
PFRMAT FRV1
AUTHOR 6776-3217-5205 M J E Sternberg
AUTHOR 6776-3217-5205 Imperial Cancer Research Fund
AUTHOR 6776-3217-5205 m.sternberg@icrf.icnet.uk
AUTHOR 6776-3217-5205 Details of all workers see below
REMARK ======================================================================
REMARK Threading results from FOLDFIT:
REMARK 
REMARK Work by Michael J E Sternberg (1), Paul A Bates (1), Andrew Lyall (2)
REMARK Robert B Russell (1), Mansoor A S Saqi (2) and Roger Sayle (2)
REMARK (1) Biomolecular Modelling Laboratory
REMARK Imperial Cancer Research Fund
REMARK Lincoln Inn Fields, London, WC2A 3PX, UK
REMARK Tel +44 - 171 - 269- 3565
REMARK Fax +44 - 171 - 269 - 3479
REMARK URL http://bonsai.lif.icnet.uk
REMARK E-mail m.sternberg@icrf.icnet.uk
REMARK E-mail p.bates@icrf.icnet.uk 
REMARK E-mail r.russell@icrf.icnet.uk
REMARK (2) Bioinformatics Group
REMARK Glaxo Medicines Research Centre
REMARK Gunnels Wood Road
REMARK Stevenage, Herts, SG1 2NY, UK
REMARK Tel +44 -1438 - 745745
REMARK Tel +44 -1438 - 763082
REMARK E-mail al28044@ggr.co.uk
REMARK E-mail mass15599@ggr.co.uk
REMARK E-mail ras32425@ggr.co.uk
REMARK ======================================================================
REMARK                       FOLDFIT
REMARK                       =======
REMARK The program was jointly and equally developed by the above two groups .
REMARK The program matches the (1) sequence, (2) predicted secondary structure
REMARK and (3) predicted burial of the unknown sequence
REMARK against a database of known structures detailing
REMARK (1) sequence, (2) actual and predicted secondary structure
REMARK and (3) actual and predicted burial.
REMARK The matches are scored by matrices empirically derived
REMARK from comparison of analogous and distantly homologous protein folds.
REMARK Searching is by a type I dynamic programming algorithm
REMARK with afine secondary-structure dependant gap penalties.
REMARK ======================================================================
REMARK ======================================================================
REMARK T0002 study
REMARK ======================================================================
REMARK
REMARK (1) T0002 clearly comprises two domains.  Homology searches 
REMARK with the entire T0002 sequences found strong homology between 
REMARK the N-terminal portion of T0002 and serine deaminase and a 
REMARK weaker homology with the beta subunit of tryptophan synthase 
REMARK (WSY-B).  The CASP organisers identified the N-terminal 
REMARK homology with WSY-B, and only the C-terminal half was to be 
REMARK the subject of ab initio/fold recognition entries.  The 
REMARK homology between WSY-B and the N-terminal domain of T0002 is 
REMARK such that the alignment may well be inaccurate.  The end of 
REMARK the N-terminal domain was thus defined by the closer homology 
REMARK to serine deaminase.  The homology with WSY-B and the domain 
REMARK boundary were further confirmed by applying FOLDFIT to the
REMARK N-terminal domain of T0002.
REMARK 
REMARK (2) A consensus secondary structure assignment from multiply
REMARK aligned homologous sequences was made using results of DSC (King
REMARK & Sternberg, T0002 CASP Submission) PHD (Rost & Sander), SOPMA
REMARK (Geourjon & Deleage), NNPREDICT (Kneller, Harris & Cohen), 
REMARK SSPRED (Mehta, Heringa & Argos) together with visual inspection.
REMARK A consensus prediction of secondary structure, together with
REMARK accessibilities from PHD was used as input to FOLDFIT.
REMARK 
REMARK (3) The C-terminal domain of T0002 (T0002-C) was scanned by 
REMARK FOLDFIT and  the rank order of the PDB codes matched by FOLDFIT 
REMARK are listed below in decreasing order of probability.
REMARK 
REMARK (4) The top four scoring structures were identified as probable
REMARK candidates for the fold of T0002-C.  The probabilities 
REMARK for the 4 hits reflect the order of matches, though 
REMARK the actual probability values chosen subjectively.
REMARK A higher probability was assigned to the top scoring hit, becuase
REMARK it had intriguingly matched the ALPHA subunit of tryptophan synthase 
REMARK (WSY-A) with a distinct separation from the second ranked match. Viz.,
REMARK 
REMARK    ID      Score   Len1 Len2
REMARK   1ubsa    3059.0   184 258
REMARK   1tpfa    2694.0   184 251
REMARK    5p21    2661.0   184 167
REMARK   1garb    2640.0   184 194
REMARK    1dri    2608.0   184 272
REMARK    1chd    2582.0   184 199
REMARK          <etc.>
REMARK
REMARK Of the top ten scoring matches, 4/10 were alpha/beta barrel
REMARK structures and 4/10 were P-loop or Rossmann-like doubly
REMARK wound alpha/beta folds.  The four submitted matches
REMARK comprise two represenatives from each of these fold types.
REMARK
REMARK (5) For each matched fold, two alignments were submitted, the 
REMARK optimal and the first sub-optimal using the algorithm of Saqi &
REMARK Sternberg (J.Mol.Biol. 219, 727-732, 1991). The probabilities   
REMARK for the alignments were chosen subjectively.
REMARK 
REMARK ======================================================================
REMARK =====================================================================
REMARK >P1;T0002
REMARK Threonine Deaminase E. coli
SEQRES T0002 MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILV
SEQRES T0002 KREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSAR
SEQRES T0002 LGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQG
SEQRES T0002 FTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLI
SEQRES T0002 KQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDE
SEQRES T0002 TFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI
SEQRES T0002 ALHNIRGERLAHILSGANVNFHGLRYVSERCELGEQREALLAVTIPEEKG
SEQRES T0002 SFLKFCQLLGGRSVTEFNYRFADAKNACIFVGVRLSRGLEERKEILQMLN
SEQRES T0002 DGGYSVVDLSDDEMAKLHVRYMVGGRPSHPLQERLYSFEFPESPGALLRF
SEQRES T0002 LNTLGTYWNISLFHYRSHGTDYGRVLAAFELGDHEPDFETRLNELGYDCH
SEQRES T0002 DETNNPAFRFFLAG
REMARK =====================================================================
REMARK 
REMARK >P1;T0002
REMARK 1st domain residues 1 - 331
REMARK MADSQPLSGAPEGAEYLRAVLRAPVYEAAQVTPLQKMEKLSSRLDNVILV 
REMARK KREDRQPVHSFKLRGAYAMMAGLTEEQKAHGVITASAGNHAQGVAFSSAR 
REMARK LGVKALIVMPTATADIKVDAVRGFGGEVLLHGANFDEAKAKAIELSQQQG 
REMARK FTWVPPFDHPMVIAGQGTLALELLQQDAHLDRVFVPVGGGGLAAGVAVLI 
REMARK KQLMPQIKVIAVEAEDSACLKAALDAGHPVDLPRVGLFAEGVAVKRIGDE 
REMARK TFRLCQEYLDDIITVDSDAICAAMKDLFEDVRAVAEPSGALALAGMKKYI 
REMARK ALHNIRGERLAHILSGANVNFHGLRYVSERC*
REMARK 
REMARK >P1;T0002
REMARK 2nd domain 332 - 514
REMARK ELGEQREALLAVTIPEEKGSFLKFCQLLGGRSVTEFNYRFADAKNACIFV
REMARK GVRLSRGLEERKEILQMLNDGGYSVVDLSDDEMAKLHVRYMVGGRPSHPL
REMARK QERLYSFEFPESPGALLRFLNTLGTYWNISLFHYRSHGTDYGRVLAAFEL
REMARK GDHEPDFETRLNELGYDCHDETNNPAFRFFLAG*
REMARK ===========================================================
REMARK Domain assignment by homology to tryptophan synthetase
SEQSUB T0002 1    1  331 
SEQSUB T0002 2  332  514
REMARK ===========================================================
TSCORE T0002 2 0.40 1UBS A 0
TSCORE T0002 2 0.20 1TPF A 0
TSCORE T0002 2 0.20 5P21 - 0
TSCORE T0002 2 0.20 1GAR B 0
TSCORE T0002 2 0.00 1DRI - 0
TSCORE T0002 2 0.00 1CHD - 0
TSCORE T0002 2 0.00 1NFP - 0
TSCORE T0002 2 0.00 1DBS - 0
TSCORE T0002 2 0.00 1TML - 0
TSCORE T0002 2 0.00 1UDG - 0
TSCORE T0002 2 0.00 1ORA - 0
TSCORE T0002 2 0.00 1CNV - 0
TSCORE T0002 2 0.00 2RN2 - 0
TSCORE T0002 2 0.00 1NIP B 0
TSCORE T0002 2 0.00 1SCU A 0
TSCORE T0002 2 0.00 1PDA - 0
TSCORE T0002 2 0.00 1CAJ - 0
TSCORE T0002 2 0.00 2LAO - 0
TSCORE T0002 2 0.00 1LFA A 0
TSCORE T0002 2 0.00 1NAL 1 0
TSCORE T0002 2 0.00 1HDR - 0
TSCORE T0002 2 0.00 1HUR A 0
TSCORE T0002 2 0.00 1CND - 0
TSCORE T0002 2 0.00 1OPR - 0
TSCORE T0002 2 0.00 1CSE E 0
TSCORE T0002 2 0.00 1EDT - 0
TSCORE T0002 2 0.00 1FNB - 0
TSCORE T0002 2 0.00 1DEA A 0
TSCORE T0002 2 0.00 1ENY - 0
TSCORE T0002 2 0.00 1AK3 A 0
TSCORE T0002 2 0.00 1GLQ A 0
TSCORE T0002 2 0.00 1OFV - 0
TSCORE T0002 2 0.00 1HDC A 0
TSCORE T0002 2 0.00 1ADS - 0
TSCORE T0002 2 0.00 4BLM A 0
TSCORE T0002 2 0.00 1DSB A 0
TSCORE T0002 2 0.00 1HAN - 0
TSCORE T0002 2 0.00 3PGM - 0
TSCORE T0002 2 0.00 1SGT - 0
TSCORE T0002 2 0.00 1ABK - 0
TSCORE T0002 2 0.00 1REC - 0
TSCORE T0002 2 0.00 8DFR - 0
TSCORE T0002 2 0.00 3MDS A 0
TSCORE T0002 2 0.00 1TLF A 0
TSCORE T0002 2 0.00 1HMP A 0
TSCORE T0002 2 0.00 1ERI A 0
TSCORE T0002 2 0.00 1DIH - 0
TSCORE T0002 2 0.00 1CSN - 0
TSCORE T0002 2 0.00 1SE2 - 0
TSCORE T0002 2 0.00 1BBP A 0
TSCORE T0002 2 0.00 2PIA - 0
TSCORE T0002 2 0.00 2TCT - 0
TSCORE T0002 2 0.00 1AHC - 0
TSCORE T0002 2 0.00 1AAK - 0
TSCORE T0002 2 0.00 1TBP A 0
TSCORE T0002 2 0.00 1GLT - 0
TSCORE T0002 2 0.00 1L92 - 0
TSCORE T0002 2 0.00 1ASU - 0
TSCORE T0002 2 0.00 1YPT A 0
TSCORE T0002 2 0.00 1GP1 A 0
TSCORE T0002 2 0.00 1IRK - 0
TSCORE T0002 2 0.00 8ABP - 0
TSCORE T0002 2 0.00 1XYZ A 0
TSCORE T0002 2 0.00 3CLA - 0
TSCORE T0002 2 0.00 1CSM A 0
TSCORE T0002 2 0.00 1EAF - 0
TSCORE T0002 2 0.00 2HAD - 0
TSCORE T0002 2 0.00 1COL A 0
TSCORE T0002 2 0.00 2HFT - 0
TSCORE T0002 2 0.00 2CPL - 0
TSCORE T0002 2 0.00 1CFB - 0
TSCORE T0002 2 0.00 1FCS - 0
TSCORE T0002 2 0.00 1TYS - 0
TSCORE T0002 2 0.00 1CTC - 0
TSCORE T0002 2 0.00 1NAR - 0
TSCORE T0002 2 0.00 2LIV - 0
TSCORE T0002 2 0.00 2HNP - 0
TSCORE T0002 2 0.00 1BPB - 0
TSCORE T0002 2 0.00 1SBP - 0
TSCORE T0002 2 0.00 2DLN - 0
TSCORE T0002 2 0.00 2DNJ A 0
TSCORE T0002 2 0.00 1CUS - 0
TSCORE T0002 2 0.00 1CPC L 0
TSCORE T0002 2 0.00 1ICE A 0
TSCORE T0002 2 0.00 1PFK A 0
TSCORE T0002 2 0.00 1RVE A 0
TSCORE T0002 2 0.00 4FXN - 0
TSCORE T0002 2 0.00 2SCP A 0
TSCORE T0002 2 0.00 1DAA A 0
TSCORE T0002 2 0.00 1FCD C 0
TSCORE T0002 2 0.00 4TS1 A 0
TSCORE T0002 2 0.00 1MML - 0
TSCORE T0002 2 0.00 2REB - 0
TSCORE T0002 2 0.00 1EMD - 0
TSCORE T0002 2 0.00 1THT A 0
TSCORE T0002 2 0.00 1TSR A 0
TSCORE T0002 2 0.00 3GAP A 0
TSCORE T0002 2 0.00 3ECA A 0
TSCORE T0002 2 0.00 1HLB - 0
TSCORE T0002 2 0.00 1LKI - 0
TSCORE T0002 2 0.00 1CNS A 0
TSCORE T0002 2 0.00 1PLQ - 0
TSCORE T0002 2 0.00 1CAU B 0
TSCORE T0002 2 0.00 1MLA - 0
TSCORE T0002 2 0.00 1CID - 0
TSCORE T0002 2 0.00 1MAT - 0
TSCORE T0002 2 0.00 1DIS - 0
TSCORE T0002 2 0.00 1HUW - 0
TSCORE T0002 2 0.00 1WHT A 0
TSCORE T0002 2 0.00 1GHR - 0
TSCORE T0002 2 0.00 2PRD - 0
TSCORE T0002 2 0.00 1ITG - 0
TSCORE T0002 2 0.00 1HMY - 0
TSCORE T0002 2 0.00 1KNB - 0
TSCORE T0002 2 0.00 1HSB A 0
TSCORE T0002 2 0.00 1PTA - 0
TSCORE T0002 2 0.00 2APD - 0
TSCORE T0002 2 0.00 4GCR - 0
TSCORE T0002 2 0.00 1IAG - 0
TSCORE T0002 2 0.00 1CPC A 0
TSCORE T0002 2 0.00 1FRP A 0
TSCORE T0002 2 0.00 1IAA - 0
TSCORE T0002 2 0.00 1AYH - 0
TSCORE T0002 2 0.00 1AEP - 0
TSCORE T0002 2 0.00 1RCI - 0
TSCORE T0002 2 0.00 1PPN - 0
TSCORE T0002 2 0.00 1APM E 0
TSCORE T0002 2 0.00 1ASH - 0
TSCORE T0002 2 0.00 1PBN - 0
TSCORE T0002 2 0.00 1PHR - 0
TSCORE T0002 2 0.00 1CYN A 0
TSCORE T0002 2 0.00 1SCS - 0
TSCORE T0002 2 0.00 1PVC 3 0
TSCORE T0002 2 0.00 1GDI - 0
TSCORE T0002 2 0.00 1AMP - 0
TSCORE T0002 2 0.00 1PNK A 0
TSCORE T0002 2 0.00 1ADD - 0
TSCORE T0002 2 0.00 1AFA 1 0
TSCORE T0002 2 0.00 1HSA A 0
TSCORE T0002 2 0.00 1EZM - 0
TSCORE T0002 2 0.00 1MMO G 0
TSCORE T0002 2 0.00 1PRR - 0
TSCORE T0002 2 0.00 1BDM A 0
TSCORE T0002 2 0.00 1GD1 O 0
TSCORE T0002 2 0.00 1MFA - 0
TSCORE T0002 2 0.00 1FBA A 0
TSCORE T0002 2 0.00 1GPC - 0
TSCORE T0002 2 0.00 1AXN - 0
TSCORE T0002 2 0.00 1PVC 1 0
TSCORE T0002 2 0.00 1COB A 0
TSCORE T0002 2 0.00 3CHY - 0
TSCORE T0002 2 0.00 1BAM - 0
TSCORE T0002 2 0.00 9LDT A 0
TSCORE T0002 2 0.00 2PCD A 0
TSCORE T0002 2 0.00 1TIE - 0
TSCORE T0002 2 0.00 2CYP - 0
TSCORE T0002 2 0.00 1ILK - 0
TSCORE T0002 2 0.00 1BGC - 0
TSCORE T0002 2 0.00 4FX2 - 0
TSCORE T0002 2 0.00 1LBA - 0
TSCORE T0002 2 0.00 1ESL - 0
TSCORE T0002 2 0.00 1GPR - 0
TSCORE T0002 2 0.00 2PCD M 0
TSCORE T0002 2 0.00 1BMV 1 0
TSCORE T0002 2 0.00 3HHR B 0
TSCORE T0002 2 0.00 1PYP - 0
TSCORE T0002 2 0.00 3SDH A 0
TSCORE T0002 2 0.00 1CEO - 0
TSCORE T0002 2 0.00 1LEC - 0
TSCORE T0002 2 0.00 1CHR A 0
TSCORE T0002 2 0.00 4MBA - 0
TSCORE T0002 2 0.00 1BAB A 0
TSCORE T0002 2 0.00 2NAC A 0
TSCORE T0002 2 0.00 1GIA - 0
TSCORE T0002 2 0.00 1HBG - 0
TSCORE T0002 2 0.00 1BCX - 0
TSCORE T0002 2 0.00 1CTT - 0
TSCORE T0002 2 0.00 1VHH - 0
TSCORE T0002 2 0.00 1OMP - 0
TSCORE T0002 2 0.00 2LIG A 0
TSCORE T0002 2 0.00 1I1B - 0
TSCORE T0002 2 0.00 1QOR A 0
TSCORE T0002 2 0.00 1BBT 2 0
TSCORE T0002 2 0.00 1ESC - 0
TSCORE T0002 2 0.00 1GRJ - 0
TSCORE T0002 2 0.00 1CYX - 0
TSCORE T0002 2 0.00 1RBP - 0
TSCORE T0002 2 0.00 1LE4 - 0
TSCORE T0002 2 0.00 1DMA A 0
TSCORE T0002 2 0.00 2AAI B 0
TSCORE T0002 2 0.00 5PAL - 0
TSCORE T0002 2 0.00 1HJR A 0
TSCORE T0002 2 0.00 1PNE - 0
TSCORE T0002 2 0.00 1HLE A 0
TSCORE T0002 2 0.00 1OVI - 0
TSCORE T0002 2 0.00 1PRT B 0
TSCORE T0002 2 0.00 3CD4 - 0
TSCORE T0002 2 0.00 4SBV A 0
TSCORE T0002 2 0.00 1PHP - 0
TSCORE T0002 2 0.00 1XRA - 0
TSCORE T0002 2 0.00 1PEA - 0
TSCORE T0002 2 0.00 6LDH - 0
TSCORE T0002 2 0.00 1GFF 2 0
TSCORE T0002 2 0.00 1LXA - 0
TSCORE T0002 2 0.00 1ARB - 0
TSCORE T0002 2 0.00 1TAH B 0
TSCORE T0002 2 0.00 1SAC A 0
TSCORE T0002 2 0.00 1PRC H 0
TSCORE T0002 2 0.00 4ICD - 0
TSCORE T0002 2 0.00 1PKP - 0
TSCORE T0002 2 0.00 1SRA - 0
TSCORE T0002 2 0.00 1BIA - 0
TSCORE T0002 2 0.00 1FLP - 0
TSCORE T0002 2 0.00 2TMV P 0
TSCORE T0002 2 0.00 1TNF A 0
TSCORE T0002 2 0.00 1PAZ - 0
TSCORE T0002 2 0.00 1BBT 1 0
TSCORE T0002 2 0.00 1LTS A 0
TSCORE T0002 2 0.00 1PYA B 0
TSCORE T0002 2 0.00 1THV - 0
TSCORE T0002 2 0.00 1CTM - 0
TSCORE T0002 2 0.00 1RCB - 0
TSCORE T0002 2 0.00 2AZA A 0
TSCORE T0002 2 0.00 1SCU B 0
TSCORE T0002 2 0.00 1MUP - 0
TSCORE T0002 2 0.00 1OYB - 0
TSCORE T0002 2 0.00 1WHT B 0
TSCORE T0002 2 0.00 1VCA A 0
TSCORE T0002 2 0.00 1PRT A 0
TSCORE T0002 2 0.00 1BBH A 0
TSCORE T0002 2 0.00 7AAT A 0
TSCORE T0002 2 0.00 1HPM - 0
TSCORE T0002 2 0.00 1SNC - 0
TSCORE T0002 2 0.00 1GMF A 0
TSCORE T0002 2 0.00 2CCY A 0
TSCORE T0002 2 0.00 4CPV - 0
TSCORE T0002 2 0.00 1NBA A 0
TSCORE T0002 2 0.00 1ILL G 0
TSCORE T0002 2 0.00 2MEV 1 0
TSCORE T0002 2 0.00 1HGE A 0
TSCORE T0002 2 0.00 3RUB S 0
TSCORE T0002 2 0.00 1UBS B 0
TSCORE T0002 2 0.00 1TTB A 0
TSCORE T0002 2 0.00 1FPS - 0
TSCORE T0002 2 0.00 2MNR - 0
TSCORE T0002 2 0.00 1RND - 0
TSCORE T0002 2 0.00 3TGL - 0
TSCORE T0002 2 0.00 1MRR A 0
TSCORE T0002 2 0.00 153L - 0
TSCORE T0002 2 0.00 2BLT A 0
TSCORE T0002 2 0.00 2IHL - 0
TSCORE T0002 2 0.00 1BSR A 0
TSCORE T0002 2 0.00 1ECO - 0
TSCORE T0002 2 0.00 1ARP - 0
TSCORE T0002 2 0.00 1XIC - 0
TSCORE T0002 2 0.00 2MHR - 0
TSCORE T0002 2 0.00 1TSS A 0
TSCORE T0002 2 0.00 2SNV - 0
TSCORE T0002 2 0.00 1LIS - 0
TSCORE T0002 2 0.00 2OHX A 0
TSCORE T0002 2 0.00 1GTQ A 0
TSCORE T0002 2 0.00 1NIF - 0
TSCORE T0002 2 0.00 2STV - 0
TSCORE T0002 2 0.00 1VMO A 0
TSCORE T0002 2 0.00 1RFB A 0
TSCORE T0002 2 0.00 1NCF A 0
TSCORE T0002 2 0.00 1DTR - 0
TSCORE T0002 2 0.00 1RSY - 0
TSCORE T0002 2 0.00 1HTM D 0
TSCORE T0002 2 0.00 1ALS - 0
TSCORE T0002 2 0.00 8ATC B 0
TSCORE T0002 2 0.00 1AGI - 0
TSCORE T0002 2 0.00 1CGO - 0
TSCORE T0002 2 0.00 1VIL - 0
TSCORE T0002 2 0.00 1PVC 2 0
TSCORE T0002 2 0.00 1ILR 1 0
TSCORE T0002 2 0.00 1ACF - 0
TSCORE T0002 2 0.00 1CD8 - 0
TSCORE T0002 2 0.00 2MSB A 0
TSCORE T0002 2 0.00 2SAS - 0
TSCORE T0002 2 0.00 1PII - 0
TSCORE T0002 2 0.00 1SLT B 0
TSCORE T0002 2 0.00 1BMT A 0
TSCORE T0002 2 0.00 2PF2 - 0
TSCORE T0002 2 0.00 1BCO - 0
TSCORE T0002 2 0.00 1DOB - 0
TSCORE T0002 2 0.00 9WGA A 0
TSCORE T0002 2 0.00 1ILL R 0
TSCORE T0002 2 0.00 4ENL - 0
TSCORE T0002 2 0.00 1PVU A 0
TSCORE T0002 2 0.00 2BBK H 0
TSCORE T0002 2 0.00 1EFT - 0
TSCORE T0002 2 0.00 1CDA A 0
TSCORE T0002 2 0.00 1BNC A 0
TSCORE T0002 2 0.00 1PDN C 0
TSCORE T0002 2 0.00 1POA - 0
TSCORE T0002 2 0.00 2MTA C 0
TSCORE T0002 2 0.00 1CMB A 0
TSCORE T0002 2 0.00 1BVP 1 0
TSCORE T0002 2 0.00 1YCC - 0
TSCORE T0002 2 0.00 1PPK E 0
TSCORE T0002 2 0.00 1PRC C 0
TSCORE T0002 2 0.00 1AYA A 0
TSCORE T0002 2 0.00 1ITH A 0
TSCORE T0002 2 0.00 1AMG - 0
TSCORE T0002 2 0.00 1REG X 0
TSCORE T0002 2 0.00 2TRX A 0
TSCORE T0002 2 0.00 2END - 0
TSCORE T0002 2 0.00 1PGS - 0
TSCORE T0002 2 0.00 1FKB - 0
TSCORE T0002 2 0.00 2SIL - 0
TSCORE T0002 2 0.00 1BFG - 0
TSCORE T0002 2 0.00 3TRX - 0
TSCORE T0002 2 0.00 2PNA - 0
TSCORE T0002 2 0.00 1DUP A 0
TSCORE T0002 2 0.00 1APT - 0
TSCORE T0002 2 0.00 1TCA - 0
TSCORE T0002 2 0.00 1TPL A 0
TSCORE T0002 2 0.00 2DKB - 0
TSCORE T0002 2 0.00 1CXC - 0
TSCORE T0002 2 0.00 1LKK A 0
TSCORE T0002 2 0.00 1LGR - 0
TSCORE T0002 2 0.00 1MSC - 0
TSCORE T0002 2 0.00 2POL A 0
TSCORE T0002 2 0.00 2PLD A 0
TSCORE T0002 2 0.00 1EXG - 0
TSCORE T0002 2 0.00 2BBV A 0
TSCORE T0002 2 0.00 1MSA A 0
TSCORE T0002 2 0.00 1PRC M 0
TSCORE T0002 2 0.00 1HUL A 0
TSCORE T0002 2 0.00 1ADM A 0
TSCORE T0002 2 0.00 1CHM A 0
TSCORE T0002 2 0.00 3SIC I 0
TSCORE T0002 2 0.00 1ADE A 0
TSCORE T0002 2 0.00 1PKY A 0
TSCORE T0002 2 0.00 1BAC - 0
TSCORE T0002 2 0.00 3GRS - 0
TSCORE T0002 2 0.00 1CWP A 0
TSCORE T0002 2 0.00 1VSG A 0
TSCORE T0002 2 0.00 2CHS A 0
TSCORE T0002 2 0.00 1PHB - 0
TSCORE T0002 2 0.00 2MCM - 0
TSCORE T0002 2 0.00 3PTE - 0
TSCORE T0002 2 0.00 1NHP - 0
TSCORE T0002 2 0.00 1POC - 0
TSCORE T0002 2 0.00 1ILM B 0
TSCORE T0002 2 0.00 1PRN - 0
TSCORE T0002 2 0.00 1TLK - 0
TSCORE T0002 2 0.00 2CTS - 0
TSCORE T0002 2 0.00 1PIL - 0
TSCORE T0002 2 0.00 1FRD - 0
TSCORE T0002 2 0.00 3MDD A 0
TSCORE T0002 2 0.00 1MMO B 0
TSCORE T0002 2 0.00 2CDV - 0
TSCORE T0002 2 0.00 1ECM A 0
TSCORE T0002 2 0.00 1HSB B 0
TSCORE T0002 2 0.00 1APK - 0
TSCORE T0002 2 0.00 2RSP A 0
TSCORE T0002 2 0.00 2KAU A 0
TSCORE T0002 2 0.00 1ONC - 0
TSCORE T0002 2 0.00 1HCN B 0
TSCORE T0002 2 0.00 1GLN - 0
TSCORE T0002 2 0.00 1DPG A 0
TSCORE T0002 2 0.00 2WRP R 0
TSCORE T0002 2 0.00 1GPH 1 0
TSCORE T0002 2 0.00 1ALK A 0
TSCORE T0002 2 0.00 1LTS D 0
TSCORE T0002 2 0.00 1GCB - 0
TSCORE T0002 2 0.00 1INP - 0
TSCORE T0002 2 0.00 1FIV A 0
TSCORE T0002 2 0.00 1STF I 0
TSCORE T0002 2 0.00 1RIS - 0
TSCORE T0002 2 0.00 1KJC - 0
TSCORE T0002 2 0.00 2BBK L 0
TSCORE T0002 2 0.00 1PND - 0
TSCORE T0002 2 0.00 1ZAA C 0
TSCORE T0002 2 0.00 2KAU B 0
TSCORE T0002 2 0.00 5RUB B 0
TSCORE T0002 2 0.00 1DYN A 0
TSCORE T0002 2 0.00 3BCL - 0
TSCORE T0002 2 0.00 1FDD - 0
TSCORE T0002 2 0.00 1FNA - 0
TSCORE T0002 2 0.00 3ITR - 0
TSCORE T0002 2 0.00 1LLI A 0
TSCORE T0002 2 0.00 1OTG A 0
TSCORE T0002 2 0.00 1BNH - 0
TSCORE T0002 2 0.00 9RNT - 0
TSCORE T0002 2 0.00 1BPK - 0
TSCORE T0002 2 0.00 1BTC - 0
TSCORE T0002 2 0.00 1PTS A 0
TSCORE T0002 2 0.00 1LYL A 0
TSCORE T0002 2 0.00 256B A 0
TSCORE T0002 2 0.00 1LYL B 0
TSCORE T0002 2 0.00 1TNM - 0
TSCORE T0002 2 0.00 1FCD A 0
TSCORE T0002 2 0.00 1DCH A 0
TSCORE T0002 2 0.00 1OMF - 0
TSCORE T0002 2 0.00 1MYP C 0
TSCORE T0002 2 0.00 1GLK - 0
TSCORE T0002 2 0.00 1TEN - 0
TSCORE T0002 2 0.00 1HIV A 0
TSCORE T0002 2 0.00 1MHL C 0
TSCORE T0002 2 0.00 1ABA - 0
TSCORE T0002 2 0.00 1DIF A 0
TSCORE T0002 2 0.00 1GFF 1 0
TSCORE T0002 2 0.00 2SPC A 0
TSCORE T0002 2 0.00 1NSC A 0
TSCORE T0002 2 0.00 1PUC - 0
TSCORE T0002 2 0.00 1CBG - 0
TSCORE T0002 2 0.00 2PHY - 0
TSCORE T0002 2 0.00 1BRN L 0
TSCORE T0002 2 0.00 1LAM - 0
TSCORE T0002 2 0.00 1TPG - 0
TSCORE T0002 2 0.00 1PSP A 0
TSCORE T0002 2 0.00 1NCG - 0
TSCORE T0002 2 0.00 1PYI A 0
TSCORE T0002 2 0.00 1FIA B 0
TSCORE T0002 2 0.00 1DPP A 0
TSCORE T0002 2 0.00 1MIN A 0
TSCORE T0002 2 0.00 1GPM A 0
TSCORE T0002 2 0.00 1BTN - 0
TSCORE T0002 2 0.00 1FBR - 0
TSCORE T0002 2 0.00 1HCD - 0
TSCORE T0002 2 0.00 1TIG - 0
TSCORE T0002 2 0.00 1ICE B 0
TSCORE T0002 2 0.00 1CYI - 0
TSCORE T0002 2 0.00 1PRT D 0
TSCORE T0002 2 0.00 1CEW I 0
TSCORE T0002 2 0.00 1GMP A 0
TSCORE T0002 2 0.00 2HPD A 0
TSCORE T0002 2 0.00 1CEL A 0
TSCORE T0002 2 0.00 1MHL A 0
TSCORE T0002 2 0.00 1POH - 0
TSCORE T0002 2 0.00 1KPT A 0
TSCORE T0002 2 0.00 451C - 0
TSCORE T0002 2 0.00 1UDI I 0
TSCORE T0002 2 0.00 1BET - 0
TSCORE T0002 2 0.00 1PBA - 0
TSCORE T0002 2 0.00 1STD - 0
TSCORE T0002 2 0.00 1FLX - 0
TSCORE T0002 2 0.00 1TFG - 0
TSCORE T0002 2 0.00 1AKL - 0
TSCORE T0002 2 0.00 1PYD A 0
TSCORE T0002 2 0.00 2FXB - 0
TSCORE T0002 2 0.00 3GLY - 0
TSCORE T0002 2 0.00 1OLB A 0
TSCORE T0002 2 0.00 2BOP A 0
TSCORE T0002 2 0.00 1HKG - 0
TSCORE T0002 2 0.00 1GLA G 0
TSCORE T0002 2 0.00 1HST A 0
TSCORE T0002 2 0.00 3B5C - 0
TSCORE T0002 2 0.00 3COX - 0
TSCORE T0002 2 0.00 1HNY - 0
TSCORE T0002 2 0.00 1SMP I 0
TSCORE T0002 2 0.00 1HYP - 0
TSCORE T0002 2 0.00 1LEA - 0
TSCORE T0002 2 0.00 1CC5 - 0
TSCORE T0002 2 0.00 1NEQ - 0
TSCORE T0002 2 0.00 1PRT F 0
TSCORE T0002 2 0.00 1UTG - 0
TSCORE T0002 2 0.00 1HRY A 0
TSCORE T0002 2 0.00 1OEL A 0
TSCORE T0002 2 0.00 1TNS - 0
TSCORE T0002 2 0.00 1PK4 - 0
TSCORE T0002 2 0.00 1PDG A 0
TSCORE T0002 2 0.00 1UBI - 0
TSCORE T0002 2 0.00 1HIP - 0
TSCORE T0002 2 0.00 1TIF - 0
TSCORE T0002 2 0.00 1CTN - 0
TSCORE T0002 2 0.00 1COO - 0
TSCORE T0002 2 0.00 1CDC B 0
TSCORE T0002 2 0.00 1MDY A 0
TSCORE T0002 2 0.00 8CAT A 0
TSCORE T0002 2 0.00 1HUM A 0
TSCORE T0002 2 0.00 1VCC - 0
TSCORE T0002 2 0.00 1MOL A 0
TSCORE T0002 2 0.00 1ECL - 0
TSCORE T0002 2 0.00 1R69 - 0
TSCORE T0002 2 0.00 1PHT - 0
TSCORE T0002 2 0.00 1LAB - 0
TSCORE T0002 2 0.00 3PMG A 0
TSCORE T0002 2 0.00 2SN3 - 0
TSCORE T0002 2 0.00 1XXB A 0
TSCORE T0002 2 0.00 1DDT - 0
TSCORE T0002 2 0.00 1THG - 0
TSCORE T0002 2 0.00 1CTF - 0
TSCORE T0002 2 0.00 1SCC - 0
TSCORE T0002 2 0.00 1BGH - 0
TSCORE T0002 2 0.00 1APL C 0
TSCORE T0002 2 0.00 2GF1 - 0
TSCORE T0002 2 0.00 1HRE - 0
TSCORE T0002 2 0.00 1ENH - 0
TSCORE T0002 2 0.00 1LFB - 0
TSCORE T0002 2 0.00 3EBX - 0
TSCORE T0002 2 0.00 1HSQ - 0
TSCORE T0002 2 0.00 1WAP A 0
TSCORE T0002 2 0.00 1MJC - 0
TSCORE T0002 2 0.00 1SPB P 0
TSCORE T0002 2 0.00 1CHC - 0
TSCORE T0002 2 0.00 1PTH - 0
TSCORE T0002 2 0.00 2DRP A 0
TSCORE T0002 2 0.00 1ATA - 0
TSCORE T0002 2 0.00 1POX A 0
TSCORE T0002 2 0.00 1SCM A 0
TSCORE T0002 2 0.00 1HPI - 0
TSCORE T0002 2 0.00 1YPC I 0
TSCORE T0002 2 0.00 1PTX - 0
TSCORE T0002 2 0.00 1MCA A 0
TSCORE T0002 2 0.00 1HLH A 0
TSCORE T0002 2 0.00 1HCN A 0
TSCORE T0002 2 0.00 1FXR A 0
TSCORE T0002 2 0.00 1SAP - 0
TSCORE T0002 2 0.00 3IL8 - 0
TSCORE T0002 2 0.00 1HOE - 0
TSCORE T0002 2 0.00 1CSE I 0
TSCORE T0002 2 0.00 1ERG - 0
TSCORE T0002 2 0.00 3AAH B 0
TSCORE T0002 2 0.00 1PYA A 0
TSCORE T0002 2 0.00 1PNK B 0
TSCORE T0002 2 0.00 1AAL A 0
TSCORE T0002 2 0.00 1LCC A 0
TSCORE T0002 2 0.00 1PVC 4 0
TSCORE T0002 2 0.00 1TGX A 0
TSCORE T0002 2 0.00 2HIP A 0
TSCORE T0002 2 0.00 1BOV A 0
TSCORE T0002 2 0.00 1LPB A 0
TSCORE T0002 2 0.00 1SSR - 0
TSCORE T0002 2 0.00 2KAU C 0
TSCORE T0002 2 0.00 1HCC - 0
TSCORE T0002 2 0.00 1OTF A 0
TSCORE T0002 2 0.00 1YRN A 0
TSCORE T0002 2 0.00 1FXD - 0
TSCORE T0002 2 0.00 1ISU A 0
TSCORE T0002 2 0.00 1FOS F 0
TSCORE T0002 2 0.00 1FOS E 0
TSCORE T0002 2 0.00 1AAP A 0
TSCORE T0002 2 0.00 1ASO A 0
TSCORE T0002 2 0.00 1ABO A 0
TSCORE T0002 2 0.00 1GAT A 0
TSCORE T0002 2 0.00 1SHG - 0
TSCORE T0002 2 0.00 1HNR - 0
TSCORE T0002 2 0.00 1EGF - 0
TSCORE T0002 2 0.00 1MLP A 0
TSCORE T0002 2 0.00 1HCG B 0
TSCORE T0002 2 0.00 1LLA - 0
TSCORE T0002 2 0.00 1MMO D 0
TSCORE T0002 2 0.00 4SGB I 0
TSCORE T0002 2 0.00 1AOR A 0
TSCORE T0002 2 0.00 1MYK A 0
TSCORE T0002 2 0.00 1TFI - 0
TSCORE T0002 2 0.00 1HPT - 0
TSCORE T0002 2 0.00 1HCR A 0
TSCORE T0002 2 0.00 1HYM A 0
TSCORE T0002 2 0.00 1CGJ I 0
TSCORE T0002 2 0.00 1GAL - 0
TSCORE T0002 2 0.00 8RXN A 0
TSCORE T0002 2 0.00 1FC2 C 0
TSCORE T0002 2 0.00 3DPV A 0
TSCORE T0002 2 0.00 1IXA - 0
TSCORE T0002 2 0.00 2MEV 4 0
TSCORE T0002 2 0.00 3SGB I 0
TSCORE T0002 2 0.00 1CLG A 0
TSCORE T0002 2 0.00 1BBL - 0
TSCORE T0002 2 0.00 1EHS - 0
TSCORE T0002 2 0.00 1HTR P 0
TSCORE T0002 2 0.00 1PPT - 0
TSCORE T0002 2 0.00 1PDC - 0
TSCORE T0002 2 0.00 7API B 0
TSCORE T0002 2 0.00 2CRD - 0
TSCORE T0002 2 0.00 1PTQ - 0
TSCORE T0002 2 0.00 2CLG A 0
TSCORE T0002 2 0.00 1TSP - 0
TSCORE T0002 2 0.00 1BBA - 0
TSCORE T0002 2 0.00 2BPA 3 0
TSCORE T0002 2 0.00 2ACH B 0
TSCORE T0002 2 0.00 3AAH A 0
TSCORE T0002 2 0.00 1CBN - 0
TSCORE T0002 2 0.00 1BHP - 0
TSCORE T0002 2 0.00 1BTD A 0
TSCORE T0002 2 0.00 1INA - 0
TSCORE T0002 2 0.00 1IFI - 0
TSCORE T0002 2 0.00 1BI6 H 0
TSCORE T0002 2 0.00 1TAB I 0
TSCORE T0002 2 0.00 1WFB A 0
TSCORE T0002 2 0.00 1HLE B 0
TSCORE T0002 2 0.00 1BBT 4 0
TSCORE T0002 2 0.00 1ERL - 0
TSCORE T0002 2 0.00 1APH B 0
TSCORE T0002 2 0.00 1CAG B 0
TSCORE T0002 2 0.00 1DME - 0
TSCORE T0002 2 0.00 1LTS C 0
TSCORE T0002 2 0.00 1PAI B 0
TSCORE T0002 2 0.00 1TRK A 0
TSCORE T0002 2 0.00 1DFN A 0
TSCORE T0002 2 0.00 1DMC - 0
TSCORE T0002 2 0.00 2ZTA A 0
TSCORE T0002 2 0.00 1LYP - 0
TSCORE T0002 2 0.00 1MEA - 0
TSCORE T0002 2 0.00 1COS A 0
TSCORE T0002 2 0.00 1LCF - 0
TSCORE T0002 2 0.00 2MLT A 0
TSCORE T0002 2 0.00 1CCO - 0
TSCORE T0002 2 0.00 1GCN - 0
TSCORE T0002 2 0.00 1AHT L 0
TSCORE T0002 2 0.00 1BOM B 0
TSCORE T0002 2 0.00 1DLC - 0
TSCORE T0002 2 0.00 1PPE I 0
TSCORE T0002 2 0.00 1MMH 5 0
TSCORE T0002 2 0.00 1MMH 6 0
TSCORE T0002 2 0.00 1RLX B 0
TSCORE T0002 2 0.00 1APH A 0
TSCORE T0002 2 0.00 2IFO - 0
TSCORE T0002 2 0.00 6RLX A 0
TSCORE T0002 2 0.00 6RLX B 0
TSCORE T0002 2 0.00 1IFM - 0
TSCORE T0002 2 0.00 1MMH 3 0
TSCORE T0002 2 0.00 1CDG - 0
TSCORE T0002 2 0.00 1MMH 7 0
TSCORE T0002 2 0.00 1RLX A 0
TSCORE T0002 2 0.00 1BTS - 0
TSCORE T0002 2 0.00 1GOF - 0
TSCORE T0002 2 0.00 1APM I 0
TSCORE T0002 2 0.00 1BTQ - 0
TSCORE T0002 2 0.00 1CDL G 0
TSCORE T0002 2 0.00 1RPB - 0
TSCORE T0002 2 0.00 1BOM A 0
TSCORE T0002 2 0.00 2PTE E 0
TSCORE T0002 2 0.00 1EDN - 0
TSCORE T0002 2 0.00 1SOL - 0
TSCORE T0002 2 0.00 1MMH 2 0
TSCORE T0002 2 0.00 1MMH 4 0
TSCORE T0002 2 0.00 1MMH 1 0
TSCORE T0002 2 0.00 1AMB - 0
TSCORE T0002 2 0.00 8ACN - 0
TSCORE T0002 2 0.00 1ORD A 0
TSCORE T0002 2 0.00 1OAC A 0
TSCORE T0002 2 0.00 1GPB - 0
TSCORE T0002 2 0.00 1DIK - 0
TSCORE T0002 2 0.00 1RAE - 0
TSCORE T0002 2 0.00 1DHX - 0
REMARK 
REMARK =============================================================
REMARK Alignment read in,    2 sequences, length is 257
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  257  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  257 Check: 100  Weight: 1.00
REMARK Name: 1UBSA Len:  257 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  .........E LGEQRE..AL LAVTIPEEK. GSFLKFCQLL GGRSVTEFNY 
REMARK   1UBSA  MERYENLFAQ LNDRREGAFV PFVTLGDPGI EQSLKIIDTL IDAGADALEL 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  RF.......A D.AKNACIFV GVRLSRGLEE RKEILQMLND GGYS...VVD 
REMARK   1UBSA  GVPFSDPLAD GPTIQNANLR AFAAGVTPAQ CFEMLALIRE KHPTIPIGLL 
REMARK 
REMARK          101                                                150
REMARK T0002-C  LS......D. .DEMAKLHVR YMVG...... .G.....RPS HPLQER...L 
REMARK   1UBSA  MYANLVFNNG IDAFYARCEQ VGVDSVLVAD VPVEESAPFR QAALRHNIAP 
REMARK 
REMARK          151                                                200
REMARK T0002-C  YSFEFPESPG ALLRFLNTLG TYWNISL... ..FHYRSHGT DYGRVLAAFE 
REMARK   1UBSA  IFICPPNADD DLLRQVASYG RGYTYLLSRS PLHHLIEKLK EYHAAPALQG 
REMARK 
REMARK          201                                                250
REMARK T0002-C  LG.DHEPDFE TRLNELGYDC HDE.TNNPAF RFFLAG.... .......... 
REMARK   1UBSA  FGISSPEQVS AAVRAGAAGA ISGSAIVKII EKNLASPKQM LAELRSFVSA 
REMARK 
REMARK          251     257
REMARK T0002-C  .......
REMARK   1UBSA  MKAASRA
REMARK 
TALIGN T0002 2  332  338 1UBS A 0      10      16     0.60   1 
TALIGN T0002 2  339  349 1UBS A 0      19      29     0.60   1 
TALIGN T0002 2  350  371 1UBS A 0      31      52     0.60   1 
TALIGN T0002 2  372  373 1UBS A 0      60      61     0.60   1 
TALIGN T0002 2  374  405 1UBS A 0      63      94     0.60   1 
TALIGN T0002 2  406  410 1UBS A 0      98     102     0.60   1 
TALIGN T0002 2  411  411 1UBS A 0     109     109     0.60   1 
TALIGN T0002 2  412  424 1UBS A 0     112     124     0.60   1 
TALIGN T0002 2  425  425 1UBS A 0     132     132     0.60   1 
TALIGN T0002 2  426  434 1UBS A 0     138     146     0.60   1 
TALIGN T0002 2  435  462 1UBS A 0     150     177     0.60   1 
TALIGN T0002 2  463  482 1UBS A 0     194     213     0.60   1 
TALIGN T0002 2  483  502 1UBS A 0     215     234     0.60   1 
TALIGN T0002 2  503  514 1UBS A 0     236     247     0.60   1 
REMARK Alignment read in,    2 sequences, length is 257
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  257  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  257 Check: 100  Weight: 1.00
REMARK Name: 1UBSA Len:  257 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  .........E LGE.QR..EA LLAVTIPEE. KGSFLKFCQL LGGR.SVTEF 
REMARK   1UBSA  MERYENLFAQ LNDRREGAFV PFVTLGDPGI EQSLKIIDTL IDAGADALEL 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  NY.......R F......... ...ADAKN.. .......... ..ACIFVGVR 
REMARK   1UBSA  GVPFSDPLAD GPTIQNANLR AFAAGVTPAQ CFEMLALIRE KHPTIPIGLL 
REMARK 
REMARK          101                                                150
REMARK T0002-C  LS.RGLEE.. RKEILQMLND GGYS.VVDLS .D....DEMA KLHVRY...M 
REMARK   1UBSA  MYANLVFNNG IDAFYARCEQ VGVDSVLVAD VPVEESAPFR QAALRHNIAP 
REMARK 
REMARK          151                                                200
REMARK T0002-C  VGGRPSHPLQ .......... ERLYSFEFPE SPGALLRFLN TLGTY.WNIS 
REMARK   1UBSA  IFICPPNADD DLLRQVASYG RGYTYLLSRS PLHHLIEKLK EYHAAPALQG 
REMARK 
REMARK          201                                                250
REMARK T0002-C  ..LFHYRSHG TDYGRVL.AA FELGDHEPDF ETRLN.ELGY DCHDETNNPA 
REMARK   1UBSA  FGISSPEQVS AAVRAGAAGA ISGSAIVKII EKNLASPKQM LAELRSFVSA 
REMARK 
REMARK          251     257
REMARK T0002-C  FRFFLAG
REMARK   1UBSA  MKAASRA
REMARK 
TALIGN T0002 2  332  335 1UBS A 0      10      13     0.40   2 
TALIGN T0002 2  336  337 1UBS A 0      15      16     0.40   2 
TALIGN T0002 2  338  348 1UBS A 0      19      29     0.40   2 
TALIGN T0002 2  349  362 1UBS A 0      31      44     0.40   2 
TALIGN T0002 2  363  369 1UBS A 0      46      52     0.40   2 
TALIGN T0002 2  370  371 1UBS A 0      60      61     0.40   2 
TALIGN T0002 2  372  376 1UBS A 0      74      78     0.40   2 
TALIGN T0002 2  377  386 1UBS A 0      93     102     0.40   2 
TALIGN T0002 2  387  391 1UBS A 0     104     108     0.40   2 
TALIGN T0002 2  392  405 1UBS A 0     111     124     0.40   2 
TALIGN T0002 2  406  410 1UBS A 0     126     130     0.40   2 
TALIGN T0002 2  411  411 1UBS A 0     132     132     0.40   2 
TALIGN T0002 2  412  421 1UBS A 0     137     146     0.40   2 
TALIGN T0002 2  422  432 1UBS A 0     150     160     0.40   2 
TALIGN T0002 2  433  457 1UBS A 0     171     206     0.40   2 
TALIGN T0002 2  458  461 1UBS A 0     208     211     0.40   2 
TALIGN T0002 2  462  476 1UBS A 0     214     228     0.40   2 
TALIGN T0002 2  477  493 1UBS A 0     230     246     0.40   2 
TALIGN T0002 2  494  514 1UBS A 0     248     268     0.40   2 
REMARK =============================================================
REMARK 
REMARK 
REMARK Alignment read in,    2 sequences, length is 251
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  251  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  251 Check: 100  Weight: 1.00
REMARK Name: 1TPFA Len:  251 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  ELGEQREALL AVTIPEEKGS FLKFCQLLGG RSVT...EFN YRF....... 
REMARK   1TPFA  MSKPQPIAAA NWKCNGSQQS LSELIDLFNS TSINHDVQCV VASTFVHLAM 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  .....ADAK. .........N A....C.... .......I.F VGVRL..... 
REMARK   1TPFA  TKERLSHPKF VIAAQNAIAK SGAFTGEVSL PILKDFGVNW IVLGHSERRA 
REMARK 
REMARK          101                                                150
REMARK T0002-C  ..SRGLEERK EILQMLNDGG Y.SVVDLS.. .......D.D EMAKLHVRYM 
REMARK   1TPFA  YYGETNEIVA DKVAAAVASG FMVIACIGET LQERESGRTA VVVLTQIAAI 
REMARK 
REMARK          151                                                200
REMARK T0002-C  VGGRPSHPLQ ERLYSFEF.. ..PESPGALL RFLNTLGTYW NISLFHYRSH 
REMARK   1TPFA  AKKLKKADWA KVVIAYEPVW AIGTGKVATP QQAQEAHALI RSWVSSKI.G 
REMARK 
REMARK          201                                                250
REMARK T0002-C  GTDYGRVLAA FELGDHEPDF ETRLNE..LG YDCHD.ETNN P.AFRFFLA. 
REMARK   1TPFA  ADVAGELRIL YGGSVNGKNA RTLYQQRDVN GFLVGGASLK PEFVDIIKAT 
REMARK 
REMARK          251251
REMARK T0002-C  G
REMARK   1TPFA  Q
REMARK 
TALIGN T0002 2  332  365 1TPF A 0       1      34     0.60   1 
TALIGN T0002 2  366  371 1TPF A 0      38      43     0.60   1 
TALIGN T0002 2  372  375 1TPF A 0      56      59     0.60   1 
TALIGN T0002 2  376  377 1TPF A 0      70      71     0.60   1 
TALIGN T0002 2  378  378 1TPF A 0      76      76     0.60   1 
TALIGN T0002 2  379  379 1TPF A 0      88      88     0.60   1 
TALIGN T0002 2  380  385 1TPF A 0      90      95     0.60   1 
TALIGN T0002 2  386  404 1TPF A 0     103     121     0.60   1 
TALIGN T0002 2  405  410 1TPF A 0     123     128     0.60   1 
TALIGN T0002 2  411  411 1TPF A 0     138     138     0.60   1 
TALIGN T0002 2  412  440 1TPF A 0     140     168     0.60   1 
TALIGN T0002 2  441  466 1TPF A 0     173     198     0.60   1 
TALIGN T0002 2  468  494 1TPF A 0     199     225     0.60   1 
TALIGN T0002 2  495  501 1TPF A 0     228     234     0.60   1 
TALIGN T0002 2  502  506 1TPF A 0     236     240     0.60   1 
TALIGN T0002 2  507  513 1TPF A 0     242     248     0.60   1 
TALIGN T0002 2  514  514 1TPF A 0     250     250     0.60   1 
REMARK Alignment read in,    2 sequences, length is 252
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  252  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  252 Check: 100  Weight: 1.00
REMARK Name: 1TPFA Len:  252 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  ELGEQREALL AVTIP...EE KGSFLKFCQL LGGRSVTEFN YRFADA.... 
REMARK   1TPFA  ..MSKPQPIA AANWKCNGSQ QSLSELIDLF NSTSINHDVQ CVVASTFVHL 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  .......KNA CIFVGVR..L SRGLEERKEI .LQMLNDGGY S.VVDL.... 
REMARK   1TPFA  AMTKERLSHP KFVIAAQNAI AKSGAFTGEV SLPILKDFGV NWIVLGHSER 
REMARK 
REMARK          101                                                150
REMARK T0002-C  ....SD..DE MAKLHVRYMV G.GRPSHPLQ ERLYSFEFPE SPGALLRFLN 
REMARK   1TPFA  RAYYGETNEI VADKVAAAVA SGFMVIACIG ETLQERESGR TAVVVLTQIA 
REMARK 
REMARK          151                                                200
REMARK T0002-C  TLGTY.W... .........N .....ISLFH YRSHGTDYGR VLAAFELGDH 
REMARK   1TPFA  AIAKKLKKAD WAKVVIAYEP VWAIGTGKVA TPQQAQEAHA LIRSWVSSKI 
REMARK 
REMARK          201                                                250
REMARK T0002-C  EPDFETRL.. .......... .NELGYDCHD ET........ .NNPAFRFFL 
REMARK   1TPFA  GADVAGELRI LYGGSVNGKN ARTLYQQRDV NGFLVGGASL KPEFVDIIKA 
REMARK 
REMARK          251252
REMARK T0002-C  AG
REMARK   1TPFA  TQ
REMARK 
TALIGN T0002 2  334  346 1TPF A 0       1      13     0.40   2 
TALIGN T0002 2  347  374 1TPF A 0      17      44     0.40   2 
TALIGN T0002 2  375  384 1TPF A 0      56      65     0.40   2 
TALIGN T0002 2  385  395 1TPF A 0      68      78     0.40   2 
TALIGN T0002 2  396  405 1TPF A 0      80      89     0.40   2 
TALIGN T0002 2  406  409 1TPF A 0      91      94     0.40   2 
TALIGN T0002 2  410  411 1TPF A 0     103     104     0.40   2 
TALIGN T0002 2  412  424 1TPF A 0     107     119     0.40   2 
TALIGN T0002 2  425  457 1TPF A 0     121     153     0.40   2 
TALIGN T0002 2  458  458 1TPF A 0     155     155     0.40   2 
TALIGN T0002 2  459  459 1TPF A 0     168     168     0.40   2 
TALIGN T0002 2  460  492 1TPF A 0     174     206     0.40   2 
TALIGN T0002 2  493  503 1TPF A 0     220     230     0.40   2 
TALIGN T0002 2  504  514 1TPF A 0     240     250     0.40   2 
REMARK =============================================================
REMARK 
REMARK 
REMARK Alignment read in,    2 sequences, length is 192
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  192  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  192 Check: 100  Weight: 1.00
REMARK Name: 5P21 Len:  192 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  ELGEQREALL AVTIPEEKGS FLKFCQLLG. ..GR.SV... TEFNYRFADA 
REMARK    5P21  ...MTEYKLV VVGAGGVGKS ALTIQLIQNH FVDEYDPTIE DSYRKQVVID 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  KNACIFVGVR LSRGLEERKE ILQMLNDG.. GYSVVDLSDD EMAKLHVRYM 
REMARK    5P21  GETCLLDILD TAGQEEYSAM RDQYMRTGEG FLCVFAINNT KSFEDIHQYR 
REMARK 
REMARK          101                                                150
REMARK T0002-C  VGGRPSHPLQ ERLYSFEFPE SPGALLRFLN TLGTYWNISL FHYRSHGTDY 
REMARK    5P21  EQIKRVKDSD DVPMVLVGNK CD........ .LAAR.TVES RQAQDLARSY 
REMARK 
REMARK          151                                        192
REMARK T0002-C  GRVLAAFELG DHEPDFETRL NELGYDCHDE TNNPAFRFFL AG
REMARK    5P21  GIPYIETSA. KTRQG....V ........ED AFYTLVREIR QH
REMARK 
TALIGN T0002 2  335  360 5P21 - 0       1      26     0.60   1 
TALIGN T0002 2  361  362 5P21 - 0      30      31     0.60   1 
TALIGN T0002 2  363  364 5P21 - 0      33      34     0.60   1 
TALIGN T0002 2  365  402 5P21 - 0      38      75     0.60   1 
TALIGN T0002 2  403  444 5P21 - 0      78     119     0.60   1 
TALIGN T0002 2  454  457 5P21 - 0     120     123     0.60   1 
TALIGN T0002 2  459  481 5P21 - 0     124     146     0.60   1 
TALIGN T0002 2  483  487 5P21 - 0     147     151     0.60   1 
TALIGN T0002 2  492  492 5P21 - 0     152     152     0.60   1 
TALIGN T0002 2  501  514 5P21 - 0     153     166     0.60   1 
REMARK Alignment read in,    2 sequences, length is 193
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  193  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  193 Check: 100  Weight: 1.00
REMARK Name: 5P21 Len:  193 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  ELGEQREALL AVTIPEEKGS FLKFCQLLGG R...SVT... EFNYRFADAK 
REMARK    5P21  ....MTEYKL VVVGAGGVGK SALTIQLIQN HFVDEYDPTI EDSYRKQVVI 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  NA.CIFVGVR LSRGLEERKE ILQMLNDGG. .YSVVDLSDD EMAKLHVRYM 
REMARK    5P21  DGETCLLDIL DTAGQEEYSA MRDQYMRTGE GFLCVFAINN TKSFEDIHQY 
REMARK 
REMARK          101                                                150
REMARK T0002-C  VGGRPSHPLQ ERLYSFEFPE SPGALLRFLN TLGTYWNISL FHYRSHGTDY 
REMARK    5P21  REQIKRVKDS DDVPMVLVGN KC.......D LAARTVE... .SRQAQDLAR 
REMARK 
REMARK          151                                         193
REMARK T0002-C  GRVLAAFELG DHEPD.FETR LNELGYDCHD ETNNPAFRFF LAG
REMARK    5P21  SYGIPYIETS AKTRQGVEDA FYTLVREIRQ .......... ..H
REMARK 
TALIGN T0002 2  336  362 5P21 - 0       1      27     0.40   2 
TALIGN T0002 2  363  365 5P21 - 0      31      33     0.40   2 
TALIGN T0002 2  366  377 5P21 - 0      37      48     0.40   2 
TALIGN T0002 2  378  403 5P21 - 0      50      75     0.40   2 
TALIGN T0002 2  404  444 5P21 - 0      78     118     0.40   2 
TALIGN T0002 2  452  459 5P21 - 0     119     126     0.40   2 
TALIGN T0002 2  464  487 5P21 - 0     127     150     0.40   2 
TALIGN T0002 2  488  501 5P21 - 0     152     165     0.40   2 
TALIGN T0002 2  514  514 5P21 - 0     166     166     0.40   2 
REMARK =============================================================
REMARK 
REMARK 
REMARK Alignment read in,    2 sequences, length is 208
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  208  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  208 Check: 100  Weight: 1.00
REMARK Name: 1GARB Len:  208 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  ELGEQREALL AVTIPEEKGS FLKFCQLLGG RSVT.EFNYR FADAKN.... 
REMARK   1GARB  .....MN.IV VLISGN.GSN LQAIIDACKT NKIKGTVRAV FSNKADAFGL 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  ......ACIF VGVRL...SR GLEERKEILQ MLNDGGYSVV DLS......D 
REMARK   1GARB  ERARQAGIAT HTLIASAFDS REAYDRELIH EIDMYAPDVV VLAGFMRILS 
REMARK 
REMARK          101                                                150
REMARK T0002-C  DEMAKLHVRY MVGGRPSHPL QERLYSFEFP ESPGALLRFL NTLGTYWNIS 
REMARK   1GARB  PAFVSHYAGR LLNIHPSLLD EEHGTSVHFV TDE....... LD.GGPVILQ 
REMARK 
REMARK          151                                                200
REMARK T0002-C  LFH..YRSHG TDYGRVLAAF ELGDHEPDFE TRLNELGYDC HDE.TNNPAF 
REMARK   1GARB  AKVPVFAGDS EDDITARVQT QEHAIYPLVI SWFADGRLKM HENAAWLDGQ 
REMARK 
REMARK          201      208
REMARK T0002-C  RFFLAG..
REMARK   1GARB  RLPPQGYA
REMARK 
TALIGN T0002 2  337  338 1GAR B 0       1       2     0.60   1 
TALIGN T0002 2  340  347 1GAR B 0       3      10     0.60   1 
TALIGN T0002 2  349  365 1GAR B 0      11      27     0.60   1 
TALIGN T0002 2  366  376 1GAR B 0      29      39     0.60   1 
TALIGN T0002 2  377  385 1GAR B 0      50      58     0.60   1 
TALIGN T0002 2  386  410 1GAR B 0      62      86     0.60   1 
TALIGN T0002 2  411  444 1GAR B 0      93     142     0.60   1 
TALIGN T0002 2  452  453 1GAR B 0     143     144     0.60   1 
TALIGN T0002 2  455  464 1GAR B 0     145     154     0.60   1 
TALIGN T0002 2  465  502 1GAR B 0     157     194     0.60   1 
TALIGN T0002 2  503  514 1GAR B 0     196     207     0.60   1 
REMARK Alignment read in,    2 sequences, length is 202
REMARK MSF of bloc file read from standard input 
REMARK bloc2.msf MSF:  202  Type: P today Check: 100 ..
REMARK Name: T0002-C Len:  202 Check: 100  Weight: 1.00
REMARK Name: 1GARB Len:  202 Check: 100  Weight: 1.00
REMARK //
REMARK          1                                                   50
REMARK T0002-C  ELGEQREALL AVTIPEEKGS FLKFCQLLGG RSVTEFNYRF ADA.K..... 
REMARK   1GARB  ....MNIVVL ISGNGSNLQA IIDACKTNKI KGTVRAVFSN KADAFGLERA 
REMARK 
REMARK          51                                                 100
REMARK T0002-C  ...NACIFVG V.RLSRGLEE RKEILQMLND G.GYSVVDLS D..DEMAKLH 
REMARK   1GARB  RQAGIATHTL IASAFDSREA YDRELIHEID MYAPDVVVLA GFMRILSPAF 
REMARK 
REMARK          101                                                150
REMARK T0002-C  VRYMVGGRPS HPLQERLYSF EFPESPGALL RFLNTLGTYW NISLFHY.RS 
REMARK   1GARB  VSHY.AGRL. LNIHPSL..L DEEHGTSVHF V.TDELDGGP VILQAKVPVF 
REMARK 
REMARK          151                                                200
REMARK T0002-C  HGTDYGRVLA AFELGDHEPD FETRLNELGY DCHDETN... ..NPAFRFFL 
REMARK   1GARB  AGDSEDDITA RVQTQEHAIY PLVISWFADG RLKMHENAAW LDGQRLPPQG 
REMARK 
REMARK          201202
REMARK T0002-C  AG
REMARK   1GARB  YA
REMARK 
TALIGN T0002 2  336  374 1GAR B 0       1      39     0.40   2 
TALIGN T0002 2  375  375 1GAR B 0      41      41     0.40   2 
TALIGN T0002 2  376  383 1GAR B 0      50      57     0.40   2 
TALIGN T0002 2  384  402 1GAR B 0      59      77     0.40   2 
TALIGN T0002 2  403  411 1GAR B 0      79      87     0.40   2 
TALIGN T0002 2  412  422 1GAR B 0      90     100     0.40   2 
TALIGN T0002 2  424  427 1GAR B 0     101     104     0.40   2 
TALIGN T0002 2  429  435 1GAR B 0     105     111     0.40   2 
TALIGN T0002 2  438  449 1GAR B 0     112     139     0.40   2 
TALIGN T0002 2  451  465 1GAR B 0     140     154     0.40   2 
TALIGN T0002 2  466  504 1GAR B 0     156     194     0.40   2 
TALIGN T0002 2  505  514 1GAR B 0     200     209     0.40   2 
REMARK =============================================================
REMARK 
REMARK 


