
PFRMAT FRV1
REMARK ========================================================================
AUTHOR Willie Taylor and Robin Munro,
AUTHOR Division of Mathematical Biology,
AUTHOR National Institute for Medical Research,
AUTHOR The Ridgeway, Mill Hill, London NW7 1AA, U.K.
AUTHOR w_taylor@nimr.mrc.ac.uk
AUTHOR Tel. +44-181-959-3666 (ext.2298), FAX +44-181-913-8545
REMARK ========================================================================
REMARK Threading results for the target T0011, compared against a
REMARK Database containing 319 Structures (extended UCLA benchmark set).
REMARK 
REMARK ========================================================================
REMARK T0011 N-terminal part of heat shock protein HSP90 
REMARK T0011 from S.cerevisiae (220a.a.) Threading target T0011
SEQRES T0011 MASETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSL
SEQRES T0011 SDPKQLETEPDLFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSG
SEQRES T0011 TKAFMEALSAGADVSMIGQFGVGFYSLFLVADRVQVISKSNDDEQYIWES
SEQRES T0011 NAGGSFTVTLDEVNERIGRGTILRLFLKDDQLEYLEEKRIKEVIKRHSEF
SEQRES T0011 VAYPIQLVVTKEVEKEVPIP
REMARK ========================================================================
REMARK
REMARK  
REMARK       ..p- USER>>P1;HS83_LEIAM:145
REMARK       p-b- USER>>F1;JQ0129:160
REMARK       b--- USER>>P1;HS9B_MOUSE:154
REMARK  815
REMARK       p--- USER>>P1;T0011:146
REMARK       b-p- USER>>P1;S49155:146
REMARK       ..b- USER>>P1;HS82_MAIZE:158
REMARK  
REMARK  
REMARK  block 0 = 6 seqs
REMARK  *USER>>P1;HS83_LEIAM:145 :      HEAT SHOCK PROTEIN 83 (HSP 83). - LEISHMANIA AMAZONENSIS.
REMARK  *USER>>F1;JQ0129:160 :  86K heat shock protein IV - Human (fragment)
REMARK  *USER>>P1;HS9B_MOUSE:154 :      HEAT SHOCK PROTEIN HSP 84 (TUMOR SPECIFIC TRANSPLANTATION 84 KD ANTIGEN) (TSTA). - MUS MUSCULUS (MO
REMARK  *USER>>P1;T0011:146 :   N-terminal part of heat shock protein HSP90 from S.cerevisiae (220a.a.).
REMARK  *USER>>P1;S49155:146 :  heat-shock protein - Plasmodium falciparum
REMARK  *USER>>P1;HS82_MAIZE:158 :      HEAT SHOCK PROTEIN 82. - ZEA MAYS (MAIZE).
REMARK  
REMARK                 mtetfafqaeinqlmsliintfysnkeiflrdvisnasdacdkiryqsltdpsvlgdatrlcvrv
REMARK  mpeetqtqdqpmeeeevetfafqaeiaqlmsliintfysnkeiflrelisnssdaldkiwyesltdpskldsgkelhinl
REMARK        peevhhgeeevetfafqaeiaqlmsliintfysnkeiflrelisnasdaldkiryesltdpskldsgkelkidi
REMARK                masetfefqaeitqlmsliintvysnkeiflrelisnasdaldkirykslsdpkqletepdlfiri
REMARK                mstetfafnadirqlmsliintfysnkeiflrelisnasdaldkiryesitdtqklsaepeffiri
REMARK     masadvhmaggaetetfafqaeinqllsliintfysnkeiflrelisnasdaldkirfesltdksnvnaqpelfirl
REMARK  
REMARK  vpdkenktltvedngigmtkadlvnnlgtiarsgtkafmealeaga dmsmigqfgvgfysaylvadrvtvtsknnsdev
REMARK  ipnkqdqtltivdtgigmtkadlinnlgtiaksgtkafmealqaga dismigqfgvsfysaylvaekvtvitkhnddeq
REMARK  lpnpqertltlvdtgigmtkadlinnlgtiaksgtkafmealqaga dismigqfgvgfysaylvaekvvvitkhnddeq
REMARK  tpkpeqkvleirdsgigmtkaelinnlgtiaksgtkafmealsaga dvsmigqfgvgfyslflvadrvqvisksnddeq
REMARK  ipdktnntltiedsgigmtkndlinnlgtiarsgtkafmeaiqasg dismigqfgvgfysaylvadhvvvisknnddeq
REMARK  vpdkasktlsiidsgvgmtksdlvnnlgtiarsgtkefmealaagatdvsmigqfgvgfysaylvadrvmvttkhnddeq
REMARK  
REMARK  YVWESSAGGTFTitsa pesdmklparitlhlkedqleylearrlkelikkhsefigydielmvekttekevtded
REMARK  YAWESSAGGSFTvrtd tgermgrgtkvilhlkedqteyleeqrikeivkkhsqligypitlfvekecdkevsdde
REMARK  YAWESSAGGSFTvrad hgepigrgtkvilhlkedqteyleerrvkevvkkhsqfigypitlylekerekeisdde
REMARK  YIWESNAGGSFTvtldevnerigrgtilrlflkddqleyleekrikevikrhsefvaypiqlvvtkevekevpip 
REMARK  YVWESAAGGSFTvtkdetneklgrgtkiilhlkedqleyleekrikdlvkkhsefisfpiklycerqnekeisas 
REMARK  YVWESQAGGSFTvthdttgeqlgrgtkitlflkddqleyleerrlkdlvkkhsefisypiylwtekttekeisdd 
REMARK  
REMARK  
REMARK  2 groups ( 1 aligned )
REMARK  
REMARK  
REMARK  Comparing structure [ 2DNJ ] with profile [ >P1;HS83_LEIAM:145 >F1;JQ0129:160 >P1;HS9B_MOUSE:154 >P1;T0011:146 >P1;S49155:146 >P1;HS82_MAIZE:158 ]
REMARK   GAPS_wt = 3.000000 PAIR_wt = 0.300000 SECS_wt = 0.500000 PHOB_wt = 0.500000
REMARK  threading:  lena = 253 lenb = 236
REMARK  Observed beta  = 0.352, observed alpha  = 0.281
REMARK   n = 40
REMARK  Predicted beta = 0.352, predicted alpha = 0.284
REMARK   npairs = 2165
REMARK   npairs = 384
REMARK   sumss = 123.608719 sssum = 394.825104 ss_wt = 6.388305
REMARK   sumco = 167.399063 cosum = 198.202728 co_wt = 1.184013
REMARK   sumpk = 7360.323730 pksum = 6019.518066 pk_wt = 0.817833
REMARK  Percent sel on aln =  100.00
REMARK  Percent aln in sel =   48.53
REMARK  
REMARK  *NB* unequal number of lower-case positions (a=0, b=207)
REMARK  structure             sequence
REMARK  
REMARK                 :
REMARK     1 L E **   0.0    H  ee  g  14
REMARK     2 K E  *  61.9    H  eemma  15
REMARK     3 I E **  67.9    H meease  16
REMARK     4 A E **  78.6 *  H tvvstt  17
REMARK     5 A E  *  79.2 == H eeeeee  18
REMARK     6 F E **  94.9 ** H tttttt  19
REMARK     7 N E **  89.4 ** H ffffff  20
REMARK     8 I   **  75.8 *  H aaaeaa  21
REMARK     9 R    *  69.5 ** H ffffff  22
REMARK    10 T    *  68.5 =  H qqqqnq  23
REMARK    11 F   **  74.8 ** H aaaaaa  24
REMARK    12 G    *  61.0 =  H eeeede  25
REMARK    13 E H  *  64.9 ** H iiiiii  26
REMARK    14 T H     66.2    H naatrn  27
REMARK    15 K H  *  72.7 == H qqqqqq  28
REMARK    16 M H  *  67.8 ** H llllll  29
REMARK         :
REMARK    22 A H  *  74.0 ** H mmmmml  30
REMARK    23 S H  *  73.9 == H ssssss  31
REMARK    24 Y H  *  83.9 ** E llllll  32
REMARK    25 I H  *  79.5 ** E iiiiii  33
REMARK    26 V H  *  75.4 ** E iiiiii  34
REMARK    27 R H     81.6 == E nnnnnn  35
REMARK    28 I H  *  90.5 ** E tttttt  36
REMARK    29 V H **  85.8 **   fffvff  37
REMARK    30 R H  *  70.0 **   yyyyyy  38
REMARK    31 R    *  53.9 ==   ssssss  39
REMARK    32 Y    *   0.3 ==   nnnnnn  40
REMARK    33 D    *  61.2 ==   kkkkkk  41
REMARK    34 I   **  67.8 == E eeeeee  42
REMARK    35 V E **  95.5 ** E iiiiii  43
REMARK    36 L E **  89.2 ** E ffffff  44
REMARK    37 I E **  68.4 ** E llllll  45
REMARK    38 Q E **  51.1 == E rrrrrr  46
REMARK    39 E E  *  64.6 =  E deeeee  47
REMARK         :
REMARK    44 H       56.3 **   vlllll  48
REMARK    45 L H **  60.5 **   iiiiii  49
REMARK    46 V H     58.1 ==   ssssss  50
REMARK    47 A H  *  56.3 ==   nnnnnn  51
REMARK    48 V H **  61.8 *    asaaaa  52
REMARK    49 G H     61.6 ==   ssssss  53
REMARK    50 K H     75.0 ==   dddddd  54
REMARK    51 L H **  76.1 **   aaaaaa  55
REMARK    52 L H  *  61.5 **   clllll  56
REMARK    53 D H     58.5 == E dddddd  57
REMARK    54 Y H  *  59.3 == E kkkkkk  58
REMARK    55 L H  *  57.3 ** E iiiiii  59
REMARK         :
REMARK    62 T    *  62.8 =  E rwrrrr  60
REMARK    63 Y   **  70.7 ** E yyyyyf  61
REMARK    64 H E  *  62.7    E qeekee  62
REMARK    65 Y E  *  68.8 ==   ssssss  63
REMARK    66 V E  *  75.4 **   llllil  64
REMARK    67 V E  *  65.5 *    tttstt  65
REMARK    68 S E  *  47.2 ==   dddddd  66
REMARK    69 E E     61.4      pppptk  67
REMARK    70 P E  *  55.1      ssskqs  68
REMARK    71 L E  *  59.5      vkkqkn  69
REMARK    72 G    *  62.7 **   lllllv  70
REMARK    73 R    *   0.0      gddesn  71
REMARK    74 N       56.4      dsstaa  72
REMARK    75 S       57.2      aggeeq  73
REMARK    76 Y       64.4      tkkppp  74
REMARK    77 K E  *  69.0    E reedee  75
REMARK    78 E E  *  77.4 ** E llllfl  76
REMARK    79 R E  *  74.0    E chkfff  77
REMARK    80 Y E **  76.6 ** E viiiii  78
REMARK    81 L E  *  69.0    E rndrrr  79
REMARK    82 F E **  12.4 ** E vliiil  80
REMARK         :
REMARK    89 V   **  56.4 **   viltiv  81
REMARK    90 S E  *  42.6 ==   pppppp  82
REMARK    91 V E  *  23.6      dnnkdd  83
REMARK    92 L E  *  46.8 =    kkppkk  84
REMARK    93 D E     48.9      eqqeta  85
REMARK    94 T E  *  50.2      ndeqns  86
REMARK    95 Y E  *  67.4    E kqrknk  87
REMARK    96 Q E  *  68.6 ** E tttvtt  88
REMARK    97 Y E **  56.6 ** E llllll  89
REMARK    98 D E  *  44.6    E tttets  90
REMARK    99 D       37.4 ** E viliii  91
REMARK   100 D       33.7    E evvrei  92
REMARK         :
REMARK   105 E    *  30.5 ==   dddddd  93
REMARK   106 P E **  45.6      nttsss  94
REMARK   107 A E **  60.2 *=   gggggg  95
REMARK   108 V E **  63.3 ** E iiiiiv  96
REMARK   109 V E **  61.5 *=   gggggg  97
REMARK   110 K E  *  58.7 ** E mmmmmm  98
REMARK   111 F E **  50.2 ** E tttttt  99
REMARK   112 S E  *  40.4 == E kkkkkk 100
REMARK         :
REMARK   118 V   **  46.8 *  E aaaans 101
REMARK   119 K       55.1 =  E dddedd 102
REMARK   120 E E  *  61.1 ** E llllll 103
REMARK   121 F E **  56.5 ** E viiiiv 104
REMARK   122 A E **  48.8 ==   nnnnnn 105
REMARK   123 I E **  58.2 == E nnnnnn 106
REMARK   124 V E **  73.8 ** E llllll 107
REMARK   125 A E **  67.8 *= E gggggg 108
REMARK   126 L E **  66.8 ** E tttttt 109
REMARK   127 H E **  52.5 ** E iiiiii 110
REMARK         :
REMARK   133 A H  *  60.4 ** E aaaaaa 111
REMARK   134 V H  *  50.3      rkkkrr 112
REMARK   135 A H  *  68.4 ==   ssssss 113
REMARK   136 E H  *  74.4 *=   gggggg 114
REMARK   137 I H **  73.5 **   tttttt 115
REMARK   138 N H  *  70.0 ==   kkkkkk 116
REMARK   139 S H  *  78.1 *  E aaaaae 117
REMARK   140 L H  *  80.1 ** E ffffff 118
REMARK   141 Y H  *  78.7 ** E mmmmmm 119
REMARK   142 D H     87.9 == H eeeeee 120
REMARK   143 V H **  90.3 ** H aaaaaa 121
REMARK   144 Y H **  75.5 ** H llllil 122
REMARK   145 L H     63.1    H eqqsqa 123
REMARK   146 D H  *  57.6 ** H aaaaaa 124
REMARK   147 V H **  52.8 =    ggggsg 125
REMARK   148 Q H  *  49.1 **   aaaaga 126
REMARK         :
REMARK   152 H       42.3           t 127
REMARK   153 L    *  40.0 == E dddddd 128
REMARK   154 N    *  59.8 ** E miiviv 129
REMARK   155 D E  *  73.3 == E ssssss 130
REMARK   156 V E **  89.9 ** E mmmmmm 131
REMARK   157 M E **  78.0 ** E iiiiii 132
REMARK   158 L E **  65.0 *= E gggggg 133
REMARK   159 M E  *  58.8 == E qqqqqq 134
REMARK   160 G E **  66.1 ** E ffffff 135
REMARK   161 D    *  54.7 *= E gggggg 136
REMARK   162 F   **  54.6 ** E vvvvvv 137
REMARK   163 N E  *  26.0 =  E gsgggg 138
REMARK   164 A   **  19.2 ** E ffffff 139
REMARK         :
REMARK   175 S H  *  55.6 ** E yyyyyy 140
REMARK   176 S       62.5 ==   ssssss 141
REMARK   177 I   **  77.6 ** E aaalaa 142
REMARK   178 R    *  83.9 ** E yyyfyy 143
REMARK   179 L H **  92.8 ** E llllll 144
REMARK   180 R H **  83.0 ** E vvvvvv 145
REMARK   181 T H  *  64.4 ** E aaaaaa 146
REMARK   182 S    *  54.1 =  E deeddd 147
REMARK   183 S       63.3    E rkkrhr 148
REMARK   184 T    *  68.9 ** E vvvvvv 149
REMARK   185 F    *  73.9 *  E ttvqvm 150
REMARK   186 Q E  *  76.4 ** E vvvvvv 151
REMARK   187 W E  *  69.9 ** E tiiiit 152
REMARK   188 L    *  51.8      sttsst 153
REMARK   189 I   **  51.4 ==   kkkkkk 154
REMARK   190 P        0.0      nhhsnh 155
REMARK   191 D    *   0.0 ==   nnnnnn 156
REMARK   192 S       57.6 =    sddddd 157
REMARK   193 A    *   0.0 ==   dddddd 158
REMARK   194 D E  *  68.2 == E eeeeee 159
REMARK   195 T E  *  78.5 =  E vqqqqq 160
REMARK   196 T   **  86.6 ** E YYYYYY 161
REMARK   197 A   **  77.5 ** E VAAIVV 162
REMARK   198 T    *  66.4 **   WWWWWW 163
REMARK   199 S       58.1 ==   EEEEEE 164
REMARK   200 T    *  61.3 ==   SSSSSS 165
REMARK   201 N    *  73.5      SSSNAQ 166
REMARK   202 C E **  81.4 **   AAAAAA 167
REMARK   203 A E **  70.5 *=   GGGGGG 168
REMARK   204 Y E  *  74.6 *=   GGGGGG 169
REMARK   205 D E  *  81.9 =    TSSSSS 170
REMARK   206 R E ** 101.7 **   FFFFFF 171
REMARK   207 I E **  91.3 ** E TTTTTT 172
REMARK   208 V E **  67.1 ** E ivvvvv 173
REMARK   209 V E **  41.2 =    trrttt 174
REMARK   210 A E  *  27.6      stalkh 175
REMARK                 :
REMARK   211 G    *   0.0 =    pggggg 185
REMARK   212 S       51.3 *  E attttt 186
REMARK   213 L H  *  67.9    E rkkikk 187
REMARK   214 L H **  72.2 ** E ivvlii 188
REMARK   215 Q H  *  59.3 *  E tiirit 189
REMARK   216 S H     62.7 ** H llllll 190
REMARK   217 S    *  67.5 *  H hhhfhf 191
REMARK   218 V   **  73.3 ** H llllll 192
REMARK   219 V    *  55.3 == H kkkkkk 193
REMARK   220 P       58.3 =  H eeeded 194
REMARK   221 G    *  61.9 == H dddddd 195
REMARK   222 S    *  64.3 == H qqqqqq 196
REMARK   223 A E  *  75.5 ** H lttlll 197
REMARK   224 A E  *  75.1 == H eeeeee 198
REMARK   225 P E  *  81.8 ** H yyyyyy 199
REMARK   226 F E  *  70.8 ** H llllll 200
REMARK   227 D    *  48.0 == H eeeeee 201
REMARK   228 F    *  30.3 =  H aeeeee 202
REMARK   229 Q H  *  54.2    H rqrkkr 203
REMARK   230 A H     68.8 == H rrrrrr 204
REMARK   231 A H  *  60.8 ** H liviil 205
REMARK   232 Y       53.7 == H kkkkkk 206
REMARK   233 G       53.9 =  H eeeedd 207
REMARK   234 L E  *  46.4 ** H livvll 208
REMARK         :
REMARK   236 N    *  35.8 ** H ivvivv 209
REMARK   237 E H     41.7 == H kkkkkk 210
REMARK   238 M H     48.6 =  H kkkrkk 211
REMARK   239 A H  *   0.0 == H hhhhhh 212
REMARK   240 L H  *  65.2 == H ssssss 213
REMARK   241 A H     82.2 =  H eqqeee 214
REMARK   242 I H **  81.9 ** H flffff 215
REMARK   243 S    *  74.7 **   iiivii 216
REMARK   244 D    *  70.4      gggass 217
REMARK   245 H   **  81.2 **   yyyyfy 218
REMARK   246 Y E  *  63.0 =    dppppp 219
REMARK   247 P E  *  77.5 ** H iiiiii 220
REMARK   248 V E **  72.4    H ettqky 221
REMARK   249 E E  *  84.8 ** E llllll 222
REMARK   250 V E **  75.6 *  E mfyvyw 223
REMARK   251 T E  *  67.9 *  E vvlvct 224
REMARK   252 L E **   0.1 =    eeetee 225
REMARK   253 T E  *  57.9 =    kkkkrk 226
REMARK  
REMARK  pcthit =    inf   Drawing structure in pack.out
REMARK   score = 12495.614258
REMARK  
REMARK
REMARK          5        10        15        20        25        30        35        40
REMARK  M A S E T F E F Q A E I T Q L M S L I I N T V Y S N K E I F L R E L I S N A S D 
REMARK  2--------------------------1622--------------------------------3944------------
REMARK
REMARK         45        50        55        60        65        70        75        80
REMARK  A L D K I R Y K S L S D P K Q L E T E P D L F I R I T P K P E Q K V L E I R D S
REMARK  -------5562--------------------------------------8289------------------990712--
REMARK
REMARK         85        90        95       100       105       110       115       120
REMARK  G I G M T K A E L I N N L G T I A K S G T K A F M E A L S A G A D V S M I G Q F
REMARK  ---------1925----------------3440----------------------------5560--------------
REMARK
REMARK        125       130       135       140       145       150       155       160
REMARK  G V G F Y S L F L V A D R V Q V I S K S N D D E Q Y I W E S N A G G S F T V T L
REMARK  -----7182--------------------------------------------------------------------17
REMARK
REMARK        165       170       175       180       185       190       195       200
REMARK  D E V N E R I G R G T I L R L F L K D D Q L E Y L E E K R I K E V I K R H S E F
REMARK                   18--------------------------------------------4143------------ 
REMARK
REMARK        205       210       215       220 
REMARK  V A Y P I Q L V V T K E V E K E V P I P
REMARK  -------------------60
REMARK
REMARK
REMARK ========================================================================
TSCORE T0011 0  1.0     2DNJ A 0
REMARK ========================================================================
TALIGN T0011 0    1   15        2DNJ A 0          2   16        1.0     1
TALIGN T0011 0   16   33        2DNJ A 0         22   39        1.0     1
TALIGN T0011 0   34   45        2DNJ A 0         44   55        1.0     1
TALIGN T0011 0   46   66        2DNJ A 0         62   82        1.0     1
TALIGN T0011 0   67   77        2DNJ A 0         89   99        1.0     1
TALIGN T0011 0   78   78        2DNJ A 0        107  107        1.0     1
TALIGN T0011 0   79   86        2DNJ A 0        112  119        1.0     1
TALIGN T0011 0   87   96        2DNJ A 0        125  134        1.0     1
TALIGN T0011 0   97  112        2DNJ A 0        140  155        1.0     1
TALIGN T0011 0  113  124        2DNJ A 0        160  171        1.0     1
TALIGN T0011 0  125  160        2DNJ A 0        182  217        1.0     1
TALIGN T0011 0  170  193        2DNJ A 0        218  241        1.0     1
TALIGN T0011 0  194  211        2DNJ A 0        243  260        1.0     1
REMARK ========================================================================

