
P C  1.00
E C  0.50
K C  0.50
I C  0.50
K C  0.50
E C  1.00
F C  1.00
G C  1.00
D C  1.00
P C  1.00
Y C  1.00
P C  0.60
D H  1.00
Q H  1.00
L H  1.00
H H  1.00
E H  1.00
S H  1.00
A H  1.00
K H  1.00
L H  1.00
I H  1.00
A H  1.00
E H  1.00
G H  1.00
A H  1.00
G H  1.00
V C  0.50
S C  0.70
E C  0.70
Y E  0.70
A E  0.70
V E  0.70
G E  0.70
W E  0.70
Q C  0.50
S C  0.50
E C  0.50
G C  0.50
N C  0.50
T C  0.80
P C  0.80
D C  0.80
P C  0.60
W C  0.50
L C  0.50
G C  0.80
P C  0.50
D H  1.00
V H  1.00
Q H  1.00
D H  1.00
L H  1.00
T H  1.00
R H  1.00
D H  1.00
L H  1.00
F H  1.00
E C  0.50
Q C  0.90
K C  0.90
G C  0.90
Y C  0.90
Q C  0.90
A C  0.50
F E  0.80
V E  0.80
Y E  0.80
V E  0.80
P C  0.80
V C  0.80
G C  0.60
F H  0.80
V H  1.00
A H  1.00
D H  1.00
H H  1.00
L H  1.00
E H  1.00
V H  1.00
L H  1.00
Y H  1.00
D H  1.00
N H  1.00
D H  0.60
Y C  1.00
E C  0.40
C C  1.00
K C  1.00
V C  0.60
V H  0.60
T H  0.60
D H  0.60
D H  0.60
I H  0.60
G H  0.70
A H  0.70
S H  0.70
Y H  0.70
Y H  0.70
R H  0.70
P H  0.50
E C  1.00
M C  1.00
P C  1.00
N C  1.00
A C  1.00
K C  1.00
P H  0.50
E H  1.00
F H  1.00
I H  1.00
D H  1.00
A H  1.00
L H  1.00
A H  1.00
T H  1.00
V H  1.00
V H  1.00
L H  0.70
K H  0.70
K C  0.00
L C  0.00
G C  0.00
R C  0.00
ENDDAT 1.1
BEGDAT 2.1  2  0.30 1
104
  1   2  --  0.00   0   0  0.00
  1   3  --  0.00   0   0  0.00
  1   4  --  0.00   0   0  0.00
  1   5  --  0.00   0   0  0.00
  1   6  --  0.00   0   0  0.00
  1   7  --  0.00   0   0  0.00
  1   8  --  0.00   0   0  0.00
  1   9  --  0.00   0   0  0.00
  1  10  --  0.00   0   0  0.00
  1  11  --  0.00   0   0  0.00
  1  12  --  0.00   0   0  0.00
  1  13  --  0.00   0   0  0.00
  1  14  --  0.00   0   0  0.00
  1  15  --  0.00   0   0  0.00
  1  16  --  0.00   0   0  0.00
  1  17  --  0.00   0   0  0.00
  1  18  --  0.00   0   0  0.00
  2   3  --  0.00   0   0  0.00
  2   4  --  0.00   0   0  0.00
  2   5  --  0.00   0   0  0.00
  2   6  --  0.00   0   0  0.00
  2   7  --  0.00   0   0  0.00
  2   8  --  0.00   0   0  0.00
  2   9  --  0.00   0   0  0.00
  2  10  --  0.00   0   0  0.00
  2  11  --  0.00   0   0  0.00
  2  12  --  0.00   0   0  0.00
  2  13  --  0.00   0   0  0.00
  2  14  --  0.00   0   0  0.00
  2  15  --  0.00   0   0  0.00
  2  16  --  0.00   0   0  0.00
  2  17  --  0.00   0   0  0.00
  2  18  --  0.00   0   0  0.00
  3   4  --  0.00   0   0  0.00
  3   5  --  0.00   0   0  0.00
  3   6  --  0.00   0   0  0.00
  3   7  --  0.00   0   0  0.00
  3   8  --  0.00   0   0  0.00
  3   9  --  0.00   0   0  0.00
  3  10  --  0.00   0   0  0.00
  3  11  --  0.00   0   0  0.00
  3  12  --  0.00   0   0  0.00
  3  13  --  0.00   0   0  0.00
  3  14  --  0.00   0   0  0.00
  3  15  --  0.00   0   0  0.00
  3  16  --  0.00   0   0  0.00
  3  17  --  0.00   0   0  0.00
  3  18  --  0.00   0   0  0.00
  4   5  --  0.00   0   0  0.00
  4   6  --  0.00   0   0  0.00
  4   7  --  0.00   0   0  0.00
  4   8  --  0.00   0   0  0.00
  4   9  --  0.00   0   0  0.00
  4  10  --  0.00   0   0  0.00
  4  11  --  0.00   0   0  0.00
  4  12  --  0.00   0   0  0.00
  4  13  --  0.00   0   0  0.00
  4  14  --  0.00   0   0  0.00
  4  15  --  0.00   0   0  0.00
  4  16  --  0.00   0   0  0.00
  4  17  --  0.00   0   0  0.00
  4  18  --  0.00   0   0  0.00
  5   6  OS  1.00   0   0  0.00
  5   7  KK  1.00   0   0  0.00
  5  11  KK  1.00   0   0  0.00
  5  17  --  0.00   0   0  0.00
  5  18  --  0.00   0   0  0.00
  6   7  OS  1.00   0   0  0.00
  6  17  --  0.00   0   0  0.00
  6  18  --  0.00   0   0  0.00
  7   8  OS  1.00   0   0  0.00
  7   9  KK  1.00   0   0  0.00
  7  10  OS  1.00   0   0  0.00
  7  17  --  0.00   0   0  0.00
  7  18  --  0.00   0   0  0.00
  8   9  OS  1.00   0   0  0.00
  8  17  --  0.00   0   0  0.00
  8  18  --  0.00   0   0  0.00
  9  10  OS  1.00   0   0  0.00
  9  17  --  0.00   0   0  0.00
  9  18  --  0.00   0   0  0.00
 10  11  --  0.60   0   0  0.00
 10  17  --  0.00   0   0  0.00
 10  18  --  0.00   0   0  0.00
 11  12  OS  1.00   0   0  0.00
 11  13  KK  1.00   0   0  0.00
 11  17  --  0.00   0   0  0.00
 11  18  --  0.00   0   0  0.00
 12  13  OS  1.00   0   0  0.00
 12  17  --  0.00   0   0  0.00
 12  18  --  0.00   0   0  0.00
 13  17  --  0.00   0   0  0.00
 13  14  OS  1.00   0   0  0.00
 13  15  KK  1.00   0   0  0.00
 13  18  --  0.00   0   0  0.00
 14  15  OS  1.00   0   0  0.00
 14  17  --  0.00   0   0  0.00
 14  18  --  0.00   0   0  0.00
 15  16  RT  0.40   0   0  0.00
 15  17  --  0.00   0   0  0.00
 15  18  --  0.00   0   0  0.00
 16  17  --  0.00   0   0  0.00
 16  18  --  0.00   0   0  0.00
 17  18  --  0.00   0   0  0.00
ENDDAT 2.1
END

